Wall clock time and date at job start Tue Mar 31 2020 06:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.48493 * 2 1 4 4 C 1.53093 * 109.48005 * 120.03883 * 2 1 3 5 5 C 1.53177 * 109.16207 * 177.59110 * 4 2 1 6 6 H 1.09010 * 109.61582 * 183.10657 * 5 4 2 7 7 C 1.50701 * 109.54715 * 62.88547 * 5 4 2 8 8 O 1.21284 * 119.99532 * 0.44613 * 7 5 4 9 9 N 1.34771 * 120.00386 * 180.44272 * 7 5 4 10 10 C 1.46500 * 120.00078 * 180.02562 * 9 7 5 11 11 C 1.53004 * 109.47021 * 179.97438 * 10 9 7 12 12 C 1.53935 * 113.74346 * 273.73967 * 11 10 9 13 13 N 1.47818 * 86.03797 * 222.08449 * 12 11 10 14 14 C 1.36933 * 134.45660 * 204.64341 * 13 12 11 15 15 H 1.07998 * 119.99552 * 173.34533 * 14 13 12 16 16 C 1.38806 * 120.00333 * 353.34707 * 14 13 12 17 17 N 1.31625 * 120.00040 * 5.06309 * 16 14 13 18 18 Si 1.86800 * 120.00266 * 185.06449 * 16 14 13 19 19 H 1.48500 * 109.47112 * 94.98629 * 18 16 14 20 20 H 1.48505 * 109.47236 * 214.98877 * 18 16 14 21 21 H 1.48499 * 109.46776 * 334.98520 * 18 16 14 22 22 C 1.47582 * 91.04913 * 24.54830 * 13 12 11 23 23 C 1.53175 * 109.03918 * 303.01385 * 5 4 2 24 24 C 1.53099 * 109.15758 * 56.98272 * 23 5 4 25 25 O 1.42898 * 109.41806 * 302.38984 * 24 23 5 26 26 H 1.09000 * 109.47306 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47335 * 300.02304 * 1 2 3 28 28 H 1.09007 * 109.47071 * 60.02202 * 1 2 3 29 29 H 1.09001 * 109.52585 * 57.68372 * 4 2 1 30 30 H 1.09005 * 109.51981 * 297.49538 * 4 2 1 31 31 H 0.97003 * 119.99472 * 359.97438 * 9 7 5 32 32 H 1.09002 * 109.47262 * 59.99841 * 10 9 7 33 33 H 1.09002 * 109.46750 * 299.99674 * 10 9 7 34 34 H 1.09003 * 112.94386 * 45.33122 * 11 10 9 35 35 H 1.09005 * 113.77027 * 336.34471 * 12 11 10 36 36 H 1.09003 * 113.77379 * 107.74840 * 12 11 10 37 37 H 0.97001 * 120.00290 * 179.97438 * 17 16 14 38 38 H 1.08993 * 113.77110 * 221.15254 * 22 13 12 39 39 H 1.09004 * 113.76801 * 89.75286 * 22 13 12 40 40 H 1.08997 * 109.52491 * 176.88474 * 23 5 4 41 41 H 1.09001 * 109.52453 * 297.08159 * 23 5 4 42 42 H 1.09001 * 109.48232 * 62.37688 * 24 23 5 43 43 H 1.09003 * 109.47829 * 182.40891 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7225 1.2494 5 6 3.5710 -0.7711 1.2120 6 1 3.9404 -1.3322 2.0705 7 6 4.1211 0.6314 1.2518 8 8 3.3651 1.5777 1.3131 9 7 5.4531 0.8340 1.2194 10 6 5.9879 2.1973 1.2587 11 6 7.5163 2.1472 1.2106 12 6 8.1747 1.9781 2.5918 13 7 9.1550 2.9853 2.1340 14 6 10.4485 3.2857 2.4682 15 1 10.9961 4.0221 1.8988 16 6 11.0558 2.6438 3.5386 17 7 10.4249 1.6764 4.1699 18 14 12.7686 3.1529 4.0833 19 1 12.6639 4.1370 5.1904 20 1 13.5146 1.9575 4.5523 21 1 13.4889 3.7687 2.9400 22 6 8.1810 3.5352 1.1712 23 6 4.0176 -1.4602 -0.0811 24 6 3.4306 -0.7092 -1.2791 25 8 2.0065 -0.6740 -1.1665 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5142 0.8897 28 1 -0.3633 0.5135 -0.8902 29 1 1.6442 -1.7377 1.2707 30 1 1.7147 -0.1846 2.1398 31 1 6.0577 0.0770 1.1708 32 1 5.6695 2.6861 2.1795 33 1 5.6152 2.7585 0.4018 34 1 7.8954 1.4575 0.4564 35 1 7.5516 2.3161 3.4199 36 1 8.6032 0.9894 2.7562 37 1 10.8494 1.2276 4.9177 38 1 8.6144 3.7874 0.2034 39 1 7.5598 4.3316 1.5810 40 1 5.1058 -1.4499 -0.1423 41 1 3.6612 -2.4903 -0.0867 42 1 3.8192 0.3091 -1.2958 43 1 3.7099 -1.2201 -2.2006 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032075333.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:42 Heat of formation + Delta-G solvation = -42.202443 kcal Electronic energy + Delta-G solvation = -22696.374979 eV Core-core repulsion = 19356.877735 eV Total energy + Delta-G solvation = -3339.497245 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.71704 -38.61563 -37.78376 -34.55307 -33.82266 -32.83088 -32.14130 -28.92352 -28.04008 -26.17826 -24.84968 -24.41390 -22.89769 -22.05009 -21.35443 -19.91754 -18.76259 -16.86903 -16.59782 -16.43345 -16.33202 -15.89255 -15.40874 -14.94505 -14.66441 -14.19854 -14.01909 -13.89752 -13.44951 -13.07888 -12.76201 -12.61129 -12.51572 -12.21906 -12.13961 -12.02992 -11.46052 -11.37184 -11.25437 -11.02103 -10.91348 -10.76079 -10.62859 -10.54438 -10.02821 -9.81336 -9.73930 -9.48214 -9.27994 -8.85384 -8.81285 -6.90250 -5.81983 -3.13094 2.66960 3.27577 3.36782 3.42145 3.43842 3.67224 4.40721 4.42574 4.53270 4.60257 4.76031 4.94431 5.07610 5.14327 5.24087 5.27813 5.32259 5.33316 5.42184 5.48741 5.55445 5.62253 5.63175 5.74688 5.77595 5.79681 5.85761 5.99361 6.02255 6.11580 6.21927 6.33191 6.52804 6.61595 6.71743 7.15622 7.17208 7.29765 7.51563 7.60998 7.93968 8.29453 9.00931 9.67134 10.56816 11.35845 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.041177 B = 0.003058 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.820718 B = 9154.569818 C = 9243.835125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.074 3.926 3 H 0.085 0.915 4 C -0.126 4.126 5 C -0.115 4.115 6 H 0.103 0.897 7 C 0.513 3.487 8 O -0.543 6.543 9 N -0.720 5.720 10 C 0.130 3.870 11 C -0.154 4.154 12 C 0.172 3.828 13 N -0.613 5.613 14 C -0.224 4.224 15 H 0.080 0.920 16 C -0.007 4.007 17 N -0.920 5.920 18 Si 0.910 3.090 19 H -0.289 1.289 20 H -0.290 1.290 21 H -0.280 1.280 22 C 0.128 3.872 23 C -0.147 4.147 24 C 0.060 3.940 25 O -0.384 6.384 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.401 0.599 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.089 0.911 35 H 0.029 0.971 36 H 0.067 0.933 37 H 0.254 0.746 38 H 0.045 0.955 39 H 0.036 0.964 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.050 0.950 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.230 -7.621 -8.601 19.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.017 3.983 3 H 0.103 0.897 4 C -0.164 4.164 5 C -0.136 4.136 6 H 0.121 0.879 7 C 0.299 3.701 8 O -0.422 6.422 9 N -0.370 5.370 10 C 0.006 3.994 11 C -0.174 4.174 12 C 0.047 3.953 13 N -0.339 5.339 14 C -0.352 4.352 15 H 0.098 0.902 16 C -0.204 4.204 17 N -0.567 5.567 18 Si 0.740 3.260 19 H -0.216 1.216 20 H -0.217 1.217 21 H -0.205 1.205 22 C 0.001 3.999 23 C -0.185 4.185 24 C -0.017 4.017 25 O -0.303 6.303 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.236 0.764 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.046 0.954 36 H 0.086 0.914 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.068 0.932 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -16.566 -7.028 -8.503 19.903 hybrid contribution 1.565 0.030 0.783 1.750 sum -15.001 -6.998 -7.721 18.265 Atomic orbital electron populations 1.21732 0.93421 1.02340 1.02378 1.22379 0.94808 0.97017 0.84138 0.89730 1.21989 0.92920 1.01656 0.99886 1.21445 0.97598 0.94199 1.00347 0.87934 1.20555 0.82476 0.91120 0.75971 1.90640 1.57628 1.44036 1.49847 1.46101 1.06645 1.10044 1.74241 1.21455 0.93946 0.82304 1.01737 1.23818 0.91122 1.00251 1.02180 1.22285 0.87774 0.95222 0.90067 1.45968 1.08200 1.36054 1.43669 1.19037 0.85991 1.19708 1.10454 0.90199 1.24821 0.98805 0.98909 0.97865 1.69829 1.37809 1.25044 1.24009 0.86128 0.83572 0.77603 0.78661 1.21603 1.21690 1.20538 1.22493 0.90356 0.92982 0.94041 1.22199 1.01623 1.00638 0.94029 1.22534 0.81509 0.99654 0.97974 1.87881 1.20525 1.78274 1.43615 0.92264 0.91102 0.92072 0.90698 0.90138 0.76425 0.91410 0.92034 0.89275 0.95354 0.91426 0.93645 0.93699 0.94672 0.90163 0.89867 0.93198 0.88683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.56 37.15 0.36 -0.98 16 2 C 0.07 0.85 2.97 -26.69 -0.08 0.77 16 3 H 0.08 1.18 5.82 -51.93 -0.30 0.88 16 4 C -0.13 -1.30 4.56 -26.59 -0.12 -1.42 16 5 C -0.11 -1.16 3.04 -91.59 -0.28 -1.44 16 6 H 0.10 0.89 8.14 -51.92 -0.42 0.47 16 7 C 0.51 6.79 5.82 -10.99 -0.06 6.73 16 8 O -0.54 -8.95 13.85 5.55 0.08 -8.87 16 9 N -0.72 -9.25 5.43 -60.29 -0.33 -9.58 16 10 C 0.13 1.95 5.51 -4.04 -0.02 1.92 16 11 C -0.15 -2.66 3.93 -89.70 -0.35 -3.01 16 12 C 0.17 3.88 6.99 -2.84 -0.02 3.86 16 13 N -0.61 -15.53 3.70 -177.71 -0.66 -16.18 16 14 C -0.22 -6.28 10.69 -15.06 -0.16 -6.44 16 15 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 16 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 17 N -0.92 -27.00 11.51 55.49 0.64 -26.37 16 18 Si 0.91 22.00 29.56 -169.99 -5.02 16.98 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 C 0.13 2.54 8.51 -2.96 -0.03 2.52 16 23 C -0.15 -1.26 5.57 -26.59 -0.15 -1.41 16 24 C 0.06 0.61 6.62 37.21 0.25 0.85 16 25 O -0.38 -4.61 10.41 -35.23 -0.37 -4.98 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.57 8.14 -51.92 -0.42 0.14 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.86 8.02 -51.93 -0.42 0.44 16 31 H 0.40 4.42 7.86 -40.82 -0.32 4.10 16 32 H 0.07 1.13 7.87 -51.93 -0.41 0.72 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 35 H 0.03 0.67 7.92 -51.93 -0.41 0.26 16 36 H 0.07 1.66 7.37 -51.93 -0.38 1.28 16 37 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 38 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.04 0.68 8.10 -51.93 -0.42 0.26 16 40 H 0.08 0.59 7.50 -51.93 -0.39 0.20 16 41 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.05 0.57 7.38 -51.93 -0.38 0.19 16 43 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 340.46 15.07 5.13 5.13 Total: -1.00 -32.54 340.46 -8.51 -41.04 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -7.21 Total: 1.18 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -0.77 Total: 1.65 kcal Atomic # 7 Polarization: -51.79 SS G_CDS: -0.35 Total: -52.13 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -0.29 Total: -13.84 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.54 -8.51 -41.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032075333.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.160 kcal (2) G-P(sol) polarization free energy of solvation -32.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds