Wall clock time and date at job start Tue Mar 31 2020 06:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.55514 * 2 1 4 4 C 1.54997 * 110.61756 * 237.11570 * 2 1 3 5 5 C 1.54808 * 102.09167 * 204.47809 * 4 2 1 6 6 C 1.54102 * 104.18737 * 20.87969 * 5 4 2 7 7 H 1.08999 * 109.87587 * 242.45089 * 6 5 4 8 8 C 1.50702 * 109.87494 * 121.45922 * 6 5 4 9 9 O 1.21287 * 119.99234 * 245.30417 * 8 6 5 10 10 N 1.34776 * 120.00539 * 65.30410 * 8 6 5 11 11 C 1.46494 * 119.99924 * 179.97438 * 10 8 6 12 12 C 1.53003 * 109.47093 * 180.02562 * 11 10 8 13 13 H 1.08994 * 110.64092 * 51.85750 * 12 11 10 14 14 C 1.55154 * 110.72254 * 174.99951 * 12 11 10 15 15 C 1.54908 * 101.58289 * 153.86462 * 14 12 11 16 16 N 1.47425 * 104.92961 * 322.93718 * 15 14 12 17 17 C 1.36938 * 125.65179 * 204.15650 * 16 15 14 18 18 H 1.07995 * 120.00281 * 180.02562 * 17 16 15 19 19 C 1.38810 * 119.99650 * 0.02562 * 17 16 15 20 20 N 1.31621 * 120.00025 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00113 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47190 * 89.99819 * 21 19 17 23 23 H 1.48500 * 109.47472 * 210.00112 * 21 19 17 24 24 H 1.48507 * 109.46699 * 329.99987 * 21 19 17 25 25 C 1.47290 * 108.55742 * 24.15407 * 16 15 14 26 26 O 1.43737 * 107.42282 * 1.95552 * 6 5 4 27 27 H 1.08992 * 109.47241 * 182.88181 * 1 2 3 28 28 H 1.09001 * 109.47001 * 302.88465 * 1 2 3 29 29 H 1.09005 * 109.47015 * 62.88133 * 1 2 3 30 30 H 1.08999 * 110.90896 * 86.27853 * 4 2 1 31 31 H 1.09000 * 110.93809 * 322.69207 * 4 2 1 32 32 H 1.09005 * 110.48672 * 262.20589 * 5 4 2 33 33 H 1.09003 * 110.60148 * 139.61509 * 5 4 2 34 34 H 0.96994 * 119.99369 * 359.97438 * 10 8 6 35 35 H 1.09000 * 109.47310 * 60.00424 * 11 10 8 36 36 H 1.09004 * 109.47167 * 299.99783 * 11 10 8 37 37 H 1.09008 * 111.00345 * 35.78931 * 14 12 11 38 38 H 1.09000 * 111.03743 * 271.95898 * 14 12 11 39 39 H 1.09002 * 110.36632 * 81.83114 * 15 14 12 40 40 H 1.08995 * 110.36781 * 204.04351 * 15 14 12 41 41 H 0.97001 * 119.99611 * 180.02562 * 20 19 17 42 42 H 1.09004 * 109.85762 * 239.50064 * 25 16 15 43 43 H 1.08995 * 110.00297 * 118.43011 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0758 -0.7876 -1.2182 5 6 3.4795 -1.2158 -0.7252 6 6 3.3839 -1.1266 0.8103 7 1 4.0873 -0.3819 1.1827 8 6 3.6888 -2.4699 1.4214 9 8 2.8253 -3.0721 2.0237 10 7 4.9210 -3.0021 1.2988 11 6 5.2175 -4.3077 1.8934 12 6 6.6751 -4.6774 1.6113 13 1 7.3414 -3.8678 1.9090 14 6 7.0567 -5.9962 2.3341 15 6 8.2017 -6.5241 1.4341 16 7 7.7973 -6.1736 0.0604 17 6 8.2145 -6.8060 -1.0804 18 1 7.8593 -6.4717 -2.0439 19 6 9.0941 -7.8767 -0.9982 20 7 9.5267 -8.2844 0.1761 21 14 9.6639 -8.7389 -2.5542 22 1 10.8979 -8.0848 -3.0591 23 1 9.9471 -10.1655 -2.2544 24 1 8.5997 -8.6518 -3.5863 25 6 6.8704 -5.0306 0.1218 26 8 2.0396 -0.7353 1.1358 27 1 -0.3633 -1.0263 0.0517 28 1 -0.3633 0.5580 0.8630 29 1 -0.3633 0.4685 -0.9147 30 1 2.1509 -0.1447 -2.0952 31 1 1.4551 -1.6586 -1.4288 32 1 4.2407 -0.5317 -1.1004 33 1 3.6998 -2.2373 -1.0351 34 1 5.6114 -2.5206 0.8168 35 1 4.5606 -5.0620 1.4601 36 1 5.0567 -4.2613 2.9706 37 1 6.2175 -6.6918 2.3469 38 1 7.4135 -5.7993 3.3451 39 1 9.1415 -6.0345 1.6895 40 1 8.2977 -7.6049 1.5372 41 1 10.1416 -9.0324 0.2335 42 1 5.9137 -5.3054 -0.3225 43 1 7.2941 -4.1781 -0.4089 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028808156.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:18 Heat of formation + Delta-G solvation = -87.252600 kcal Electronic energy + Delta-G solvation = -22425.407503 eV Core-core repulsion = 19083.956736 eV Total energy + Delta-G solvation = -3341.450766 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.41556 -39.84286 -39.01041 -36.08447 -34.40010 -33.28315 -32.80132 -31.51749 -29.93863 -28.01078 -26.97457 -25.04851 -23.39586 -22.19528 -22.15616 -21.44554 -20.95973 -18.93829 -18.40703 -17.58355 -17.41169 -17.00722 -16.65339 -16.10895 -15.70793 -15.58591 -15.26207 -14.81437 -14.43895 -14.28678 -14.24583 -13.55010 -13.43626 -13.36484 -13.29559 -13.14409 -12.81723 -12.68833 -12.67072 -12.47542 -12.01543 -11.91237 -11.84562 -11.81332 -11.79534 -11.59041 -11.36995 -11.09193 -10.74115 -10.47591 -10.13727 -8.87833 -7.77182 -5.21350 1.46700 1.48487 1.53706 1.57177 1.91360 2.49697 2.96700 3.32451 3.46974 3.61159 3.67429 3.80899 3.87982 3.93002 3.98181 4.06869 4.21109 4.33325 4.44610 4.45236 4.59206 4.64502 4.69654 4.77851 4.80266 4.90443 4.91327 4.96837 5.00653 5.05399 5.12642 5.17336 5.27242 5.32572 5.42018 5.48423 5.66208 5.83089 5.86859 6.32231 6.52515 7.11357 7.19671 7.79202 8.43110 9.24738 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027634 B = 0.003233 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.998189 B = 8659.009312 C = 9403.776371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.061 3.939 3 H 0.096 0.904 4 C -0.147 4.147 5 C -0.145 4.145 6 C 0.062 3.938 7 H 0.124 0.876 8 C 0.506 3.494 9 O -0.579 6.579 10 N -0.710 5.710 11 C 0.144 3.856 12 C -0.092 4.092 13 H 0.100 0.900 14 C -0.124 4.124 15 C 0.152 3.848 16 N -0.629 5.629 17 C -0.238 4.238 18 H 0.081 0.919 19 C -0.069 4.069 20 N -0.950 5.950 21 Si 0.980 3.020 22 H -0.285 1.285 23 H -0.295 1.295 24 H -0.270 1.270 25 C 0.138 3.862 26 O -0.383 6.383 27 H 0.046 0.954 28 H 0.061 0.939 29 H 0.097 0.903 30 H 0.113 0.887 31 H 0.064 0.936 32 H 0.121 0.879 33 H 0.071 0.929 34 H 0.416 0.584 35 H 0.050 0.950 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.089 0.911 39 H -0.008 1.008 40 H 0.070 0.930 41 H 0.247 0.753 42 H 0.019 0.981 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.096 19.650 -1.157 23.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.004 3.996 3 H 0.114 0.886 4 C -0.185 4.185 5 C -0.183 4.183 6 C 0.001 3.999 7 H 0.142 0.858 8 C 0.293 3.707 9 O -0.458 6.458 10 N -0.364 5.364 11 C 0.020 3.980 12 C -0.111 4.111 13 H 0.118 0.882 14 C -0.163 4.163 15 C 0.027 3.973 16 N -0.355 5.355 17 C -0.367 4.367 18 H 0.099 0.901 19 C -0.262 4.262 20 N -0.600 5.600 21 Si 0.808 3.192 22 H -0.212 1.212 23 H -0.221 1.221 24 H -0.195 1.195 25 C 0.013 3.987 26 O -0.303 6.303 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.115 0.885 30 H 0.131 0.869 31 H 0.082 0.918 32 H 0.140 0.860 33 H 0.090 0.910 34 H 0.253 0.747 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.108 0.892 39 H 0.010 0.990 40 H 0.088 0.912 41 H 0.056 0.944 42 H 0.037 0.963 43 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -12.718 19.016 -0.611 22.885 hybrid contribution 0.944 -0.807 -0.884 1.525 sum -11.774 18.209 -1.495 21.735 Atomic orbital electron populations 1.21809 0.92668 1.02319 1.03601 1.23537 0.95961 0.96015 0.84048 0.88585 1.23210 0.95135 1.00920 0.99223 1.23011 1.00030 1.04217 0.91071 1.22760 0.87337 0.92967 0.96824 0.85849 1.21168 0.81918 0.88107 0.79536 1.90691 1.47644 1.63818 1.43664 1.45850 1.12581 1.21112 1.56826 1.21195 0.94526 0.83971 0.98291 1.22279 0.95151 0.98577 0.95134 0.88157 1.22855 0.98747 0.95727 0.98962 1.21723 0.92364 1.00605 0.82644 1.44889 1.52563 1.35124 1.02974 1.19454 1.21251 1.09717 0.86261 0.90139 1.25641 1.00454 1.00017 1.00046 1.70058 1.37229 1.29567 1.23126 0.85054 0.78202 0.77188 0.78746 1.21216 1.22115 1.19466 1.21553 0.92347 0.89654 0.95144 1.89032 1.27145 1.73867 1.40209 0.93500 0.91974 0.88482 0.86883 0.91760 0.86046 0.90984 0.74685 0.93194 0.90964 0.92163 0.89232 0.99040 0.91226 0.94369 0.96264 0.94868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.66 71.98 0.70 -1.41 16 2 C 0.06 0.95 3.97 31.28 0.12 1.08 16 3 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 4 C -0.15 -1.98 6.59 31.89 0.21 -1.77 16 5 C -0.15 -2.06 6.62 31.58 0.21 -1.85 16 6 C 0.06 1.22 3.84 30.22 0.12 1.34 16 7 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 8 C 0.51 13.90 6.95 87.66 0.61 14.51 16 9 O -0.58 -22.09 16.53 15.66 0.26 -21.83 16 10 N -0.71 -16.66 5.45 -463.05 -2.52 -19.18 16 11 C 0.14 4.06 5.02 86.38 0.43 4.49 16 12 C -0.09 -2.83 2.96 -9.60 -0.03 -2.86 16 13 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 14 C -0.12 -4.44 6.53 31.98 0.21 -4.23 16 15 C 0.15 7.38 5.89 86.85 0.51 7.89 16 16 N -0.63 -31.99 3.40 -691.31 -2.35 -34.35 16 17 C -0.24 -13.27 10.28 84.03 0.86 -12.41 16 18 H 0.08 4.29 7.83 -2.91 -0.02 4.26 16 19 C -0.07 -3.93 5.49 84.86 0.47 -3.46 16 20 N -0.95 -56.71 10.09 21.65 0.22 -56.49 16 21 Si 0.98 45.51 29.55 68.60 2.03 47.53 16 22 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 23 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 24 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 25 C 0.14 5.33 6.77 86.68 0.59 5.91 16 26 O -0.38 -9.49 10.46 -130.27 -1.36 -10.85 16 27 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.06 1.07 8.06 -2.39 -0.02 1.05 16 32 H 0.12 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.07 1.24 7.69 -2.39 -0.02 1.23 16 34 H 0.42 7.22 8.47 -92.71 -0.79 6.44 16 35 H 0.05 1.63 7.93 -2.39 -0.02 1.61 16 36 H 0.07 2.00 8.14 -2.38 -0.02 1.99 16 37 H 0.06 2.20 8.05 -2.38 -0.02 2.18 16 38 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 39 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 40 H 0.07 3.93 5.86 -2.39 -0.01 3.91 16 41 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 42 H 0.02 0.77 7.68 -2.38 -0.02 0.75 16 43 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -75.94 344.94 1.47 -74.47 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 0.20 Total: 13.47 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: 5.00 Total: 7.22 kcal Atomic # 7 Polarization: -105.36 SS G_CDS: -4.66 Total: -110.02 kcal Atomic # 8 Polarization: -31.58 SS G_CDS: -1.10 Total: -32.68 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.53 kcal Total: -75.94 1.47 -74.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028808156.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.785 kcal (2) G-P(sol) polarization free energy of solvation -75.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds