Wall clock time and date at job start Tue Mar 31 2020 07:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.47936 * 2 1 4 4 O 1.42900 * 109.49221 * 239.97018 * 2 1 3 5 5 C 1.42906 * 114.09690 * 178.85064 * 4 2 1 6 6 C 1.53094 * 109.41383 * 61.15913 * 5 4 2 7 7 C 1.53172 * 109.16356 * 302.38967 * 6 5 4 8 8 C 1.53094 * 109.47892 * 120.01807 * 2 1 3 9 9 H 1.08995 * 109.52438 * 297.51191 * 8 2 1 10 10 C 1.50697 * 109.52304 * 57.70311 * 8 2 1 11 11 O 1.21286 * 119.99629 * 359.97438 * 10 8 2 12 12 N 1.34776 * 120.00005 * 179.97438 * 10 8 2 13 13 C 1.46506 * 119.99675 * 180.02562 * 12 10 8 14 14 C 1.53000 * 109.46889 * 179.97438 * 13 12 10 15 15 C 1.53940 * 113.74344 * 271.67519 * 14 13 12 16 16 N 1.47581 * 86.11867 * 222.04677 * 15 14 13 17 17 C 1.36933 * 134.49588 * 204.63732 * 16 15 14 18 18 H 1.07996 * 120.00336 * 173.47730 * 17 16 15 19 19 C 1.38820 * 119.99838 * 353.48523 * 17 16 15 20 20 N 1.31615 * 119.99899 * 5.06035 * 19 17 16 21 21 Si 1.86800 * 119.99941 * 185.06490 * 19 17 16 22 22 H 1.48497 * 109.47077 * 94.98605 * 21 19 17 23 23 H 1.48499 * 109.46906 * 214.98722 * 21 19 17 24 24 H 1.48507 * 109.47048 * 334.98487 * 21 19 17 25 25 C 1.47587 * 91.01112 * 24.63844 * 16 15 14 26 26 H 1.09001 * 109.47716 * 299.99756 * 1 2 3 27 27 H 1.09004 * 109.47505 * 60.00345 * 1 2 3 28 28 H 1.09006 * 109.46765 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.48241 * 301.17239 * 5 4 2 30 30 H 1.08997 * 109.48165 * 181.13993 * 5 4 2 31 31 H 1.09004 * 109.51956 * 182.48554 * 6 5 4 32 32 H 1.08996 * 109.52267 * 62.29568 * 6 5 4 33 33 H 1.09005 * 109.54737 * 297.11621 * 7 6 5 34 34 H 1.09004 * 109.62160 * 176.89184 * 7 6 5 35 35 H 0.96995 * 120.00331 * 359.97438 * 12 10 8 36 36 H 1.08999 * 109.46858 * 300.00059 * 13 12 10 37 37 H 1.08995 * 109.47269 * 60.00259 * 13 12 10 38 38 H 1.09009 * 112.94150 * 43.40751 * 14 13 12 39 39 H 1.08999 * 113.76720 * 336.34681 * 15 14 13 40 40 H 1.08997 * 113.77488 * 107.74490 * 15 14 13 41 41 H 0.97000 * 120.00410 * 180.02562 * 20 19 17 42 42 H 1.08996 * 113.76691 * 221.05705 * 25 16 15 43 43 H 1.08996 * 113.87119 * 89.67604 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 8 2.0068 -0.6742 -1.1663 5 6 3.4310 -0.7090 -1.2788 6 6 4.0179 -1.4595 -0.0805 7 6 3.5711 -0.7704 1.2124 8 6 2.0405 -0.7221 1.2497 9 1 1.7146 -0.1841 2.1399 10 6 1.4929 -2.1257 1.2793 11 8 0.7653 -2.5117 0.3890 12 7 1.8118 -2.9522 2.2951 13 6 1.2800 -4.3170 2.3235 14 6 1.7918 -5.0378 3.5722 15 6 3.1420 -5.7484 3.3680 16 7 2.5589 -6.8621 4.1411 17 6 3.0760 -7.8764 4.9019 18 1 2.4159 -8.5211 5.4631 19 6 4.4489 -8.0760 4.9520 20 7 5.2590 -7.2314 4.3497 21 14 5.1464 -9.5431 5.8741 22 1 5.3753 -10.6614 4.9243 23 1 6.4333 -9.1621 6.5096 24 1 4.1850 -9.9721 6.9216 25 6 1.1946 -6.4436 3.7648 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.8193 0.3094 -1.2956 30 1 3.7105 -1.2199 -2.2001 31 1 5.1062 -1.4490 -0.1416 32 1 3.6618 -2.4897 -0.0859 33 1 3.9687 0.2442 1.2411 34 1 3.9392 -1.3306 2.0720 35 1 2.3940 -2.6436 3.0069 36 1 0.1907 -4.2820 2.3444 37 1 1.6093 -4.8539 1.4339 38 1 1.7513 -4.4174 4.4676 39 1 3.3539 -5.9987 2.3286 40 1 3.9771 -5.2569 3.8672 41 1 6.2183 -7.3710 4.3843 42 1 0.4748 -6.5072 4.5808 43 1 0.8327 -6.8973 2.8422 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031637553.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:28 Heat of formation + Delta-G solvation = -35.673606 kcal Electronic energy + Delta-G solvation = -22993.925495 eV Core-core repulsion = 19654.711362 eV Total energy + Delta-G solvation = -3339.214133 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.64796 -38.52963 -37.66942 -34.52478 -33.71761 -32.67919 -32.14203 -29.08511 -27.85713 -25.89400 -24.82218 -24.58859 -22.53992 -22.07372 -21.39497 -19.84243 -18.71231 -17.01504 -16.69274 -16.40625 -15.93169 -15.74678 -15.24404 -14.91579 -14.66336 -14.33028 -13.88728 -13.72744 -13.31965 -13.05792 -12.80240 -12.47630 -12.45311 -12.30778 -12.03891 -11.73089 -11.42524 -11.33505 -11.14406 -10.99988 -10.81566 -10.73917 -10.56009 -10.48050 -9.94648 -9.76279 -9.60523 -9.46313 -9.20429 -8.80895 -8.70851 -6.87814 -5.80099 -3.11015 2.83649 3.34623 3.38047 3.43410 3.44997 3.77755 4.44507 4.45600 4.56615 4.62957 4.81085 4.93661 5.14060 5.18809 5.24961 5.25182 5.32034 5.36149 5.44234 5.50822 5.58009 5.63793 5.67599 5.75894 5.84913 5.92182 5.95670 6.06146 6.10832 6.26046 6.34546 6.43204 6.59412 6.67900 6.81708 7.20263 7.25106 7.33508 7.54438 7.73769 7.96354 8.47359 9.03175 9.69115 10.59464 11.37741 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030234 B = 0.003539 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.876929 B = 7908.918732 C = 8493.477723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.112 3.888 3 H 0.058 0.942 4 O -0.362 6.362 5 C 0.060 3.940 6 C -0.160 4.160 7 C -0.114 4.114 8 C -0.144 4.144 9 H 0.102 0.898 10 C 0.518 3.482 11 O -0.524 6.524 12 N -0.724 5.724 13 C 0.131 3.869 14 C -0.153 4.153 15 C 0.173 3.827 16 N -0.613 5.613 17 C -0.224 4.224 18 H 0.080 0.920 19 C -0.007 4.007 20 N -0.920 5.920 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.280 1.280 25 C 0.127 3.873 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.098 0.902 29 H 0.046 0.954 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.399 0.601 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.088 0.912 39 H 0.028 0.972 40 H 0.067 0.933 41 H 0.253 0.747 42 H 0.044 0.956 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.791 17.560 -6.647 19.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.053 3.947 3 H 0.076 0.924 4 O -0.280 6.280 5 C -0.017 4.017 6 C -0.198 4.198 7 C -0.152 4.152 8 C -0.166 4.166 9 H 0.120 0.880 10 C 0.304 3.696 11 O -0.400 6.400 12 N -0.376 5.376 13 C 0.007 3.993 14 C -0.173 4.173 15 C 0.047 3.953 16 N -0.339 5.339 17 C -0.352 4.352 18 H 0.098 0.902 19 C -0.204 4.204 20 N -0.567 5.567 21 Si 0.740 3.260 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.205 1.205 25 C 0.000 4.000 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.117 0.883 29 H 0.064 0.936 30 H 0.110 0.890 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.233 0.767 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.107 0.893 39 H 0.046 0.954 40 H 0.085 0.915 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.194 16.970 -7.272 19.179 hybrid contribution 1.115 -0.653 1.046 1.662 sum -4.078 16.317 -6.226 17.934 Atomic orbital electron populations 1.22102 0.92802 1.05832 1.01299 1.21783 0.95698 0.93358 0.83839 0.92395 1.88068 1.20107 1.77835 1.42027 1.22553 0.81741 0.98981 0.98433 1.22219 1.01362 1.01164 0.95068 1.21598 0.92746 1.01798 0.99017 1.22115 0.97536 0.95350 1.01584 0.87970 1.20240 0.80874 0.86842 0.81655 1.90629 1.36593 1.76373 1.36433 1.46102 1.51583 1.14081 1.25823 1.21411 0.97950 0.80868 0.99025 1.23809 1.01166 0.96176 0.96176 1.22237 0.92589 0.86013 0.94429 1.45924 1.00576 1.32196 1.55159 1.19044 0.90536 1.06159 1.19445 0.90210 1.24814 0.95820 0.99006 1.00714 1.69828 1.02466 1.36570 1.47831 0.86137 0.78493 0.82384 0.79012 1.21608 1.21704 1.20535 1.22501 0.90003 0.90261 0.97190 0.92047 0.92374 0.88324 0.93550 0.88991 0.90467 0.90619 0.90834 0.90501 0.76720 0.92102 0.91553 0.89338 0.95425 0.91491 0.93667 0.93753 0.94662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.21 37.16 0.34 -1.48 16 2 C 0.11 1.23 2.84 -26.68 -0.08 1.16 16 3 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 4 O -0.36 -4.86 9.46 -51.93 -0.49 -5.35 16 5 C 0.06 0.63 6.84 37.21 0.25 0.88 16 6 C -0.16 -1.70 5.87 -26.59 -0.16 -1.86 16 7 C -0.11 -1.06 5.46 -26.55 -0.14 -1.20 16 8 C -0.14 -1.50 2.60 -91.63 -0.24 -1.74 16 9 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 10 C 0.52 7.18 5.63 -10.99 -0.06 7.11 16 11 O -0.52 -9.10 12.90 -11.14 -0.14 -9.24 16 12 N -0.72 -9.70 5.44 -60.29 -0.33 -10.03 16 13 C 0.13 2.05 5.53 -4.04 -0.02 2.02 16 14 C -0.15 -2.72 3.94 -89.70 -0.35 -3.07 16 15 C 0.17 3.95 6.98 -2.98 -0.02 3.93 16 16 N -0.61 -15.68 3.70 -177.92 -0.66 -16.34 16 17 C -0.22 -6.32 10.70 -15.06 -0.16 -6.48 16 18 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 19 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 20 N -0.92 -27.14 11.51 55.49 0.64 -26.50 16 21 Si 0.91 22.09 29.56 -169.99 -5.02 17.07 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 C 0.13 2.57 8.50 -2.97 -0.03 2.54 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.10 1.40 5.32 -51.93 -0.28 1.12 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 1.02 7.39 -51.93 -0.38 0.64 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.70 7.51 -51.93 -0.39 0.31 16 35 H 0.40 4.60 7.88 -40.82 -0.32 4.28 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.07 1.15 7.83 -51.93 -0.41 0.75 16 38 H 0.09 1.49 8.14 -51.92 -0.42 1.07 16 39 H 0.03 0.67 7.89 -51.93 -0.41 0.26 16 40 H 0.07 1.67 7.35 -51.93 -0.38 1.29 16 41 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 42 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.04 0.70 8.10 -51.93 -0.42 0.28 16 LS Contribution 338.47 15.07 5.10 5.10 Total: -1.00 -33.18 338.47 -8.85 -42.03 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -7.19 Total: 1.74 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -0.76 Total: 1.53 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: -0.35 Total: -52.88 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -0.64 Total: -14.59 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.18 -8.85 -42.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031637553.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.358 kcal (2) G-P(sol) polarization free energy of solvation -33.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds