Wall clock time and date at job start Tue Mar 31 2020 06:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 110.55010 * 2 1 4 4 C 1.54996 * 110.62150 * 237.11764 * 2 1 3 5 5 C 1.54812 * 102.09034 * 204.47425 * 4 2 1 6 6 C 1.54093 * 104.19129 * 20.88015 * 5 4 2 7 7 H 1.09002 * 109.87835 * 242.46047 * 6 5 4 8 8 C 1.50698 * 109.88208 * 121.45687 * 6 5 4 9 9 O 1.21284 * 119.99534 * 245.30733 * 8 6 5 10 10 N 1.34770 * 120.00232 * 65.30122 * 8 6 5 11 11 C 1.46505 * 119.99917 * 0.02562 * 10 8 6 12 12 C 1.46503 * 120.00345 * 180.02562 * 10 8 6 13 13 H 1.08998 * 110.63626 * 358.31724 * 12 10 8 14 14 C 1.55148 * 110.87374 * 235.06843 * 12 10 8 15 15 C 1.55133 * 101.48378 * 205.89678 * 14 12 10 16 16 N 1.47426 * 104.72214 * 37.29794 * 15 14 12 17 17 C 1.36939 * 125.64656 * 155.82094 * 16 15 14 18 18 H 1.07999 * 119.99517 * 199.40367 * 17 16 15 19 19 C 1.38809 * 120.00347 * 19.40725 * 17 16 15 20 20 N 1.31623 * 119.99893 * 28.44314 * 19 17 16 21 21 Si 1.86793 * 119.99903 * 208.45078 * 19 17 16 22 22 H 1.48503 * 109.47100 * 179.97438 * 21 19 17 23 23 H 1.48503 * 109.47335 * 299.99887 * 21 19 17 24 24 H 1.48502 * 109.47227 * 59.99961 * 21 19 17 25 25 C 1.47022 * 108.69976 * 335.54833 * 16 15 14 26 26 O 1.43744 * 107.42332 * 1.95055 * 6 5 4 27 27 H 1.09009 * 109.46759 * 182.88735 * 1 2 3 28 28 H 1.09002 * 109.47419 * 302.88208 * 1 2 3 29 29 H 1.08994 * 109.47403 * 62.88713 * 1 2 3 30 30 H 1.09001 * 110.90459 * 86.27628 * 4 2 1 31 31 H 1.09001 * 110.90307 * 322.66936 * 4 2 1 32 32 H 1.09001 * 110.48564 * 262.20351 * 5 4 2 33 33 H 1.09003 * 110.59830 * 139.61571 * 5 4 2 34 34 H 1.09003 * 109.46788 * 269.99854 * 11 10 8 35 35 H 1.08991 * 109.47177 * 29.99258 * 11 10 8 36 36 H 1.09001 * 109.47125 * 150.00028 * 11 10 8 37 37 H 1.09003 * 111.00636 * 324.13157 * 14 12 10 38 38 H 1.08995 * 111.00855 * 87.99089 * 14 12 10 39 39 H 1.09003 * 110.49732 * 278.44913 * 15 14 12 40 40 H 1.09002 * 110.34263 * 156.06155 * 15 14 12 41 41 H 0.96998 * 120.00170 * 5.66170 * 20 19 17 42 42 H 1.09002 * 109.87831 * 120.70897 * 25 16 15 43 43 H 1.09001 * 109.88102 * 241.86904 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0207 0.0000 4 6 2.0758 -0.7876 -1.2182 5 6 3.4795 -1.2156 -0.7251 6 6 3.3840 -1.1265 0.8103 7 1 4.0872 -0.3816 1.1828 8 6 3.6890 -2.4697 1.4216 9 8 2.8256 -3.0719 2.0238 10 7 4.9211 -3.0018 1.2989 11 6 5.9642 -2.2741 0.5717 12 6 5.2175 -4.3079 1.8927 13 1 4.3463 -4.6969 2.4196 14 6 6.4397 -4.2180 2.8441 15 6 6.9735 -5.6739 2.7996 16 7 6.7760 -6.1028 1.4030 17 6 7.4810 -7.0870 0.7630 18 1 7.4961 -7.1257 -0.3161 19 6 8.1761 -8.0349 1.5014 20 7 7.7599 -8.3661 2.7053 21 14 9.7023 -8.8403 0.7863 22 1 10.2562 -9.8087 1.7664 23 1 9.3451 -9.5529 -0.4666 24 1 10.7192 -7.7992 0.4910 25 6 5.6922 -5.3033 0.8132 26 8 2.0397 -0.7351 1.1359 27 1 -0.3633 -1.0265 0.0518 28 1 -0.3634 0.5579 0.8630 29 1 -0.3634 0.4683 -0.9147 30 1 2.1509 -0.1445 -2.0951 31 1 1.4550 -1.6586 -1.4281 32 1 4.2407 -0.5314 -1.1003 33 1 3.6999 -2.2371 -1.0351 34 1 5.9367 -2.5552 -0.4811 35 1 5.7922 -1.2019 0.6659 36 1 6.9397 -2.5237 0.9890 37 1 7.1805 -3.5149 2.4633 38 1 6.1299 -3.9481 3.8537 39 1 6.4033 -6.3104 3.4763 40 1 8.0323 -5.6973 3.0574 41 1 6.9236 -8.0103 3.0443 42 1 6.0635 -4.7592 -0.0553 43 1 4.8682 -5.9542 0.5209 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033437582.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:27 Heat of formation + Delta-G solvation = -74.621546 kcal Electronic energy + Delta-G solvation = -23179.387814 eV Core-core repulsion = 19838.484771 eV Total energy + Delta-G solvation = -3340.903043 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.73501 -40.12047 -38.87142 -36.51904 -34.40032 -33.30427 -32.62951 -31.03019 -29.56588 -28.04094 -27.42346 -26.15129 -23.56748 -22.28252 -22.18665 -21.95835 -20.21251 -19.60460 -18.56872 -17.84587 -17.44133 -16.70506 -16.39992 -16.20768 -15.72595 -15.40334 -15.16991 -15.00584 -14.82370 -14.48078 -14.26208 -13.89949 -13.51224 -13.40826 -13.28546 -13.14092 -12.75698 -12.65362 -12.54515 -12.53234 -12.46381 -12.43348 -11.89899 -11.89084 -11.79779 -11.73060 -11.61530 -11.12693 -10.58682 -10.46433 -9.76722 -9.07938 -8.37069 -5.41546 1.43451 1.57669 1.63943 1.67171 1.85565 2.63259 2.84872 3.14779 3.28126 3.49879 3.54840 3.66728 3.78120 3.80409 3.88456 4.05348 4.14882 4.22345 4.27557 4.31577 4.41438 4.43616 4.54677 4.62112 4.71007 4.76148 4.81623 4.87498 4.92114 4.93270 4.94624 4.98503 5.00738 5.16191 5.17812 5.25628 5.41349 5.64272 5.85812 6.25739 6.30869 6.82504 7.03736 7.64397 8.22467 8.93493 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.038957 B = 0.003551 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.575294 B = 7883.833088 C = 8098.322234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.061 3.939 3 H 0.100 0.900 4 C -0.147 4.147 5 C -0.142 4.142 6 C 0.068 3.932 7 H 0.126 0.874 8 C 0.504 3.496 9 O -0.582 6.582 10 N -0.595 5.595 11 C 0.064 3.936 12 C 0.140 3.860 13 H 0.076 0.924 14 C -0.122 4.122 15 C 0.148 3.852 16 N -0.619 5.619 17 C -0.351 4.351 18 H 0.062 0.938 19 C -0.077 4.077 20 N -0.942 5.942 21 Si 1.121 2.879 22 H -0.292 1.292 23 H -0.275 1.275 24 H -0.274 1.274 25 C 0.132 3.868 26 O -0.386 6.386 27 H 0.043 0.957 28 H 0.061 0.939 29 H 0.099 0.901 30 H 0.117 0.883 31 H 0.061 0.939 32 H 0.128 0.872 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.109 0.891 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.001 0.999 40 H 0.033 0.967 41 H 0.253 0.747 42 H 0.049 0.951 43 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.611 22.966 -9.357 25.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.004 3.996 3 H 0.117 0.883 4 C -0.184 4.184 5 C -0.180 4.180 6 C 0.007 3.993 7 H 0.143 0.857 8 C 0.293 3.707 9 O -0.462 6.462 10 N -0.328 5.328 11 C -0.077 4.077 12 C 0.035 3.965 13 H 0.094 0.906 14 C -0.161 4.161 15 C 0.022 3.978 16 N -0.347 5.347 17 C -0.479 4.479 18 H 0.080 0.920 19 C -0.273 4.273 20 N -0.583 5.583 21 Si 0.944 3.056 22 H -0.218 1.218 23 H -0.200 1.200 24 H -0.200 1.200 25 C 0.006 3.994 26 O -0.305 6.305 27 H 0.062 0.938 28 H 0.080 0.920 29 H 0.117 0.883 30 H 0.136 0.864 31 H 0.080 0.920 32 H 0.147 0.853 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.127 0.873 36 H 0.096 0.904 37 H 0.115 0.885 38 H 0.102 0.898 39 H 0.019 0.981 40 H 0.051 0.949 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges -5.911 21.514 -8.608 23.914 hybrid contribution -1.544 0.125 0.006 1.549 sum -7.455 21.639 -8.602 24.450 Atomic orbital electron populations 1.21815 0.92781 1.02188 1.03658 1.23563 0.95907 0.96120 0.83994 0.88252 1.23220 0.95043 1.00860 0.99286 1.23042 1.00208 1.04098 0.90646 1.22747 0.87227 0.92238 0.97058 0.85656 1.21405 0.81343 0.88476 0.79495 1.90679 1.47451 1.64006 1.44024 1.47777 1.11537 1.18828 1.54615 1.22232 0.90902 0.97662 0.96891 1.21716 0.97706 0.83232 0.93802 0.90588 1.23075 0.96851 0.96559 0.99599 1.21463 0.97676 0.92513 0.86135 1.44782 1.38460 1.40784 1.10646 1.20010 1.28442 1.07423 0.92025 0.92046 1.27340 1.06760 0.96145 0.97075 1.70910 1.23357 1.42571 1.21509 0.82798 0.72739 0.75404 0.74647 1.21847 1.20026 1.20007 1.21609 0.89677 0.92382 0.95760 1.89046 1.27215 1.73897 1.40374 0.93754 0.92035 0.88277 0.86430 0.92049 0.85337 0.91349 0.91003 0.87292 0.90355 0.88504 0.89806 0.98124 0.94865 0.93724 0.93321 0.98215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.66 71.98 0.70 -1.53 16 2 C 0.06 0.98 3.97 31.28 0.12 1.10 16 3 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 4 C -0.15 -1.98 6.59 31.90 0.21 -1.77 16 5 C -0.14 -2.05 5.24 31.58 0.17 -1.89 16 6 C 0.07 1.45 2.97 30.22 0.09 1.54 16 7 H 0.13 1.83 7.18 -2.39 -0.02 1.81 16 8 C 0.50 15.88 6.87 87.66 0.60 16.48 16 9 O -0.58 -24.98 15.90 15.67 0.25 -24.74 16 10 N -0.59 -17.21 2.89 -815.98 -2.35 -19.56 16 11 C 0.06 1.20 8.10 127.77 1.04 2.24 16 12 C 0.14 5.28 3.35 46.18 0.15 5.44 16 13 H 0.08 3.31 6.99 -2.39 -0.02 3.30 16 14 C -0.12 -4.38 6.63 32.06 0.21 -4.17 16 15 C 0.15 7.13 5.39 86.93 0.47 7.60 16 16 N -0.62 -32.42 3.26 -691.54 -2.26 -34.67 16 17 C -0.35 -20.21 10.00 84.03 0.84 -19.37 16 18 H 0.06 3.49 7.97 -2.91 -0.02 3.47 16 19 C -0.08 -4.48 5.10 84.86 0.43 -4.05 16 20 N -0.94 -59.19 13.01 21.65 0.28 -58.91 16 21 Si 1.12 51.06 30.00 68.60 2.06 53.12 16 22 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 23 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 24 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 25 C 0.13 5.78 6.88 86.73 0.60 6.38 16 26 O -0.39 -10.14 10.46 -130.27 -1.36 -11.50 16 27 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 1.06 8.06 -2.39 -0.02 1.04 16 32 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.07 1.25 7.33 -2.39 -0.02 1.23 16 34 H 0.07 1.21 7.60 -2.39 -0.02 1.20 16 35 H 0.11 1.16 6.19 -2.39 -0.01 1.14 16 36 H 0.08 1.57 6.09 -2.39 -0.01 1.55 16 37 H 0.10 2.99 6.11 -2.39 -0.01 2.98 16 38 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 39 H 0.00 0.05 6.81 -2.39 -0.02 0.04 16 40 H 0.03 1.70 8.08 -2.39 -0.02 1.68 16 41 H 0.25 16.34 6.19 -92.71 -0.57 15.76 16 42 H 0.05 1.95 6.94 -2.39 -0.02 1.93 16 43 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 Total: -1.00 -81.22 334.25 3.43 -77.79 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: 1.18 Total: 10.49 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: 5.63 Total: 7.99 kcal Atomic # 7 Polarization: -108.82 SS G_CDS: -4.33 Total: -113.14 kcal Atomic # 8 Polarization: -35.13 SS G_CDS: -1.11 Total: -36.24 kcal Atomic # 14 Polarization: 51.06 SS G_CDS: 2.06 Total: 53.12 kcal Total: -81.22 3.43 -77.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033437582.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.168 kcal (2) G-P(sol) polarization free energy of solvation -81.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds