Wall clock time and date at job start Tue Mar 31 2020 07:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.49404 * 2 1 4 4 O 1.42904 * 109.48012 * 120.03194 * 2 1 3 5 5 C 1.42907 * 114.09714 * 181.13989 * 4 2 1 6 6 C 1.53097 * 109.41274 * 298.84370 * 5 4 2 7 7 C 1.53174 * 109.16576 * 57.60987 * 6 5 4 8 8 C 1.53099 * 109.48000 * 239.97233 * 2 1 3 9 9 H 1.08997 * 109.57037 * 302.34763 * 8 2 1 10 10 C 1.50704 * 109.51962 * 62.50172 * 8 2 1 11 11 O 1.21275 * 119.99953 * 359.68644 * 10 8 2 12 12 N 1.34778 * 119.99879 * 179.68409 * 10 8 2 13 13 C 1.46499 * 119.99917 * 180.02562 * 12 10 8 14 14 C 1.52998 * 109.46697 * 179.97438 * 13 12 10 15 15 C 1.53504 * 114.20339 * 185.00110 * 14 13 12 16 16 N 1.47066 * 88.04678 * 220.37609 * 15 14 13 17 17 C 1.36941 * 136.05541 * 207.05070 * 16 15 14 18 18 H 1.07998 * 119.99878 * 0.02562 * 17 16 15 19 19 C 1.38809 * 119.99593 * 180.02562 * 17 16 15 20 20 N 1.31622 * 120.00459 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 119.99771 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46679 * 89.99981 * 21 19 17 23 23 H 1.48491 * 109.47288 * 209.99798 * 21 19 17 24 24 H 1.48502 * 109.47105 * 330.00301 * 21 19 17 25 25 C 1.47064 * 87.88659 * 27.09306 * 16 15 14 26 26 H 1.08998 * 109.47008 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46729 * 300.02594 * 1 2 3 28 28 H 1.09001 * 109.46954 * 60.02821 * 1 2 3 29 29 H 1.09000 * 109.48180 * 178.86203 * 5 4 2 30 30 H 1.08997 * 109.48086 * 58.82189 * 5 4 2 31 31 H 1.08999 * 109.52357 * 297.69786 * 6 5 4 32 32 H 1.08999 * 109.51708 * 177.51485 * 6 5 4 33 33 H 1.08997 * 109.54266 * 183.15149 * 7 6 5 34 34 H 1.08995 * 109.54555 * 62.88625 * 7 6 5 35 35 H 0.96999 * 119.99884 * 0.02562 * 12 10 8 36 36 H 1.09003 * 109.46931 * 60.00298 * 13 12 10 37 37 H 1.08994 * 109.46851 * 300.00249 * 13 12 10 38 38 H 1.09002 * 113.41822 * 318.20068 * 14 13 12 39 39 H 1.09002 * 113.46865 * 105.56705 * 15 14 13 40 40 H 1.08999 * 113.46581 * 335.18480 * 15 14 13 41 41 H 0.97000 * 120.00117 * 180.02562 * 20 19 17 42 42 H 1.08999 * 113.47096 * 87.65665 * 25 16 15 43 43 H 1.09005 * 113.46966 * 218.04058 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 8 2.0066 -0.6743 1.1664 5 6 3.4307 -0.7094 1.2790 6 6 4.0176 -1.4601 0.0807 7 6 3.5711 -0.7708 -1.2122 8 6 2.0406 -0.7223 -1.2496 9 1 1.6443 -1.7374 -1.2721 10 6 1.5902 0.0216 -2.4805 11 8 0.9213 1.0272 -2.3705 12 7 1.9308 -0.4308 -3.7036 13 6 1.4935 0.2926 -4.9001 14 6 2.0114 -0.4255 -6.1478 15 6 1.7177 0.3083 -7.4637 16 7 1.4121 -0.9983 -8.0657 17 6 1.4532 -1.5382 -9.3235 18 1 1.7789 -0.9365 -10.1590 19 6 1.0761 -2.8590 -9.5243 20 7 0.6787 -3.5922 -8.5060 21 14 1.1328 -3.5958 -11.2400 22 1 2.4683 -4.2014 -11.4747 23 1 0.0862 -4.6418 -11.3643 24 1 0.8892 -2.5299 -12.2448 25 6 1.0420 -1.4694 -6.7226 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5142 0.8897 28 1 -0.3633 0.5134 -0.8903 29 1 3.7100 -1.2205 2.2004 30 1 3.8193 0.3088 1.2958 31 1 3.6613 -2.4902 0.0862 32 1 5.1058 -1.4498 0.1420 33 1 3.9392 -1.3326 -2.0707 34 1 3.9690 0.2435 -1.2409 35 1 2.4655 -1.2353 -3.7915 36 1 1.8887 1.3082 -4.8754 37 1 0.4044 0.3271 -4.9259 38 1 3.0391 -0.7754 -6.0510 39 1 2.5938 0.7913 -7.8964 40 1 0.8553 0.9725 -7.4072 41 1 0.4156 -4.5152 -8.6464 42 1 -0.0005 -1.2791 -6.4677 43 1 1.3429 -2.4984 -6.5253 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031637554.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:31 Heat of formation + Delta-G solvation = -38.930929 kcal Electronic energy + Delta-G solvation = -22515.077551 eV Core-core repulsion = 19175.722170 eV Total energy + Delta-G solvation = -3339.355381 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.57582 -38.84744 -38.03645 -34.62318 -33.89153 -32.73842 -32.21039 -29.23300 -27.94130 -26.02253 -24.82884 -24.59129 -22.64325 -21.96351 -21.12454 -20.16595 -19.07494 -17.32677 -16.81295 -16.56466 -15.86934 -15.47638 -15.41525 -14.95217 -14.82426 -14.56381 -14.01017 -13.86753 -13.50470 -13.05977 -12.95740 -12.70685 -12.43302 -12.34558 -12.07494 -11.56322 -11.48843 -11.31586 -11.24949 -11.18474 -11.03368 -10.81176 -10.63055 -10.56750 -10.03810 -9.84367 -9.77217 -9.49929 -9.26054 -8.86485 -8.81842 -6.92142 -5.80830 -3.13373 2.66201 3.18639 3.36627 3.41470 3.43608 3.67902 4.38044 4.42088 4.47155 4.51423 4.66571 4.89049 5.01998 5.09689 5.18726 5.23276 5.28720 5.32863 5.35553 5.44477 5.55587 5.58708 5.65393 5.68558 5.81185 5.83813 5.85798 5.99862 6.01231 6.18904 6.27498 6.37343 6.49946 6.61835 6.71956 7.03005 7.16638 7.29711 7.50051 7.60679 7.93687 8.29014 8.99998 9.66460 10.59962 11.36741 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030796 B = 0.003089 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.000799 B = 9063.310931 C = 9320.987407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.110 3.890 3 H 0.065 0.935 4 O -0.379 6.379 5 C 0.058 3.942 6 C -0.155 4.155 7 C -0.115 4.115 8 C -0.140 4.140 9 H 0.106 0.894 10 C 0.519 3.481 11 O -0.543 6.543 12 N -0.719 5.719 13 C 0.133 3.867 14 C -0.160 4.160 15 C 0.128 3.872 16 N -0.611 5.611 17 C -0.219 4.219 18 H 0.081 0.919 19 C -0.008 4.008 20 N -0.920 5.920 21 Si 0.914 3.086 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.162 3.838 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.402 0.598 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.093 0.907 39 H 0.041 0.959 40 H 0.035 0.965 41 H 0.254 0.746 42 H 0.025 0.975 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.388 5.179 18.533 20.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.052 3.948 3 H 0.083 0.917 4 O -0.298 6.298 5 C -0.019 4.019 6 C -0.192 4.192 7 C -0.153 4.153 8 C -0.162 4.162 9 H 0.124 0.876 10 C 0.305 3.695 11 O -0.421 6.421 12 N -0.369 5.369 13 C 0.009 3.991 14 C -0.180 4.180 15 C 0.001 3.999 16 N -0.337 5.337 17 C -0.346 4.346 18 H 0.099 0.901 19 C -0.205 4.205 20 N -0.567 5.567 21 Si 0.744 3.256 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.206 1.206 25 C 0.036 3.964 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.114 0.886 29 H 0.112 0.888 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.236 0.764 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.111 0.889 39 H 0.059 0.941 40 H 0.052 0.948 41 H 0.064 0.936 42 H 0.043 0.957 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.726 5.556 18.435 20.087 hybrid contribution 0.396 -0.827 -1.259 1.557 sum 6.122 4.729 17.176 18.838 Atomic orbital electron populations 1.21985 0.92318 1.02709 1.03976 1.21799 0.95749 0.94533 0.82690 0.91672 1.87966 1.20757 1.78243 1.42836 1.22583 0.81405 0.99595 0.98295 1.22199 1.01333 1.00754 0.94951 1.21599 0.93002 1.01877 0.98777 1.22034 0.97723 1.02051 0.94407 0.87595 1.20303 0.79707 0.84988 0.84513 1.90644 1.38964 1.25771 1.86723 1.46084 1.55000 1.30100 1.05729 1.21370 0.99773 0.95177 0.82748 1.23637 1.01157 1.00762 0.92427 1.22306 0.97423 0.90398 0.89736 1.45535 1.76798 1.07284 1.04045 1.18944 1.38303 0.94286 0.83047 0.90079 1.24803 1.01431 0.96506 0.97740 1.69823 1.49908 1.08073 1.28941 0.86097 0.77344 0.78827 0.83350 1.21483 1.21595 1.20645 1.22174 0.93624 0.97148 0.83482 0.92431 0.92169 0.88610 0.88832 0.93208 0.90627 0.90435 0.90535 0.91192 0.76386 0.91878 0.91316 0.88927 0.94061 0.94760 0.93631 0.95687 0.91144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.28 37.16 0.34 -1.44 16 2 C 0.11 1.25 2.40 -26.68 -0.06 1.19 16 3 H 0.07 0.78 8.04 -51.93 -0.42 0.36 16 4 O -0.38 -4.21 10.41 -35.23 -0.37 -4.57 16 5 C 0.06 0.47 6.84 37.21 0.25 0.72 16 6 C -0.15 -1.13 6.14 -26.59 -0.16 -1.29 16 7 C -0.11 -0.98 5.18 -26.55 -0.14 -1.12 16 8 C -0.14 -1.49 2.23 -91.63 -0.20 -1.69 16 9 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 10 C 0.52 6.90 6.88 -10.98 -0.08 6.82 16 11 O -0.54 -8.85 13.81 5.56 0.08 -8.78 16 12 N -0.72 -9.29 5.46 -60.30 -0.33 -9.62 16 13 C 0.13 2.00 5.59 -4.04 -0.02 1.97 16 14 C -0.16 -2.78 4.11 -90.04 -0.37 -3.15 16 15 C 0.13 2.57 8.26 -8.50 -0.07 2.50 16 16 N -0.61 -15.58 3.78 -184.55 -0.70 -16.28 16 17 C -0.22 -6.12 10.75 -15.06 -0.16 -6.29 16 18 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 19 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 20 N -0.92 -27.11 11.51 55.49 0.64 -26.47 16 21 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 C 0.16 3.67 6.98 -8.44 -0.06 3.61 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.10 1.27 5.73 -51.93 -0.30 0.98 16 29 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.59 7.67 -51.93 -0.40 0.19 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.40 4.50 7.96 -40.82 -0.32 4.17 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 1.13 7.81 -51.93 -0.41 0.72 16 38 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 39 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.03 0.67 8.10 -51.93 -0.42 0.25 16 41 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 42 H 0.03 0.59 7.87 -51.93 -0.41 0.18 16 43 H 0.07 1.77 7.12 -51.93 -0.37 1.40 16 LS Contribution 341.98 15.07 5.15 5.15 Total: -1.00 -32.26 341.98 -8.61 -40.88 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -7.24 Total: 1.22 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -0.83 Total: 1.51 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: -0.39 Total: -52.37 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: -0.29 Total: -13.35 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.26 -8.61 -40.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031637554.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.946 kcal (2) G-P(sol) polarization free energy of solvation -32.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds