Wall clock time and date at job start Tue Mar 31 2020 06:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 110.42009 * 2 1 4 4 C 1.54481 * 110.37229 * 237.69781 * 2 1 3 5 5 C 1.54502 * 104.06527 * 217.18659 * 4 2 1 6 6 C 1.54486 * 104.06286 * 359.97438 * 5 4 2 7 7 H 1.09006 * 110.46463 * 265.10330 * 6 5 4 8 8 C 1.50690 * 110.37434 * 142.81005 * 6 5 4 9 9 O 1.21284 * 120.00263 * 248.16407 * 8 6 5 10 10 N 1.34783 * 120.00182 * 68.16500 * 8 6 5 11 11 C 1.46500 * 120.00323 * 179.97438 * 10 8 6 12 12 C 1.52999 * 109.47166 * 180.02562 * 11 10 8 13 13 H 1.09003 * 110.63658 * 305.70035 * 12 11 10 14 14 C 1.55154 * 110.71693 * 182.56105 * 12 11 10 15 15 C 1.54916 * 101.58127 * 205.95634 * 14 12 11 16 16 N 1.47422 * 104.83003 * 37.00852 * 15 14 12 17 17 C 1.36937 * 125.64753 * 155.91114 * 16 15 14 18 18 H 1.08001 * 120.00004 * 353.89834 * 17 16 15 19 19 C 1.38815 * 119.99898 * 173.90358 * 17 16 15 20 20 N 1.31615 * 120.00247 * 6.82283 * 19 17 16 21 21 Si 1.86800 * 119.99918 * 186.82923 * 19 17 16 22 22 H 1.48494 * 109.47274 * 94.97947 * 21 19 17 23 23 H 1.48494 * 109.47179 * 214.98258 * 21 19 17 24 24 H 1.48508 * 109.46982 * 334.98212 * 21 19 17 25 25 C 1.47031 * 108.70507 * 335.87421 * 16 15 14 26 26 O 1.44421 * 104.80271 * 23.97588 * 6 5 4 27 27 H 1.09002 * 109.47168 * 299.13458 * 1 2 3 28 28 H 1.08997 * 109.47720 * 59.14043 * 1 2 3 29 29 H 1.09008 * 109.47125 * 179.14149 * 1 2 3 30 30 H 1.09004 * 110.50925 * 335.83178 * 4 2 1 31 31 H 1.09003 * 110.51637 * 98.40092 * 4 2 1 32 32 H 1.09006 * 110.51405 * 241.35341 * 5 4 2 33 33 H 1.09005 * 110.51625 * 118.63972 * 5 4 2 34 34 H 0.96998 * 119.99709 * 0.02562 * 10 8 6 35 35 H 1.08995 * 109.46700 * 59.99977 * 11 10 8 36 36 H 1.09002 * 109.47193 * 300.00516 * 11 10 8 37 37 H 1.09005 * 111.00658 * 324.02750 * 14 12 11 38 38 H 1.09001 * 111.00726 * 87.88204 * 14 12 11 39 39 H 1.08992 * 110.36905 * 155.84628 * 15 14 12 40 40 H 1.08996 * 110.36452 * 278.17311 * 15 14 12 41 41 H 0.97004 * 120.00263 * 180.02562 * 20 19 17 42 42 H 1.09000 * 109.88200 * 241.64209 * 25 16 15 43 43 H 1.08992 * 109.88119 * 120.48019 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9103 1.0216 0.0000 4 6 2.0677 -0.7739 -1.2241 5 6 3.3177 -1.5055 -0.6862 6 6 3.3878 -1.0866 0.7991 7 1 4.0534 -0.2323 0.9232 8 6 3.8535 -2.2410 1.6484 9 8 3.0900 -2.7639 2.4324 10 7 5.1185 -2.6925 1.5368 11 6 5.5715 -3.8144 2.3629 12 6 7.0353 -4.1246 2.0433 13 1 7.1680 -4.2924 0.9745 14 6 7.5266 -5.3511 2.8567 15 6 9.0501 -5.0817 2.9361 16 7 9.1674 -3.6199 3.0873 17 6 10.2274 -2.9580 3.6470 18 1 11.0272 -3.5151 4.1122 19 6 10.2740 -1.5710 3.6166 20 7 9.2408 -0.8874 3.1722 21 14 11.8031 -0.6746 4.2064 22 1 12.6805 -0.3765 3.0461 23 1 11.4085 0.5950 4.8678 24 1 12.5359 -1.5300 5.1742 25 6 7.9580 -2.9904 2.5368 26 8 2.0334 -0.7229 1.1442 27 1 -0.3633 0.5003 0.8977 28 1 -0.3634 0.5271 -0.8821 29 1 -0.3634 -1.0276 -0.0154 30 1 1.3275 -1.4918 -1.5774 31 1 2.3405 -0.0839 -2.0226 32 1 4.2109 -1.1770 -1.2178 33 1 3.1955 -2.5852 -0.7735 34 1 5.7293 -2.2740 0.9101 35 1 4.9594 -4.6912 2.1518 36 1 5.4779 -3.5510 3.4164 37 1 7.0800 -5.3649 3.8510 38 1 7.3213 -6.2802 2.3250 39 1 9.4804 -5.5881 3.7999 40 1 9.5413 -5.4088 2.0197 41 1 9.2734 0.0819 3.1506 42 1 8.2250 -2.3406 1.7034 43 1 7.4545 -2.4137 3.3126 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028808155.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:13 Heat of formation + Delta-G solvation = -88.815914 kcal Electronic energy + Delta-G solvation = -22604.148984 eV Core-core repulsion = 19262.630428 eV Total energy + Delta-G solvation = -3341.518557 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.38184 -39.86704 -39.03135 -36.00073 -34.41914 -33.28116 -32.85065 -31.55852 -29.65950 -28.11129 -26.97321 -25.09591 -23.52133 -22.17439 -22.01748 -21.40320 -20.95864 -18.89121 -18.29507 -17.75282 -17.37096 -17.06516 -16.41808 -16.23773 -15.73200 -15.59252 -15.28720 -14.75753 -14.47126 -14.24457 -14.22770 -13.52409 -13.47135 -13.43228 -13.22434 -13.15142 -12.77926 -12.72186 -12.65458 -12.48727 -12.05103 -11.94536 -11.83866 -11.82101 -11.65207 -11.49375 -11.39691 -11.02071 -10.68519 -10.64034 -10.11325 -8.85876 -7.85546 -5.18530 1.46385 1.47232 1.50307 1.56123 1.93116 2.50250 3.01310 3.33147 3.47342 3.60915 3.65932 3.90068 3.92231 3.97542 3.99705 4.08188 4.17556 4.29043 4.45793 4.49762 4.57342 4.61853 4.66597 4.77515 4.87199 4.90823 4.92263 4.97037 5.02693 5.04417 5.17252 5.17656 5.26588 5.37175 5.47172 5.47643 5.68719 5.77996 5.82987 6.22092 6.50471 7.12520 7.16818 7.80245 8.44737 9.25175 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020819 B = 0.003745 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.632368 B = 7474.878359 C = 8361.078356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.053 3.947 3 H 0.083 0.917 4 C -0.141 4.141 5 C -0.138 4.138 6 C 0.056 3.944 7 H 0.108 0.892 8 C 0.513 3.487 9 O -0.578 6.578 10 N -0.708 5.708 11 C 0.146 3.854 12 C -0.112 4.112 13 H 0.098 0.902 14 C -0.111 4.111 15 C 0.125 3.875 16 N -0.633 5.633 17 C -0.244 4.244 18 H 0.079 0.921 19 C -0.063 4.063 20 N -0.945 5.945 21 Si 0.974 3.026 22 H -0.285 1.285 23 H -0.297 1.297 24 H -0.271 1.271 25 C 0.197 3.803 26 O -0.382 6.382 27 H 0.055 0.945 28 H 0.099 0.901 29 H 0.054 0.946 30 H 0.082 0.918 31 H 0.108 0.892 32 H 0.113 0.887 33 H 0.074 0.926 34 H 0.413 0.587 35 H 0.080 0.920 36 H 0.040 0.960 37 H 0.063 0.937 38 H 0.105 0.895 39 H 0.041 0.959 40 H 0.031 0.969 41 H 0.246 0.754 42 H 0.016 0.984 43 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.000 -1.361 -12.651 18.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.004 4.004 3 H 0.101 0.899 4 C -0.179 4.179 5 C -0.176 4.176 6 C -0.005 4.005 7 H 0.126 0.874 8 C 0.300 3.700 9 O -0.458 6.458 10 N -0.361 5.361 11 C 0.022 3.978 12 C -0.132 4.132 13 H 0.116 0.884 14 C -0.150 4.150 15 C 0.000 4.000 16 N -0.360 5.360 17 C -0.373 4.373 18 H 0.097 0.903 19 C -0.257 4.257 20 N -0.594 5.594 21 Si 0.803 3.197 22 H -0.212 1.212 23 H -0.223 1.223 24 H -0.196 1.196 25 C 0.072 3.928 26 O -0.301 6.301 27 H 0.074 0.926 28 H 0.117 0.883 29 H 0.074 0.926 30 H 0.101 0.899 31 H 0.126 0.874 32 H 0.132 0.868 33 H 0.093 0.907 34 H 0.250 0.750 35 H 0.098 0.902 36 H 0.058 0.942 37 H 0.082 0.918 38 H 0.124 0.876 39 H 0.059 0.941 40 H 0.049 0.951 41 H 0.055 0.945 42 H 0.034 0.966 43 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges -13.584 -1.602 -11.845 18.095 hybrid contribution 1.292 1.037 0.446 1.715 sum -12.292 -0.566 -11.399 16.774 Atomic orbital electron populations 1.21819 0.92146 1.02753 1.03363 1.23393 0.96445 0.95984 0.84583 0.89906 1.23018 0.96709 1.00056 0.98099 1.22942 1.01330 1.01991 0.91381 1.22950 0.86793 0.95552 0.95217 0.87448 1.20783 0.81850 0.84494 0.82892 1.90668 1.55531 1.60151 1.39438 1.45849 1.11947 1.35456 1.42813 1.21198 0.93927 0.88757 0.93895 1.22581 0.92527 0.96946 1.01119 0.88421 1.22687 0.94705 0.97487 1.00072 1.21800 0.95635 0.84164 0.98403 1.44856 1.18599 1.02042 1.70500 1.19445 0.98381 0.89789 1.29717 0.90276 1.25603 1.00622 0.97081 1.02362 1.70161 1.29966 1.05466 1.53809 0.85121 0.79205 0.77738 0.77650 1.21211 1.22342 1.19560 1.20923 0.85348 0.91540 0.95014 1.89248 1.25823 1.75029 1.40026 0.92632 0.88284 0.92637 0.89913 0.87396 0.86832 0.90748 0.75033 0.90220 0.94178 0.91845 0.87626 0.94094 0.95089 0.94458 0.96602 0.97883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.52 71.98 0.69 -1.61 16 2 C 0.05 1.00 3.92 31.10 0.12 1.12 16 3 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 4 C -0.14 -1.99 6.63 31.61 0.21 -1.78 16 5 C -0.14 -2.40 6.62 31.61 0.21 -2.19 16 6 C 0.06 1.44 3.71 30.35 0.11 1.55 16 7 H 0.11 2.48 8.14 -2.38 -0.02 2.46 16 8 C 0.51 17.03 7.07 87.65 0.62 17.65 16 9 O -0.58 -24.54 16.56 15.31 0.25 -24.28 16 10 N -0.71 -21.35 5.44 -463.06 -2.52 -23.87 16 11 C 0.15 4.72 5.01 86.38 0.43 5.15 16 12 C -0.11 -3.73 2.98 -9.61 -0.03 -3.76 16 13 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 14 C -0.11 -3.45 6.53 31.99 0.21 -3.24 16 15 C 0.12 4.87 7.23 86.86 0.63 5.50 16 16 N -0.63 -32.06 3.39 -691.99 -2.35 -34.41 16 17 C -0.24 -13.67 10.26 84.03 0.86 -12.81 16 18 H 0.08 4.27 7.84 -2.91 -0.02 4.24 16 19 C -0.06 -3.58 5.48 84.86 0.47 -3.12 16 20 N -0.95 -55.77 10.36 21.65 0.22 -55.54 16 21 Si 0.97 45.60 29.56 68.60 2.03 47.63 16 22 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 23 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 24 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 25 C 0.20 9.21 4.79 86.73 0.42 9.62 16 26 O -0.38 -11.30 10.60 -130.63 -1.39 -12.68 16 27 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.05 0.98 8.12 -2.38 -0.02 0.96 16 30 H 0.08 1.11 7.86 -2.38 -0.02 1.09 16 31 H 0.11 0.94 8.14 -2.39 -0.02 0.93 16 32 H 0.11 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.07 1.39 7.87 -2.38 -0.02 1.37 16 34 H 0.41 10.86 8.41 -92.71 -0.78 10.08 16 35 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.04 1.54 8.01 -2.39 -0.02 1.52 16 37 H 0.06 2.04 8.05 -2.38 -0.02 2.02 16 38 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 39 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.03 1.15 8.14 -2.39 -0.02 1.14 16 41 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 42 H 0.02 0.81 7.37 -2.39 -0.02 0.80 16 43 H 0.00 0.16 7.14 -2.39 -0.02 0.14 16 Total: -1.00 -75.74 345.53 1.40 -74.34 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.20 Total: 16.74 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: 4.94 Total: 12.09 kcal Atomic # 7 Polarization: -109.18 SS G_CDS: -4.64 Total: -113.82 kcal Atomic # 8 Polarization: -35.84 SS G_CDS: -1.13 Total: -36.97 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -75.74 1.40 -74.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028808155.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.475 kcal (2) G-P(sol) polarization free energy of solvation -75.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds