Wall clock time and date at job start Tue Mar 31 2020 07:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.53616 * 2 1 4 4 C 1.55134 * 110.52371 * 237.22166 * 2 1 3 5 5 C 1.55002 * 102.09171 * 220.39904 * 4 2 1 6 6 O 1.44383 * 103.49146 * 37.10025 * 5 4 2 7 7 C 1.43741 * 106.97652 * 319.94780 * 6 5 4 8 8 H 1.09005 * 109.87651 * 266.93697 * 7 6 5 9 9 C 1.50701 * 109.88095 * 145.93636 * 7 6 5 10 10 O 1.21278 * 119.99761 * 340.86598 * 9 7 6 11 11 N 1.34775 * 119.99787 * 160.86902 * 9 7 6 12 12 C 1.46496 * 120.00638 * 4.52389 * 11 9 7 13 13 C 1.46512 * 119.99633 * 184.52076 * 11 9 7 14 14 H 1.09001 * 110.63749 * 356.86158 * 13 11 9 15 15 C 1.55150 * 110.71797 * 120.00063 * 13 11 9 16 16 C 1.54903 * 101.58225 * 153.86596 * 15 13 11 17 17 N 1.47428 * 104.92681 * 322.93494 * 16 15 13 18 18 C 1.36942 * 125.64497 * 204.15335 * 17 16 15 19 19 H 1.08008 * 119.99434 * 180.02562 * 18 17 16 20 20 C 1.38810 * 120.00173 * 0.02566 * 18 17 16 21 21 N 1.31613 * 120.00234 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99664 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47434 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47315 * 120.00291 * 22 20 18 25 25 H 1.48508 * 109.46974 * 239.99920 * 22 20 18 26 26 C 1.47280 * 108.55973 * 24.15650 * 17 16 15 27 27 H 1.08996 * 109.47482 * 293.54917 * 1 2 3 28 28 H 1.09008 * 109.47066 * 53.55042 * 1 2 3 29 29 H 1.09004 * 109.47286 * 173.54669 * 1 2 3 30 30 H 1.08991 * 110.83934 * 102.23216 * 4 2 1 31 31 H 1.08996 * 111.01043 * 338.63612 * 4 2 1 32 32 H 1.09001 * 110.61182 * 278.60474 * 5 4 2 33 33 H 1.08997 * 110.62001 * 155.60582 * 5 4 2 34 34 H 1.09002 * 109.47016 * 265.84546 * 12 11 9 35 35 H 1.09002 * 109.46815 * 25.83510 * 12 11 9 36 36 H 1.08999 * 109.47374 * 145.83852 * 12 11 9 37 37 H 1.09001 * 111.00555 * 35.79280 * 15 13 11 38 38 H 1.09006 * 111.00750 * 271.94291 * 15 13 11 39 39 H 1.09005 * 110.36848 * 81.82979 * 16 15 13 40 40 H 1.09005 * 110.36983 * 204.04475 * 16 15 13 41 41 H 0.96997 * 120.00091 * 180.02562 * 21 20 18 42 42 H 1.09005 * 109.85929 * 239.50614 * 26 17 16 43 43 H 1.08995 * 109.87670 * 118.35819 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0739 -0.7866 -1.2215 5 6 3.2687 -1.5580 -0.6052 6 8 2.7977 -1.9108 0.7133 7 6 2.0693 -0.7781 1.2158 8 1 2.7329 -0.1400 1.7995 9 6 0.9227 -1.2461 2.0745 10 8 0.5189 -2.3856 1.9784 11 7 0.3460 -0.3982 2.9491 12 6 0.7665 1.0044 2.9956 13 6 -0.7016 -0.8792 3.8534 14 1 -0.9323 -1.9253 3.6522 15 6 -0.2805 -0.6848 5.3339 16 6 -1.6565 -0.5813 6.0377 17 7 -2.5097 0.1654 5.0953 18 6 -3.6199 0.8942 5.4295 19 1 -4.1802 1.4072 4.6618 20 6 -4.0250 0.9737 6.7548 21 7 -3.3419 0.3490 7.6904 22 14 -5.5398 1.9673 7.2103 23 1 -6.1245 2.5685 5.9848 24 1 -6.5408 1.0777 7.8519 25 1 -5.1579 3.0463 8.1566 26 6 -1.9677 -0.0046 3.7365 27 1 -0.3634 0.4106 0.9420 28 1 -0.3633 0.6106 -0.8267 29 1 -0.3634 -1.0212 -0.1155 30 1 2.4120 -0.1052 -2.0022 31 1 1.3235 -1.4762 -1.6079 32 1 4.1472 -0.9161 -0.5398 33 1 3.4885 -2.4533 -1.1866 34 1 1.5334 1.1286 3.7602 35 1 1.1701 1.2949 2.0257 36 1 -0.0910 1.6330 3.2354 37 1 0.2928 0.2337 5.4597 38 1 0.2803 -1.5462 5.6970 39 1 -2.0673 -1.5751 6.2157 40 1 -1.5621 -0.0367 6.9772 41 1 -3.6252 0.4042 8.6164 42 1 -1.7091 0.9676 3.3167 43 1 -2.7035 -0.5003 3.1033 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033436581.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:16 Heat of formation + Delta-G solvation = -60.327855 kcal Electronic energy + Delta-G solvation = -23613.908840 eV Core-core repulsion = 20273.625619 eV Total energy + Delta-G solvation = -3340.283222 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.92037 -39.97070 -38.63186 -36.41226 -34.72614 -33.89947 -31.48487 -30.74163 -29.18034 -28.09066 -27.56905 -26.32866 -24.04036 -22.55292 -22.14536 -21.25148 -19.94449 -18.98266 -18.54079 -17.68072 -17.48623 -16.83051 -16.33054 -16.21488 -15.92433 -15.46524 -15.07801 -14.92346 -14.51003 -14.25398 -14.01519 -13.78545 -13.62491 -13.44832 -13.31768 -13.06651 -12.96965 -12.72830 -12.42653 -12.33749 -12.25672 -12.14042 -11.98075 -11.97406 -11.82250 -11.73867 -11.41135 -11.06616 -10.77582 -10.44067 -9.65890 -8.92791 -7.78205 -5.24334 1.47052 1.47941 1.49406 1.59432 1.76834 2.49809 2.99552 3.32138 3.32789 3.45407 3.69673 3.74135 3.86538 3.91021 4.02117 4.19590 4.21069 4.24616 4.31885 4.45391 4.54919 4.59681 4.62952 4.64643 4.70336 4.80123 4.84134 4.92840 4.95519 4.99893 5.04402 5.06624 5.14994 5.27820 5.44822 5.52246 5.55517 5.75702 5.83049 6.27065 6.38130 7.07815 7.10972 7.73663 8.38133 9.23805 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.038763 B = 0.003902 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.166222 B = 7174.554974 C = 7510.818394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.108 4.108 3 H 0.134 0.866 4 C -0.145 4.145 5 C 0.038 3.962 6 O -0.389 6.389 7 C 0.064 3.936 8 H 0.119 0.881 9 C 0.515 3.485 10 O -0.580 6.580 11 N -0.597 5.597 12 C 0.061 3.939 13 C 0.141 3.859 14 H 0.077 0.923 15 C -0.132 4.132 16 C 0.156 3.844 17 N -0.621 5.621 18 C -0.239 4.239 19 H 0.083 0.917 20 C -0.065 4.065 21 N -0.949 5.949 22 Si 0.983 3.017 23 H -0.266 1.266 24 H -0.295 1.295 25 H -0.288 1.288 26 C 0.132 3.868 27 H 0.060 0.940 28 H 0.085 0.915 29 H 0.030 0.970 30 H 0.117 0.883 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.075 0.925 35 H 0.105 0.895 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.071 0.929 39 H -0.018 1.018 40 H 0.083 0.917 41 H 0.248 0.752 42 H 0.052 0.948 43 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.275 4.562 -17.272 23.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.126 4.126 3 H 0.152 0.848 4 C -0.182 4.182 5 C -0.038 4.038 6 O -0.308 6.308 7 C 0.003 3.997 8 H 0.136 0.864 9 C 0.305 3.695 10 O -0.460 6.460 11 N -0.330 5.330 12 C -0.080 4.080 13 C 0.037 3.963 14 H 0.095 0.905 15 C -0.171 4.171 16 C 0.031 3.969 17 N -0.348 5.348 18 C -0.367 4.367 19 H 0.101 0.899 20 C -0.257 4.257 21 N -0.598 5.598 22 Si 0.811 3.189 23 H -0.190 1.190 24 H -0.223 1.223 25 H -0.215 1.215 26 C 0.006 3.994 27 H 0.079 0.921 28 H 0.104 0.896 29 H 0.049 0.951 30 H 0.136 0.864 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.118 0.882 34 H 0.093 0.907 35 H 0.123 0.877 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.000 1.000 40 H 0.101 0.899 41 H 0.058 0.942 42 H 0.069 0.931 43 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges 14.987 3.834 -17.074 23.040 hybrid contribution -1.298 -0.061 0.694 1.473 sum 13.689 3.774 -16.380 21.678 Atomic orbital electron populations 1.22106 0.94803 1.01385 1.03519 1.22655 0.96344 1.01409 0.92241 0.84784 1.23314 0.97641 0.99496 0.97776 1.23903 0.97089 1.01045 0.81755 1.88959 1.70846 1.37565 1.33466 1.22976 0.91728 0.88660 0.96334 0.86355 1.21093 0.83965 0.84820 0.79641 1.90662 1.65083 1.21451 1.68771 1.47807 1.37536 1.11573 1.36053 1.22201 1.01740 0.79627 1.04418 1.21745 0.87195 0.97885 0.89511 0.90472 1.23155 0.98060 1.02027 0.93894 1.21707 0.86785 0.93266 0.95137 1.44762 1.30061 1.57745 1.02245 1.19485 1.01938 1.22477 0.92829 0.89904 1.25645 1.02473 1.01939 0.95668 1.70032 1.41494 1.48134 1.00190 0.84948 0.78429 0.77552 0.77985 1.19013 1.22257 1.21455 1.21640 0.92931 0.97515 0.87351 0.92100 0.89624 0.95115 0.86432 0.91792 0.89114 0.88190 0.90692 0.87667 0.90636 0.89945 0.90999 0.99991 0.89923 0.94221 0.93068 0.96962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.25 7.89 71.98 0.57 -2.68 16 2 C -0.11 -1.63 2.66 -9.69 -0.03 -1.66 16 3 H 0.13 1.01 7.84 -2.39 -0.02 0.99 16 4 C -0.14 -1.91 6.71 32.01 0.21 -1.69 16 5 C 0.04 0.57 7.72 72.67 0.56 1.13 16 6 O -0.39 -10.22 10.81 -131.03 -1.42 -11.63 16 7 C 0.06 1.41 2.93 30.22 0.09 1.50 16 8 H 0.12 1.91 7.36 -2.38 -0.02 1.89 16 9 C 0.52 16.33 4.91 87.66 0.43 16.76 16 10 O -0.58 -24.51 15.92 14.93 0.24 -24.27 16 11 N -0.60 -17.72 2.18 -815.95 -1.78 -19.50 16 12 C 0.06 1.26 7.82 127.77 1.00 2.26 16 13 C 0.14 5.39 3.36 46.18 0.16 5.54 16 14 H 0.08 3.36 7.00 -2.39 -0.02 3.34 16 15 C -0.13 -5.14 6.66 31.98 0.21 -4.93 16 16 C 0.16 7.91 5.89 86.85 0.51 8.43 16 17 N -0.62 -32.34 3.40 -691.31 -2.35 -34.69 16 18 C -0.24 -13.33 10.28 84.03 0.86 -12.46 16 19 H 0.08 4.42 7.83 -2.91 -0.02 4.39 16 20 C -0.06 -3.65 5.49 84.86 0.47 -3.18 16 21 N -0.95 -56.42 10.09 21.65 0.22 -56.20 16 22 Si 0.98 45.27 29.55 68.60 2.03 47.30 16 23 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 24 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 25 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 26 C 0.13 5.58 6.84 86.68 0.59 6.17 16 27 H 0.06 1.38 5.00 -2.39 -0.01 1.36 16 28 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 29 H 0.03 0.82 7.62 -2.38 -0.02 0.80 16 30 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 1.08 7.80 -2.39 -0.02 1.06 16 32 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.07 1.34 7.93 -2.39 -0.02 1.32 16 35 H 0.11 1.39 4.96 -2.39 -0.01 1.38 16 36 H 0.08 1.76 6.05 -2.39 -0.01 1.74 16 37 H 0.08 2.92 7.19 -2.39 -0.02 2.90 16 38 H 0.07 2.64 8.14 -2.38 -0.02 2.62 16 39 H -0.02 -1.00 8.14 -2.38 -0.02 -1.02 16 40 H 0.08 4.65 5.87 -2.38 -0.01 4.64 16 41 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 42 H 0.05 1.97 5.89 -2.38 -0.01 1.95 16 43 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -75.91 326.08 3.58 -72.33 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: 1.00 Total: 11.47 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: 5.64 Total: 15.19 kcal Atomic # 7 Polarization: -106.48 SS G_CDS: -3.91 Total: -110.39 kcal Atomic # 8 Polarization: -34.73 SS G_CDS: -1.18 Total: -35.90 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -75.91 3.58 -72.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033436581.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.005 kcal (2) G-P(sol) polarization free energy of solvation -75.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds