Wall clock time and date at job start Tue Mar 31 2020 06:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.55514 * 2 1 4 4 C 1.54997 * 110.61756 * 237.11570 * 2 1 3 5 5 C 1.54808 * 102.09167 * 204.47809 * 4 2 1 6 6 C 1.54102 * 104.18737 * 20.87969 * 5 4 2 7 7 H 1.08999 * 109.87587 * 242.45089 * 6 5 4 8 8 C 1.50702 * 109.87494 * 121.45922 * 6 5 4 9 9 O 1.21287 * 119.99234 * 245.30417 * 8 6 5 10 10 N 1.34776 * 120.00539 * 65.30410 * 8 6 5 11 11 C 1.46494 * 119.99924 * 179.97438 * 10 8 6 12 12 C 1.53003 * 109.47093 * 180.02562 * 11 10 8 13 13 H 1.08994 * 110.64092 * 51.85750 * 12 11 10 14 14 C 1.55154 * 110.72254 * 174.99951 * 12 11 10 15 15 C 1.54908 * 101.58289 * 153.86462 * 14 12 11 16 16 N 1.47425 * 104.92961 * 322.93718 * 15 14 12 17 17 C 1.36938 * 125.65179 * 204.15650 * 16 15 14 18 18 H 1.07995 * 120.00281 * 180.02562 * 17 16 15 19 19 C 1.38810 * 119.99650 * 0.02562 * 17 16 15 20 20 N 1.31621 * 120.00025 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00113 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47190 * 89.99819 * 21 19 17 23 23 H 1.48500 * 109.47472 * 210.00112 * 21 19 17 24 24 H 1.48507 * 109.46699 * 329.99987 * 21 19 17 25 25 C 1.47290 * 108.55742 * 24.15407 * 16 15 14 26 26 O 1.43737 * 107.42282 * 1.95552 * 6 5 4 27 27 H 1.08992 * 109.47241 * 182.88181 * 1 2 3 28 28 H 1.09001 * 109.47001 * 302.88465 * 1 2 3 29 29 H 1.09005 * 109.47015 * 62.88133 * 1 2 3 30 30 H 1.08999 * 110.90896 * 86.27853 * 4 2 1 31 31 H 1.09000 * 110.93809 * 322.69207 * 4 2 1 32 32 H 1.09005 * 110.48672 * 262.20589 * 5 4 2 33 33 H 1.09003 * 110.60148 * 139.61509 * 5 4 2 34 34 H 0.96994 * 119.99369 * 359.97438 * 10 8 6 35 35 H 1.09000 * 109.47310 * 60.00424 * 11 10 8 36 36 H 1.09004 * 109.47167 * 299.99783 * 11 10 8 37 37 H 1.09008 * 111.00345 * 35.78931 * 14 12 11 38 38 H 1.09000 * 111.03743 * 271.95898 * 14 12 11 39 39 H 1.09002 * 110.36632 * 81.83114 * 15 14 12 40 40 H 1.08995 * 110.36781 * 204.04351 * 15 14 12 41 41 H 0.97001 * 119.99611 * 180.02562 * 20 19 17 42 42 H 1.09004 * 109.85762 * 239.50064 * 25 16 15 43 43 H 1.08995 * 110.00297 * 118.43011 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0758 -0.7876 -1.2182 5 6 3.4795 -1.2158 -0.7252 6 6 3.3839 -1.1266 0.8103 7 1 4.0873 -0.3819 1.1827 8 6 3.6888 -2.4699 1.4214 9 8 2.8253 -3.0721 2.0237 10 7 4.9210 -3.0021 1.2988 11 6 5.2175 -4.3077 1.8934 12 6 6.6751 -4.6774 1.6113 13 1 7.3414 -3.8678 1.9090 14 6 7.0567 -5.9962 2.3341 15 6 8.2017 -6.5241 1.4341 16 7 7.7973 -6.1736 0.0604 17 6 8.2145 -6.8060 -1.0804 18 1 7.8593 -6.4717 -2.0439 19 6 9.0941 -7.8767 -0.9982 20 7 9.5267 -8.2844 0.1761 21 14 9.6639 -8.7389 -2.5542 22 1 10.8979 -8.0848 -3.0591 23 1 9.9471 -10.1655 -2.2544 24 1 8.5997 -8.6518 -3.5863 25 6 6.8704 -5.0306 0.1218 26 8 2.0396 -0.7353 1.1358 27 1 -0.3633 -1.0263 0.0517 28 1 -0.3633 0.5580 0.8630 29 1 -0.3633 0.4685 -0.9147 30 1 2.1509 -0.1447 -2.0952 31 1 1.4551 -1.6586 -1.4288 32 1 4.2407 -0.5317 -1.1004 33 1 3.6998 -2.2373 -1.0351 34 1 5.6114 -2.5206 0.8168 35 1 4.5606 -5.0620 1.4601 36 1 5.0567 -4.2613 2.9706 37 1 6.2175 -6.6918 2.3469 38 1 7.4135 -5.7993 3.3451 39 1 9.1415 -6.0345 1.6895 40 1 8.2977 -7.6049 1.5372 41 1 10.1416 -9.0324 0.2335 42 1 5.9137 -5.3054 -0.3225 43 1 7.2941 -4.1781 -0.4089 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028808156.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:18 Heat of formation + Delta-G solvation = -64.672045 kcal Electronic energy + Delta-G solvation = -22424.428336 eV Core-core repulsion = 19083.956736 eV Total energy + Delta-G solvation = -3340.471600 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.46588 -38.74152 -37.51077 -34.66383 -32.73944 -32.53144 -31.86162 -29.81491 -28.41532 -26.93986 -25.33911 -23.56670 -22.53521 -21.51727 -20.67059 -19.95798 -19.60357 -17.55461 -16.89154 -16.72971 -16.37331 -15.66825 -15.05936 -14.70039 -14.60883 -14.33200 -14.07959 -13.70429 -13.46157 -12.90696 -12.71836 -12.56739 -12.51417 -12.01362 -11.79090 -11.74876 -11.70216 -11.51845 -11.21526 -11.14277 -10.96535 -10.82325 -10.42875 -10.26190 -10.13348 -10.02098 -9.85405 -9.60756 -9.39767 -8.96572 -8.66706 -6.85341 -5.66961 -3.08827 2.61294 2.89220 3.38477 3.43375 3.45608 3.74737 4.19672 4.41953 4.47045 4.52440 4.65533 4.82292 5.01690 5.05908 5.13746 5.20068 5.25051 5.37055 5.38964 5.44883 5.51351 5.57170 5.65353 5.69249 5.77443 5.87677 5.87992 6.06423 6.10251 6.33375 6.42250 6.53061 6.57181 6.58555 6.71794 6.88963 7.49899 7.53603 7.60607 7.84340 8.25409 8.34948 9.20335 9.81157 10.46390 11.36911 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027634 B = 0.003233 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.998189 B = 8659.009312 C = 9403.776371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.068 3.932 3 H 0.073 0.927 4 C -0.149 4.149 5 C -0.149 4.149 6 C 0.061 3.939 7 H 0.093 0.907 8 C 0.510 3.490 9 O -0.525 6.525 10 N -0.723 5.723 11 C 0.133 3.867 12 C -0.114 4.114 13 H 0.076 0.924 14 C -0.135 4.135 15 C 0.151 3.849 16 N -0.605 5.605 17 C -0.223 4.223 18 H 0.077 0.923 19 C -0.012 4.012 20 N -0.922 5.922 21 Si 0.915 3.085 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.141 3.859 26 O -0.345 6.345 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.401 0.599 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.012 0.988 40 H 0.107 0.893 41 H 0.252 0.748 42 H 0.024 0.976 43 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.976 17.207 -0.086 20.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.011 3.989 3 H 0.090 0.910 4 C -0.187 4.187 5 C -0.187 4.187 6 C 0.000 4.000 7 H 0.111 0.889 8 C 0.294 3.706 9 O -0.400 6.400 10 N -0.377 5.377 11 C 0.010 3.990 12 C -0.133 4.133 13 H 0.095 0.905 14 C -0.175 4.175 15 C 0.026 3.974 16 N -0.331 5.331 17 C -0.351 4.351 18 H 0.094 0.906 19 C -0.207 4.207 20 N -0.571 5.571 21 Si 0.745 3.255 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.207 1.207 25 C 0.015 3.985 26 O -0.263 6.263 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.235 0.765 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.030 0.970 40 H 0.125 0.875 41 H 0.063 0.937 42 H 0.042 0.958 43 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -12.602 16.526 0.486 20.788 hybrid contribution 0.939 -0.071 -1.212 1.535 sum -11.663 16.454 -0.726 20.182 Atomic orbital electron populations 1.21767 0.92889 1.03364 1.02343 1.23248 0.95589 0.95189 0.84896 0.90961 1.23187 0.95861 1.01109 0.98509 1.22953 0.98717 1.04112 0.92918 1.22590 0.87270 0.94706 0.95468 0.88905 1.20422 0.82515 0.87115 0.80525 1.90717 1.46040 1.62103 1.41112 1.46011 1.12339 1.21973 1.57334 1.21475 0.96214 0.83350 0.97948 1.22443 0.93775 0.99034 0.98097 0.90537 1.23009 1.01024 0.94954 0.98471 1.21934 0.90991 1.02785 0.81652 1.44564 1.51827 1.33573 1.03138 1.19067 1.21458 1.09491 0.85089 0.90553 1.24794 0.99808 0.99018 0.97102 1.69796 1.36711 1.29295 1.21290 0.86069 0.78534 0.78876 0.81994 1.21644 1.21618 1.20698 1.21374 0.93731 0.90892 0.92462 1.89061 1.26059 1.73115 1.38107 0.91472 0.91784 0.91033 0.89768 0.90058 0.89414 0.89533 0.76512 0.91203 0.91587 0.91819 0.92089 0.97025 0.87515 0.93706 0.95816 0.96410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.66 37.16 0.36 -0.78 16 2 C 0.07 0.61 3.97 -25.67 -0.10 0.50 16 3 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 4 C -0.15 -1.19 6.59 -24.72 -0.16 -1.35 16 5 C -0.15 -1.27 6.62 -25.20 -0.17 -1.44 16 6 C 0.06 0.67 3.84 -27.31 -0.10 0.57 16 7 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 8 C 0.51 7.29 6.95 -10.98 -0.08 7.22 16 9 O -0.52 -9.93 16.53 -14.02 -0.23 -10.16 16 10 N -0.72 -9.23 5.45 -60.29 -0.33 -9.56 16 11 C 0.13 1.98 5.02 -4.04 -0.02 1.96 16 12 C -0.11 -1.87 2.96 -88.78 -0.26 -2.13 16 13 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 14 C -0.14 -2.50 6.53 -24.58 -0.16 -2.66 16 15 C 0.15 3.63 5.89 -2.53 -0.01 3.61 16 16 N -0.60 -15.34 3.40 -169.86 -0.58 -15.91 16 17 C -0.22 -6.18 10.28 -15.06 -0.15 -6.33 16 18 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 19 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 20 N -0.92 -26.81 10.09 55.49 0.56 -26.25 16 21 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 C 0.14 2.82 6.77 -2.92 -0.02 2.81 16 26 O -0.35 -4.47 10.46 -54.80 -0.57 -5.05 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.72 8.06 -51.93 -0.42 0.30 16 32 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.09 0.83 7.69 -51.93 -0.40 0.43 16 34 H 0.40 4.12 8.47 -40.82 -0.35 3.77 16 35 H 0.07 1.16 7.93 -51.93 -0.41 0.75 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.06 1.18 8.05 -51.92 -0.42 0.76 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.11 2.90 5.86 -51.93 -0.30 2.60 16 41 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.02 0.49 7.68 -51.93 -0.40 0.09 16 43 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 344.94 15.07 5.20 5.20 Total: -1.00 -33.67 344.94 -9.28 -42.95 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -7.32 Total: 0.31 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -0.98 Total: 1.54 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: -0.35 Total: -51.73 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.80 Total: -15.21 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.67 -9.28 -42.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028808156.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.723 kcal (2) G-P(sol) polarization free energy of solvation -33.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds