Wall clock time and date at job start Tue Mar 31 2020 06:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 110.55010 * 2 1 4 4 C 1.54996 * 110.62150 * 237.11764 * 2 1 3 5 5 C 1.54812 * 102.09034 * 204.47425 * 4 2 1 6 6 C 1.54093 * 104.19129 * 20.88015 * 5 4 2 7 7 H 1.09002 * 109.87835 * 242.46047 * 6 5 4 8 8 C 1.50698 * 109.88208 * 121.45687 * 6 5 4 9 9 O 1.21284 * 119.99534 * 245.30733 * 8 6 5 10 10 N 1.34770 * 120.00232 * 65.30122 * 8 6 5 11 11 C 1.46505 * 119.99917 * 0.02562 * 10 8 6 12 12 C 1.46503 * 120.00345 * 180.02562 * 10 8 6 13 13 H 1.08998 * 110.63626 * 358.31724 * 12 10 8 14 14 C 1.55148 * 110.87374 * 235.06843 * 12 10 8 15 15 C 1.55133 * 101.48378 * 205.89678 * 14 12 10 16 16 N 1.47426 * 104.72214 * 37.29794 * 15 14 12 17 17 C 1.36939 * 125.64656 * 155.82094 * 16 15 14 18 18 H 1.07999 * 119.99517 * 199.40367 * 17 16 15 19 19 C 1.38809 * 120.00347 * 19.40725 * 17 16 15 20 20 N 1.31623 * 119.99893 * 28.44314 * 19 17 16 21 21 Si 1.86793 * 119.99903 * 208.45078 * 19 17 16 22 22 H 1.48503 * 109.47100 * 179.97438 * 21 19 17 23 23 H 1.48503 * 109.47335 * 299.99887 * 21 19 17 24 24 H 1.48502 * 109.47227 * 59.99961 * 21 19 17 25 25 C 1.47022 * 108.69976 * 335.54833 * 16 15 14 26 26 O 1.43744 * 107.42332 * 1.95055 * 6 5 4 27 27 H 1.09009 * 109.46759 * 182.88735 * 1 2 3 28 28 H 1.09002 * 109.47419 * 302.88208 * 1 2 3 29 29 H 1.08994 * 109.47403 * 62.88713 * 1 2 3 30 30 H 1.09001 * 110.90459 * 86.27628 * 4 2 1 31 31 H 1.09001 * 110.90307 * 322.66936 * 4 2 1 32 32 H 1.09001 * 110.48564 * 262.20351 * 5 4 2 33 33 H 1.09003 * 110.59830 * 139.61571 * 5 4 2 34 34 H 1.09003 * 109.46788 * 269.99854 * 11 10 8 35 35 H 1.08991 * 109.47177 * 29.99258 * 11 10 8 36 36 H 1.09001 * 109.47125 * 150.00028 * 11 10 8 37 37 H 1.09003 * 111.00636 * 324.13157 * 14 12 10 38 38 H 1.08995 * 111.00855 * 87.99089 * 14 12 10 39 39 H 1.09003 * 110.49732 * 278.44913 * 15 14 12 40 40 H 1.09002 * 110.34263 * 156.06155 * 15 14 12 41 41 H 0.96998 * 120.00170 * 5.66170 * 20 19 17 42 42 H 1.09002 * 109.87831 * 120.70897 * 25 16 15 43 43 H 1.09001 * 109.88102 * 241.86904 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0207 0.0000 4 6 2.0758 -0.7876 -1.2182 5 6 3.4795 -1.2156 -0.7251 6 6 3.3840 -1.1265 0.8103 7 1 4.0872 -0.3816 1.1828 8 6 3.6890 -2.4697 1.4216 9 8 2.8256 -3.0719 2.0238 10 7 4.9211 -3.0018 1.2989 11 6 5.9642 -2.2741 0.5717 12 6 5.2175 -4.3079 1.8927 13 1 4.3463 -4.6969 2.4196 14 6 6.4397 -4.2180 2.8441 15 6 6.9735 -5.6739 2.7996 16 7 6.7760 -6.1028 1.4030 17 6 7.4810 -7.0870 0.7630 18 1 7.4961 -7.1257 -0.3161 19 6 8.1761 -8.0349 1.5014 20 7 7.7599 -8.3661 2.7053 21 14 9.7023 -8.8403 0.7863 22 1 10.2562 -9.8087 1.7664 23 1 9.3451 -9.5529 -0.4666 24 1 10.7192 -7.7992 0.4910 25 6 5.6922 -5.3033 0.8132 26 8 2.0397 -0.7351 1.1359 27 1 -0.3633 -1.0265 0.0518 28 1 -0.3634 0.5579 0.8630 29 1 -0.3634 0.4683 -0.9147 30 1 2.1509 -0.1445 -2.0951 31 1 1.4550 -1.6586 -1.4281 32 1 4.2407 -0.5314 -1.1003 33 1 3.6999 -2.2371 -1.0351 34 1 5.9367 -2.5552 -0.4811 35 1 5.7922 -1.2019 0.6659 36 1 6.9397 -2.5237 0.9890 37 1 7.1805 -3.5149 2.4633 38 1 6.1299 -3.9481 3.8537 39 1 6.4033 -6.3104 3.4763 40 1 8.0323 -5.6973 3.0574 41 1 6.9236 -8.0103 3.0443 42 1 6.0635 -4.7592 -0.0553 43 1 4.8682 -5.9542 0.5209 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033437582.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:27 Heat of formation + Delta-G solvation = -51.497231 kcal Electronic energy + Delta-G solvation = -23178.385068 eV Core-core repulsion = 19838.484771 eV Total energy + Delta-G solvation = -3339.900297 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.63440 -38.95353 -37.30722 -35.02729 -32.65568 -32.52454 -31.58549 -29.19678 -28.06240 -27.06499 -26.19378 -24.21784 -22.68484 -21.50140 -20.65696 -20.30680 -18.89156 -17.53518 -17.48913 -16.76167 -16.44006 -15.64964 -14.97729 -14.59569 -14.29657 -14.09199 -13.92929 -13.64489 -13.29710 -13.18558 -12.97206 -12.72390 -12.54629 -12.35826 -12.16850 -11.99846 -11.70766 -11.58057 -11.20280 -11.11983 -11.05048 -10.75055 -10.70327 -10.55650 -10.23640 -10.07350 -10.02073 -9.54905 -9.37912 -8.48499 -8.38149 -6.94199 -6.11200 -3.17713 2.63952 2.80913 3.49296 3.52712 3.68000 3.71248 4.17790 4.34781 4.50639 4.57569 4.59622 4.82297 4.96016 5.07316 5.10768 5.20305 5.20361 5.25531 5.35514 5.38620 5.43320 5.48011 5.56373 5.58461 5.61543 5.68012 5.77647 5.80424 5.89840 5.98625 6.12005 6.34543 6.44215 6.57558 6.60998 6.87816 6.91959 7.01956 7.49302 7.79869 8.26251 8.47913 9.00678 9.79922 10.35674 11.20867 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.038957 B = 0.003551 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.575294 B = 7883.833088 C = 8098.322234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.068 3.932 3 H 0.072 0.928 4 C -0.149 4.149 5 C -0.146 4.146 6 C 0.064 3.936 7 H 0.093 0.907 8 C 0.512 3.488 9 O -0.523 6.523 10 N -0.600 5.600 11 C 0.073 3.927 12 C 0.127 3.873 13 H 0.104 0.896 14 C -0.144 4.144 15 C 0.146 3.854 16 N -0.600 5.600 17 C -0.339 4.339 18 H 0.063 0.937 19 C -0.024 4.024 20 N -0.913 5.913 21 Si 1.066 2.934 22 H -0.285 1.285 23 H -0.293 1.293 24 H -0.294 1.294 25 C 0.129 3.871 26 O -0.345 6.345 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.030 0.970 40 H 0.053 0.947 41 H 0.269 0.731 42 H 0.029 0.971 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.858 19.771 -7.205 22.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.011 3.989 3 H 0.090 0.910 4 C -0.187 4.187 5 C -0.184 4.184 6 C 0.003 3.997 7 H 0.110 0.890 8 C 0.298 3.702 9 O -0.398 6.398 10 N -0.334 5.334 11 C -0.070 4.070 12 C 0.024 3.976 13 H 0.122 0.878 14 C -0.183 4.183 15 C 0.020 3.980 16 N -0.327 5.327 17 C -0.467 4.467 18 H 0.081 0.919 19 C -0.227 4.227 20 N -0.553 5.553 21 Si 0.895 3.105 22 H -0.211 1.211 23 H -0.220 1.220 24 H -0.221 1.221 25 C 0.003 3.997 26 O -0.264 6.264 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.047 0.953 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.047 0.953 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -7.158 18.263 -6.414 20.638 hybrid contribution -1.054 1.102 -0.631 1.650 sum -8.212 19.365 -7.044 22.182 Atomic orbital electron populations 1.21766 0.92892 1.03383 1.02318 1.23240 0.95598 0.95156 0.84923 0.91004 1.23197 0.95915 1.01092 0.98493 1.22962 0.98574 1.03910 0.92994 1.22577 0.87021 0.94713 0.95417 0.88996 1.20414 0.82140 0.87132 0.80507 1.90707 1.45671 1.62106 1.41332 1.47771 1.10493 1.20276 1.54859 1.21880 0.92569 0.95675 0.96889 1.22206 0.98838 0.81725 0.94801 0.87757 1.23225 0.96903 0.99722 0.98497 1.21561 0.99173 0.89670 0.87630 1.44510 1.37442 1.40939 1.09838 1.19700 1.28332 1.06896 0.91765 0.91873 1.25806 1.04224 0.95360 0.97261 1.70779 1.23531 1.40910 1.20080 0.83513 0.76114 0.75883 0.74957 1.21058 1.21987 1.22090 1.21563 0.91406 0.92435 0.94343 1.89070 1.26153 1.73086 1.38044 0.91465 0.91771 0.91056 0.89793 0.90079 0.89500 0.89659 0.92234 0.91477 0.90025 0.91153 0.91524 0.95273 0.92862 0.91949 0.95293 0.95663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.66 37.16 0.36 -0.85 16 2 C 0.07 0.64 3.97 -25.68 -0.10 0.54 16 3 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 4 C -0.15 -1.24 6.59 -24.72 -0.16 -1.40 16 5 C -0.15 -1.33 5.24 -25.21 -0.13 -1.47 16 6 C 0.06 0.77 2.97 -27.31 -0.08 0.69 16 7 H 0.09 0.90 7.18 -51.93 -0.37 0.52 16 8 C 0.51 8.26 6.87 -10.99 -0.08 8.19 16 9 O -0.52 -10.84 15.90 -14.02 -0.22 -11.06 16 10 N -0.60 -9.14 2.89 -171.84 -0.50 -9.64 16 11 C 0.07 0.82 8.10 59.85 0.48 1.31 16 12 C 0.13 2.38 3.35 -66.10 -0.22 2.16 16 13 H 0.10 2.16 6.99 -51.93 -0.36 1.80 16 14 C -0.14 -2.64 6.63 -24.47 -0.16 -2.80 16 15 C 0.15 3.40 5.39 -2.41 -0.01 3.39 16 16 N -0.60 -15.36 3.26 -169.93 -0.55 -15.91 16 17 C -0.34 -9.64 10.00 -15.06 -0.15 -9.79 16 18 H 0.06 1.79 7.97 -52.49 -0.42 1.37 16 19 C -0.02 -0.69 5.10 -17.43 -0.09 -0.78 16 20 N -0.91 -27.80 13.01 55.49 0.72 -27.08 16 21 Si 1.07 25.30 30.00 -169.99 -5.10 20.20 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 C 0.13 2.79 6.88 -3.07 -0.02 2.77 16 26 O -0.35 -4.77 10.46 -54.80 -0.57 -5.34 16 27 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.75 8.06 -51.93 -0.42 0.33 16 32 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.89 7.33 -51.93 -0.38 0.51 16 34 H 0.06 0.63 7.60 -51.93 -0.39 0.23 16 35 H 0.07 0.55 6.19 -51.93 -0.32 0.23 16 36 H 0.08 0.98 6.09 -51.93 -0.32 0.66 16 37 H 0.07 1.18 6.11 -51.93 -0.32 0.86 16 38 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.03 0.74 6.81 -51.93 -0.35 0.38 16 40 H 0.05 1.33 8.08 -51.93 -0.42 0.91 16 41 H 0.27 8.27 6.19 -40.82 -0.25 8.02 16 42 H 0.03 0.60 6.94 -51.93 -0.36 0.24 16 43 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 334.25 15.07 5.04 5.04 Total: -1.00 -34.86 334.25 -8.42 -43.28 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -6.87 Total: -1.44 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -0.37 Total: 1.95 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: -0.33 Total: -52.63 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: -0.80 Total: -16.40 kcal Atomic # 14 Polarization: 25.30 SS G_CDS: -5.10 Total: 20.20 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.86 -8.42 -43.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033437582.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.218 kcal (2) G-P(sol) polarization free energy of solvation -34.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds