Wall clock time and date at job start Tue Mar 31 2020 07:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.53616 * 2 1 4 4 C 1.55134 * 110.52371 * 237.22166 * 2 1 3 5 5 C 1.55002 * 102.09171 * 220.39904 * 4 2 1 6 6 O 1.44383 * 103.49146 * 37.10025 * 5 4 2 7 7 C 1.43741 * 106.97652 * 319.94780 * 6 5 4 8 8 H 1.09005 * 109.87651 * 266.93697 * 7 6 5 9 9 C 1.50701 * 109.88095 * 145.93636 * 7 6 5 10 10 O 1.21278 * 119.99761 * 340.86598 * 9 7 6 11 11 N 1.34775 * 119.99787 * 160.86902 * 9 7 6 12 12 C 1.46496 * 120.00638 * 4.52389 * 11 9 7 13 13 C 1.46512 * 119.99633 * 184.52076 * 11 9 7 14 14 H 1.09001 * 110.63749 * 356.86158 * 13 11 9 15 15 C 1.55150 * 110.71797 * 120.00063 * 13 11 9 16 16 C 1.54903 * 101.58225 * 153.86596 * 15 13 11 17 17 N 1.47428 * 104.92681 * 322.93494 * 16 15 13 18 18 C 1.36942 * 125.64497 * 204.15335 * 17 16 15 19 19 H 1.08008 * 119.99434 * 180.02562 * 18 17 16 20 20 C 1.38810 * 120.00173 * 0.02566 * 18 17 16 21 21 N 1.31613 * 120.00234 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99664 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47434 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47315 * 120.00291 * 22 20 18 25 25 H 1.48508 * 109.46974 * 239.99920 * 22 20 18 26 26 C 1.47280 * 108.55973 * 24.15650 * 17 16 15 27 27 H 1.08996 * 109.47482 * 293.54917 * 1 2 3 28 28 H 1.09008 * 109.47066 * 53.55042 * 1 2 3 29 29 H 1.09004 * 109.47286 * 173.54669 * 1 2 3 30 30 H 1.08991 * 110.83934 * 102.23216 * 4 2 1 31 31 H 1.08996 * 111.01043 * 338.63612 * 4 2 1 32 32 H 1.09001 * 110.61182 * 278.60474 * 5 4 2 33 33 H 1.08997 * 110.62001 * 155.60582 * 5 4 2 34 34 H 1.09002 * 109.47016 * 265.84546 * 12 11 9 35 35 H 1.09002 * 109.46815 * 25.83510 * 12 11 9 36 36 H 1.08999 * 109.47374 * 145.83852 * 12 11 9 37 37 H 1.09001 * 111.00555 * 35.79280 * 15 13 11 38 38 H 1.09006 * 111.00750 * 271.94291 * 15 13 11 39 39 H 1.09005 * 110.36848 * 81.82979 * 16 15 13 40 40 H 1.09005 * 110.36983 * 204.04475 * 16 15 13 41 41 H 0.96997 * 120.00091 * 180.02562 * 21 20 18 42 42 H 1.09005 * 109.85929 * 239.50614 * 26 17 16 43 43 H 1.08995 * 109.87670 * 118.35819 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0739 -0.7866 -1.2215 5 6 3.2687 -1.5580 -0.6052 6 8 2.7977 -1.9108 0.7133 7 6 2.0693 -0.7781 1.2158 8 1 2.7329 -0.1400 1.7995 9 6 0.9227 -1.2461 2.0745 10 8 0.5189 -2.3856 1.9784 11 7 0.3460 -0.3982 2.9491 12 6 0.7665 1.0044 2.9956 13 6 -0.7016 -0.8792 3.8534 14 1 -0.9323 -1.9253 3.6522 15 6 -0.2805 -0.6848 5.3339 16 6 -1.6565 -0.5813 6.0377 17 7 -2.5097 0.1654 5.0953 18 6 -3.6199 0.8942 5.4295 19 1 -4.1802 1.4072 4.6618 20 6 -4.0250 0.9737 6.7548 21 7 -3.3419 0.3490 7.6904 22 14 -5.5398 1.9673 7.2103 23 1 -6.1245 2.5685 5.9848 24 1 -6.5408 1.0777 7.8519 25 1 -5.1579 3.0463 8.1566 26 6 -1.9677 -0.0046 3.7365 27 1 -0.3634 0.4106 0.9420 28 1 -0.3633 0.6106 -0.8267 29 1 -0.3634 -1.0212 -0.1155 30 1 2.4120 -0.1052 -2.0022 31 1 1.3235 -1.4762 -1.6079 32 1 4.1472 -0.9161 -0.5398 33 1 3.4885 -2.4533 -1.1866 34 1 1.5334 1.1286 3.7602 35 1 1.1701 1.2949 2.0257 36 1 -0.0910 1.6330 3.2354 37 1 0.2928 0.2337 5.4597 38 1 0.2803 -1.5462 5.6970 39 1 -2.0673 -1.5751 6.2157 40 1 -1.5621 -0.0367 6.9772 41 1 -3.6252 0.4042 8.6164 42 1 -1.7091 0.9676 3.3167 43 1 -2.7035 -0.5003 3.1033 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033436581.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:17 Heat of formation + Delta-G solvation = -39.141132 kcal Electronic energy + Delta-G solvation = -23612.990115 eV Core-core repulsion = 20273.625619 eV Total energy + Delta-G solvation = -3339.364496 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.83521 -38.76940 -37.07390 -34.97602 -33.65951 -32.15034 -30.30879 -29.14802 -27.67263 -27.05861 -26.31649 -24.49809 -23.10666 -21.60880 -20.21391 -19.98586 -18.66458 -17.48633 -17.03382 -16.60176 -16.39580 -15.23944 -15.22562 -14.71151 -14.58622 -14.11242 -14.00609 -13.52692 -13.23450 -13.05010 -12.72313 -12.52566 -12.29163 -12.17647 -11.80811 -11.63069 -11.53041 -11.36260 -11.23224 -11.07120 -11.01744 -10.84229 -10.82997 -10.43999 -10.13627 -10.09060 -9.81573 -9.56776 -9.28824 -8.67943 -8.32129 -6.86220 -5.67074 -3.09692 2.65593 2.97102 3.38538 3.44078 3.46609 3.84742 4.14717 4.38682 4.47600 4.49033 4.73300 4.91068 5.03338 5.11035 5.20197 5.34000 5.37396 5.39422 5.42839 5.48313 5.53373 5.59958 5.67609 5.72041 5.72288 5.76756 5.85186 5.92056 6.13337 6.26964 6.33994 6.54057 6.56281 6.58611 6.70883 7.01114 7.49213 7.58492 7.61401 7.83237 8.31742 8.36072 9.19223 9.79748 10.44411 11.36488 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.038763 B = 0.003902 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.166222 B = 7174.554974 C = 7510.818394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.113 4.113 3 H 0.092 0.908 4 C -0.149 4.149 5 C 0.044 3.956 6 O -0.349 6.349 7 C 0.062 3.938 8 H 0.089 0.911 9 C 0.521 3.479 10 O -0.526 6.526 11 N -0.601 5.601 12 C 0.067 3.933 13 C 0.127 3.873 14 H 0.103 0.897 15 C -0.152 4.152 16 C 0.153 3.847 17 N -0.602 5.602 18 C -0.222 4.222 19 H 0.078 0.922 20 C -0.010 4.010 21 N -0.921 5.921 22 Si 0.915 3.085 23 H -0.280 1.280 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.129 3.871 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.096 0.904 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.014 0.986 40 H 0.110 0.890 41 H 0.252 0.748 42 H 0.030 0.970 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.522 2.078 -15.364 20.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.132 4.132 3 H 0.111 0.889 4 C -0.187 4.187 5 C -0.032 4.032 6 O -0.267 6.267 7 C 0.001 3.999 8 H 0.107 0.893 9 C 0.308 3.692 10 O -0.401 6.401 11 N -0.335 5.335 12 C -0.076 4.076 13 C 0.024 3.976 14 H 0.121 0.879 15 C -0.191 4.191 16 C 0.028 3.972 17 N -0.329 5.329 18 C -0.350 4.350 19 H 0.096 0.904 20 C -0.206 4.206 21 N -0.570 5.570 22 Si 0.746 3.254 23 H -0.205 1.205 24 H -0.217 1.217 25 H -0.217 1.217 26 C 0.002 3.998 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.114 0.886 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.032 0.968 40 H 0.127 0.873 41 H 0.063 0.937 42 H 0.047 0.953 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 13.205 1.317 -15.126 20.122 hybrid contribution -0.750 0.763 0.157 1.081 sum 12.455 2.080 -14.969 19.584 Atomic orbital electron populations 1.22143 0.93178 1.03306 1.03373 1.22527 0.97860 0.99582 0.93198 0.88943 1.23308 0.98485 0.99425 0.97490 1.23609 0.95968 0.99987 0.83650 1.88994 1.70492 1.36108 1.31121 1.22807 0.92955 0.88579 0.95591 0.89318 1.20197 0.83480 0.85618 0.79933 1.90691 1.63322 1.18965 1.67171 1.47821 1.38691 1.09955 1.37026 1.21924 1.01659 0.82387 1.01620 1.22236 0.86811 0.99501 0.89016 0.87923 1.23368 1.00783 1.00672 0.94285 1.21942 0.84283 0.95584 0.95438 1.44502 1.30060 1.57987 1.00351 1.19110 1.01112 1.22383 0.92434 0.90417 1.24791 0.99492 1.00627 0.95683 1.69794 1.40091 1.46867 1.00211 0.85993 0.82133 0.79240 0.78082 1.20538 1.21720 1.21736 1.21572 0.92469 0.96247 0.89505 0.90791 0.91825 0.91607 0.89901 0.89950 0.91956 0.88628 0.92391 0.91320 0.89612 0.91768 0.92100 0.96751 0.87271 0.93722 0.95266 0.95691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 7.89 37.16 0.29 -1.51 16 2 C -0.11 -1.07 2.66 -88.92 -0.24 -1.31 16 3 H 0.09 0.65 7.84 -51.93 -0.41 0.24 16 4 C -0.15 -1.24 6.71 -24.54 -0.16 -1.40 16 5 C 0.04 0.40 7.72 38.22 0.29 0.70 16 6 O -0.35 -4.87 10.81 -54.01 -0.58 -5.45 16 7 C 0.06 0.77 2.93 -27.31 -0.08 0.69 16 8 H 0.09 0.92 7.36 -51.93 -0.38 0.54 16 9 C 0.52 8.43 4.91 -10.99 -0.05 8.38 16 10 O -0.53 -10.75 15.92 -13.21 -0.21 -10.96 16 11 N -0.60 -9.29 2.18 -171.83 -0.37 -9.67 16 12 C 0.07 0.80 7.82 59.84 0.47 1.27 16 13 C 0.13 2.40 3.36 -66.09 -0.22 2.18 16 14 H 0.10 2.13 7.00 -51.93 -0.36 1.77 16 15 C -0.15 -2.95 6.66 -24.59 -0.16 -3.12 16 16 C 0.15 3.73 5.89 -2.53 -0.01 3.71 16 17 N -0.60 -15.35 3.40 -169.86 -0.58 -15.93 16 18 C -0.22 -6.13 10.28 -15.06 -0.15 -6.29 16 19 H 0.08 2.08 7.83 -52.48 -0.41 1.66 16 20 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 21 N -0.92 -26.66 10.09 55.49 0.56 -26.10 16 22 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 C 0.13 2.71 6.84 -2.92 -0.02 2.69 16 27 H 0.07 0.91 5.00 -51.93 -0.26 0.65 16 28 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 29 H 0.06 0.88 7.62 -51.93 -0.40 0.49 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.76 7.80 -51.93 -0.41 0.35 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.64 7.93 -51.93 -0.41 0.23 16 35 H 0.07 0.62 4.96 -51.93 -0.26 0.36 16 36 H 0.09 1.12 6.05 -51.93 -0.31 0.81 16 37 H 0.06 1.18 7.19 -51.93 -0.37 0.81 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.11 2.96 5.87 -51.93 -0.30 2.65 16 41 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.03 0.58 5.89 -51.93 -0.31 0.27 16 43 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 326.08 15.07 4.91 4.91 Total: -1.00 -32.97 326.08 -8.13 -41.11 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -6.69 Total: -0.36 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: -0.15 Total: 5.60 kcal Atomic # 7 Polarization: -51.31 SS G_CDS: -0.39 Total: -51.70 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -0.79 Total: -16.41 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.97 -8.13 -41.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033436581.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.965 kcal (2) G-P(sol) polarization free energy of solvation -32.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds