Wall clock time and date at job start Tue Mar 31 2020 07:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.49323 * 2 1 4 4 O 1.42905 * 109.47732 * 120.02488 * 2 1 3 5 5 C 1.42903 * 114.09916 * 181.14489 * 4 2 1 6 6 C 1.53093 * 109.41343 * 298.84165 * 5 4 2 7 7 C 1.53177 * 109.16598 * 57.60770 * 6 5 4 8 8 C 1.53092 * 109.48663 * 239.96424 * 2 1 3 9 9 H 1.09008 * 109.51807 * 62.43890 * 8 2 1 10 10 C 1.50695 * 109.52067 * 302.31852 * 8 2 1 11 11 O 1.21279 * 120.00371 * 359.97438 * 10 8 2 12 12 N 1.34780 * 119.99947 * 179.97438 * 10 8 2 13 13 C 1.46497 * 120.00226 * 180.02562 * 12 10 8 14 14 C 1.52998 * 109.47252 * 179.97438 * 13 12 10 15 15 C 1.53494 * 114.20647 * 184.99751 * 14 13 12 16 16 N 1.47066 * 87.98838 * 220.34236 * 15 14 13 17 17 C 1.36934 * 136.06273 * 207.08662 * 16 15 14 18 18 H 1.08005 * 119.99669 * 6.75967 * 17 16 15 19 19 C 1.38808 * 120.00371 * 186.76254 * 17 16 15 20 20 N 1.31617 * 120.00465 * 172.25250 * 19 17 16 21 21 Si 1.86808 * 119.99797 * 352.25294 * 19 17 16 22 22 H 1.48497 * 109.47148 * 175.35909 * 21 19 17 23 23 H 1.48502 * 109.46790 * 55.36310 * 21 19 17 24 24 H 1.48493 * 109.47253 * 295.36384 * 21 19 17 25 25 C 1.47076 * 87.88201 * 27.34329 * 16 15 14 26 26 H 1.08998 * 109.47002 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47369 * 300.03273 * 1 2 3 28 28 H 1.09005 * 109.46844 * 60.03572 * 1 2 3 29 29 H 1.09000 * 109.48334 * 58.81951 * 5 4 2 30 30 H 1.09000 * 109.48652 * 178.85871 * 5 4 2 31 31 H 1.09006 * 109.52471 * 177.51602 * 6 5 4 32 32 H 1.08998 * 109.52321 * 297.70116 * 6 5 4 33 33 H 1.08997 * 109.54587 * 183.15817 * 7 6 5 34 34 H 1.09000 * 109.54301 * 62.88711 * 7 6 5 35 35 H 0.97004 * 119.99800 * 359.97438 * 12 10 8 36 36 H 1.09001 * 109.47287 * 59.99455 * 13 12 10 37 37 H 1.09005 * 109.47224 * 299.99966 * 13 12 10 38 38 H 1.09001 * 113.27960 * 318.06257 * 14 13 12 39 39 H 1.09003 * 113.46658 * 105.56518 * 15 14 13 40 40 H 1.08999 * 113.52292 * 335.13325 * 15 14 13 41 41 H 0.97005 * 119.99450 * 4.88054 * 20 19 17 42 42 H 1.08991 * 113.46561 * 87.43594 * 25 16 15 43 43 H 1.08994 * 113.46490 * 217.87899 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 8 2.0065 -0.6741 1.1665 5 6 3.4306 -0.7092 1.2793 6 6 4.0176 -1.4601 0.0812 7 6 3.5712 -0.7710 -1.2119 8 6 2.0407 -0.7224 -1.2494 9 1 1.7140 -0.1851 -2.1399 10 6 1.4928 -2.1259 -1.2789 11 8 0.7656 -2.5119 -0.3883 12 7 1.8109 -2.9523 -2.2949 13 6 1.2779 -4.3166 -2.3239 14 6 1.7880 -5.0370 -3.5735 15 6 1.1980 -6.4395 -3.7764 16 7 2.5345 -6.8840 -4.1995 17 6 3.0358 -7.8645 -5.0134 18 1 2.3655 -8.4678 -5.6078 19 6 4.4051 -8.0832 -5.0745 20 7 4.8774 -9.1192 -5.7348 21 14 5.5778 -6.9070 -4.2195 22 1 6.9666 -7.4190 -4.3384 23 1 5.2113 -6.7987 -2.7845 24 1 5.4876 -5.5683 -4.8557 25 6 3.0962 -5.8160 -3.3587 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5143 0.8897 28 1 -0.3633 0.5133 -0.8904 29 1 3.8192 0.3090 1.2959 30 1 3.7099 -1.2202 2.2007 31 1 5.1059 -1.4498 0.1425 32 1 3.6613 -2.4902 0.0867 33 1 3.9392 -1.3329 -2.0704 34 1 3.9690 0.2434 -1.2406 35 1 2.3923 -2.6435 -3.0074 36 1 0.1887 -4.2808 -2.3447 37 1 1.6067 -4.8541 -1.4344 38 1 1.7737 -4.4126 -4.4668 39 1 0.4533 -6.4863 -4.5709 40 1 0.8578 -6.9062 -2.8520 41 1 4.2750 -9.6896 -6.2375 42 1 3.2567 -6.1176 -2.3237 43 1 3.9685 -5.3317 -3.7974 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031637555.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:35 Heat of formation + Delta-G solvation = -26.635289 kcal Electronic energy + Delta-G solvation = -23126.467707 eV Core-core repulsion = 19787.645505 eV Total energy + Delta-G solvation = -3338.822202 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.78611 -38.94946 -37.99861 -34.72393 -33.86185 -32.78758 -32.39348 -29.46341 -28.03139 -25.94463 -25.37774 -24.69325 -22.53316 -22.00565 -21.33815 -20.02262 -19.06755 -17.50939 -17.10361 -16.53705 -16.16234 -15.89322 -15.52265 -15.33736 -14.74013 -14.40761 -14.10062 -13.81118 -13.49399 -13.20891 -13.12393 -12.79155 -12.61214 -12.50618 -12.17073 -11.94397 -11.83119 -11.54091 -11.26843 -11.09194 -10.92927 -10.85635 -10.60044 -10.46568 -10.30453 -9.72354 -9.38958 -9.25175 -9.18365 -8.88893 -8.85684 -7.16744 -6.34949 -3.25117 2.69084 3.18011 3.35569 3.40713 3.61675 3.67242 4.33502 4.44543 4.49923 4.56309 4.68440 4.69332 4.81364 4.94612 5.05339 5.13201 5.14359 5.20623 5.34106 5.39273 5.46592 5.52164 5.54290 5.55442 5.63626 5.80255 5.82943 5.86409 5.95631 6.02100 6.13066 6.20384 6.23208 6.32333 6.36812 6.60931 6.88065 7.09055 7.15278 7.55922 8.21378 8.31688 8.95385 9.47915 10.34312 11.18101 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026953 B = 0.004092 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.593176 B = 6840.768797 C = 7537.503296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.111 3.889 3 H 0.059 0.941 4 O -0.361 6.361 5 C 0.060 3.940 6 C -0.161 4.161 7 C -0.114 4.114 8 C -0.144 4.144 9 H 0.103 0.897 10 C 0.519 3.481 11 O -0.521 6.521 12 N -0.728 5.728 13 C 0.132 3.868 14 C -0.146 4.146 15 C 0.133 3.867 16 N -0.629 5.629 17 C -0.306 4.306 18 H 0.083 0.917 19 C -0.026 4.026 20 N -0.934 5.934 21 Si 1.073 2.927 22 H -0.295 1.295 23 H -0.287 1.287 24 H -0.295 1.295 25 C 0.105 3.895 26 H 0.098 0.902 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.047 0.953 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.399 0.601 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.098 0.902 39 H 0.047 0.953 40 H 0.041 0.959 41 H 0.261 0.739 42 H 0.046 0.954 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.618 22.239 10.250 24.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.053 3.947 3 H 0.077 0.923 4 O -0.280 6.280 5 C -0.017 4.017 6 C -0.199 4.199 7 C -0.152 4.152 8 C -0.166 4.166 9 H 0.121 0.879 10 C 0.304 3.696 11 O -0.397 6.397 12 N -0.380 5.380 13 C 0.008 3.992 14 C -0.166 4.166 15 C 0.005 3.995 16 N -0.357 5.357 17 C -0.432 4.432 18 H 0.101 0.899 19 C -0.224 4.224 20 N -0.577 5.577 21 Si 0.906 3.094 22 H -0.222 1.222 23 H -0.214 1.214 24 H -0.223 1.223 25 C -0.020 4.020 26 H 0.116 0.884 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.111 0.889 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.233 0.767 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.116 0.884 39 H 0.065 0.935 40 H 0.058 0.942 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.584 21.887 11.206 24.849 hybrid contribution -1.028 -0.106 -1.043 1.468 sum -4.612 21.781 10.163 24.474 Atomic orbital electron populations 1.22100 0.92729 1.05810 1.01398 1.21793 0.95754 0.93412 0.83753 0.92288 1.88076 1.20083 1.77820 1.42018 1.22552 0.81760 0.99044 0.98373 1.22233 1.01388 1.01101 0.95168 1.21605 0.92782 1.01909 0.98911 1.22121 0.97492 0.95227 1.01744 0.87859 1.20264 0.80842 0.86856 0.81589 1.90639 1.36382 1.76295 1.36345 1.46113 1.51851 1.14073 1.25940 1.21342 0.98458 0.80968 0.98422 1.23547 0.99573 0.96525 0.96921 1.22248 0.90198 0.89511 0.97496 1.45949 1.01954 1.37108 1.50716 1.20143 0.93060 1.10747 1.19236 0.89944 1.25743 0.95111 0.99810 1.01764 1.70920 1.37747 1.14585 1.34433 0.83652 0.75785 0.74218 0.75743 1.22239 1.21405 1.22301 1.22851 0.94992 0.88894 0.95294 0.88369 0.92287 0.92006 0.93466 0.88939 0.90440 0.90713 0.90639 0.90677 0.76738 0.91462 0.91288 0.88353 0.93475 0.94164 0.92902 0.93675 0.93357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.21 37.16 0.34 -1.35 16 2 C 0.11 1.13 2.84 -26.69 -0.08 1.05 16 3 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 4 O -0.36 -4.51 9.46 -51.94 -0.49 -5.00 16 5 C 0.06 0.57 6.84 37.21 0.25 0.82 16 6 C -0.16 -1.51 5.87 -26.59 -0.16 -1.67 16 7 C -0.11 -0.92 5.46 -26.55 -0.14 -1.07 16 8 C -0.14 -1.34 2.60 -91.64 -0.24 -1.58 16 9 H 0.10 0.73 8.14 -51.92 -0.42 0.31 16 10 C 0.52 6.54 5.63 -10.99 -0.06 6.47 16 11 O -0.52 -8.42 12.90 -11.15 -0.14 -8.56 16 12 N -0.73 -8.69 5.43 -60.30 -0.33 -9.01 16 13 C 0.13 1.84 5.59 -4.04 -0.02 1.82 16 14 C -0.15 -2.35 4.12 -89.97 -0.37 -2.72 16 15 C 0.13 2.55 8.25 -8.51 -0.07 2.48 16 16 N -0.63 -15.43 3.70 -184.59 -0.68 -16.11 16 17 C -0.31 -8.87 11.08 -15.06 -0.17 -9.04 16 18 H 0.08 2.51 8.05 -52.48 -0.42 2.09 16 19 C -0.03 -0.77 5.50 -17.43 -0.10 -0.86 16 20 N -0.93 -29.65 13.70 55.49 0.76 -28.89 16 21 Si 1.07 26.71 25.13 -169.99 -4.27 22.44 16 22 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 23 H -0.29 -6.70 6.13 56.52 0.35 -6.35 16 24 H -0.29 -6.82 6.65 56.52 0.38 -6.45 16 25 C 0.11 2.15 5.28 -8.36 -0.04 2.11 16 26 H 0.10 1.31 5.32 -51.93 -0.28 1.03 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.90 7.39 -51.93 -0.38 0.51 16 33 H 0.07 0.58 7.51 -51.93 -0.39 0.19 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.40 3.95 7.88 -40.82 -0.32 3.62 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 1.06 7.80 -51.93 -0.41 0.65 16 38 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.04 0.75 8.10 -51.93 -0.42 0.33 16 41 H 0.26 8.17 8.73 -40.82 -0.36 7.81 16 42 H 0.05 0.93 7.46 -51.93 -0.39 0.55 16 43 H 0.05 1.01 4.65 -51.93 -0.24 0.77 16 LS Contribution 330.95 15.07 4.99 4.99 Total: -1.00 -34.66 330.95 -8.15 -42.81 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -7.13 Total: 0.87 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -0.85 Total: -3.53 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: -0.25 Total: -54.02 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -0.64 Total: -13.56 kcal Atomic # 14 Polarization: 26.71 SS G_CDS: -4.27 Total: 22.44 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.66 -8.15 -42.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031637555.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.172 kcal (2) G-P(sol) polarization free energy of solvation -34.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds