Wall clock time and date at job start Tue Mar 31 2020 07:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 110.54148 * 2 1 4 4 C 1.54813 * 110.48971 * 237.38021 * 2 1 3 5 5 C 1.54988 * 102.09523 * 220.44665 * 4 2 1 6 6 O 1.44379 * 103.49479 * 37.02442 * 5 4 2 7 7 C 1.43751 * 106.97105 * 319.94093 * 6 5 4 8 8 H 1.09002 * 109.87682 * 266.93582 * 7 6 5 9 9 C 1.50698 * 109.87566 * 145.93623 * 7 6 5 10 10 O 1.21279 * 120.00163 * 356.45299 * 9 7 6 11 11 N 1.34781 * 119.99830 * 176.45649 * 9 7 6 12 12 C 1.46499 * 119.99912 * 180.02562 * 11 9 7 13 13 C 1.53010 * 110.88374 * 297.56637 * 12 11 9 14 14 C 1.55152 * 111.00397 * 173.64858 * 12 11 9 15 15 C 1.54336 * 103.02136 * 277.22618 * 14 12 11 16 16 N 1.47026 * 107.26214 * 338.14337 * 15 14 12 17 17 C 1.36942 * 125.64594 * 178.85090 * 16 15 14 18 18 H 1.07992 * 119.99706 * 186.34124 * 17 16 15 19 19 C 1.38812 * 119.99928 * 6.33469 * 17 16 15 20 20 N 1.31619 * 119.99814 * 7.38075 * 19 17 16 21 21 Si 1.86804 * 119.99683 * 187.38332 * 19 17 16 22 22 H 1.48500 * 109.46845 * 265.01760 * 21 19 17 23 23 H 1.48500 * 109.46905 * 145.01852 * 21 19 17 24 24 H 1.48502 * 109.47029 * 25.01940 * 21 19 17 25 25 C 1.47419 * 108.70506 * 358.57986 * 16 15 14 26 26 H 1.09001 * 109.47220 * 297.38020 * 1 2 3 27 27 H 1.08996 * 109.47329 * 57.38787 * 1 2 3 28 28 H 1.09007 * 109.47118 * 177.38530 * 1 2 3 29 29 H 1.09002 * 110.90402 * 102.24295 * 4 2 1 30 30 H 1.08999 * 110.93778 * 338.65972 * 4 2 1 31 31 H 1.09003 * 110.61632 * 278.52154 * 5 4 2 32 32 H 1.09003 * 110.62000 * 155.52861 * 5 4 2 33 33 H 0.97000 * 119.99968 * 359.97438 * 11 9 7 34 34 H 1.08993 * 109.46748 * 182.43078 * 13 12 11 35 35 H 1.08998 * 109.46954 * 302.42960 * 13 12 11 36 36 H 1.09000 * 109.46885 * 62.42895 * 13 12 11 37 37 H 1.09000 * 110.72506 * 35.78255 * 14 12 11 38 38 H 1.09004 * 110.72190 * 159.05818 * 14 12 11 39 39 H 1.08999 * 109.99761 * 218.66943 * 15 14 12 40 40 H 1.08996 * 109.77936 * 97.49134 * 15 14 12 41 41 H 0.96999 * 119.99355 * 179.97438 * 20 19 17 42 42 H 1.09002 * 110.36544 * 143.19496 * 25 16 15 43 43 H 1.08992 * 110.37197 * 265.41052 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0718 -0.7817 -1.2214 5 6 3.2659 -1.5562 -0.6077 6 8 2.7955 -1.9111 0.7104 7 6 2.0693 -0.7781 1.2159 8 1 2.7344 -0.1423 1.8003 9 6 0.9227 -1.2461 2.0745 10 8 0.6974 -2.4320 2.1917 11 7 0.1474 -0.3466 2.7122 12 6 -0.9669 -0.8016 3.5473 13 6 -2.0046 -1.5526 2.7104 14 6 -1.6163 0.3872 4.3039 15 6 -0.6982 0.5607 5.5323 16 7 0.0026 -0.7155 5.7370 17 6 0.9278 -0.9702 6.7139 18 1 1.4629 -1.9082 6.7195 19 6 1.1779 -0.0226 7.6970 20 7 0.4275 1.0558 7.7776 21 14 2.5794 -0.2779 8.9053 22 1 2.0563 -0.9081 10.1440 23 1 3.1915 1.0336 9.2376 24 1 3.6045 -1.1621 8.2948 25 6 -0.4604 -1.6774 4.7204 26 1 -0.3634 0.4726 0.9125 27 1 -0.3634 0.5538 -0.8656 28 1 -0.3634 -1.0267 -0.0469 29 1 2.4103 -0.0992 -2.0011 30 1 1.3200 -1.4694 -1.6086 31 1 4.1455 -0.9159 -0.5418 32 1 3.4839 -2.4507 -1.1912 33 1 0.3278 0.6018 2.6187 34 1 -2.8421 -1.8424 3.3448 35 1 -2.3624 -0.9058 1.9094 36 1 -1.5484 -2.4445 2.2809 37 1 -1.6124 1.2856 3.6867 38 1 -2.6301 0.1375 4.6170 39 1 -1.2946 0.8013 6.4124 40 1 0.0246 1.3543 5.3434 41 1 0.6021 1.7177 8.4648 42 1 0.3648 -2.3098 4.3928 43 1 -1.2710 -2.2883 5.1174 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046624106.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:30 Heat of formation + Delta-G solvation = -47.591875 kcal Electronic energy + Delta-G solvation = -24039.453258 eV Core-core repulsion = 20699.722310 eV Total energy + Delta-G solvation = -3339.730948 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.63766 -38.85096 -36.90429 -34.33311 -33.44358 -31.83929 -30.38734 -29.47443 -28.63130 -26.85127 -25.64144 -23.82891 -23.00018 -21.63251 -20.42501 -19.82373 -18.97558 -17.30544 -16.88482 -16.47643 -15.84201 -15.22780 -14.83300 -14.57433 -14.43817 -14.03705 -13.73201 -13.59133 -13.16328 -12.75561 -12.68196 -12.54815 -12.05380 -11.91010 -11.77065 -11.65947 -11.49753 -11.26677 -11.13082 -10.97964 -10.89609 -10.78150 -10.34894 -10.31637 -10.04670 -10.00211 -9.88804 -9.60550 -8.99852 -8.61478 -8.41930 -6.74334 -5.66387 -2.99813 2.95484 3.25058 3.43073 3.48780 3.51696 4.00969 4.27471 4.54502 4.55230 4.69315 4.91042 5.03010 5.11637 5.21381 5.34561 5.40235 5.42728 5.49657 5.53841 5.57743 5.64678 5.73705 5.74292 5.76322 5.89311 6.03010 6.10294 6.16413 6.18468 6.38300 6.41813 6.57059 6.70662 6.72263 6.90383 7.19188 7.46795 7.67931 7.83162 7.93467 8.31136 8.64919 9.27115 9.87876 10.54224 11.44308 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019843 B = 0.005404 C = 0.004730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.719586 B = 5180.049795 C = 5917.682550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.116 4.116 3 H 0.091 0.909 4 C -0.149 4.149 5 C 0.043 3.957 6 O -0.345 6.345 7 C 0.060 3.940 8 H 0.093 0.907 9 C 0.525 3.475 10 O -0.521 6.521 11 N -0.701 5.701 12 C 0.158 3.842 13 C -0.148 4.148 14 C -0.145 4.145 15 C 0.173 3.827 16 N -0.601 5.601 17 C -0.220 4.220 18 H 0.076 0.924 19 C -0.010 4.010 20 N -0.923 5.923 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.129 3.871 26 H 0.076 0.924 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.396 0.604 34 H 0.062 0.938 35 H 0.050 0.950 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.028 0.972 41 H 0.250 0.750 42 H 0.056 0.944 43 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.666 1.626 -18.599 18.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.135 4.135 3 H 0.109 0.891 4 C -0.187 4.187 5 C -0.034 4.034 6 O -0.263 6.263 7 C -0.002 4.002 8 H 0.110 0.890 9 C 0.310 3.690 10 O -0.396 6.396 11 N -0.354 5.354 12 C 0.072 3.928 13 C -0.207 4.207 14 C -0.183 4.183 15 C 0.048 3.952 16 N -0.327 5.327 17 C -0.349 4.349 18 H 0.093 0.907 19 C -0.206 4.206 20 N -0.571 5.571 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.003 3.997 26 H 0.095 0.905 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.112 0.888 33 H 0.232 0.768 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.046 0.954 41 H 0.061 0.939 42 H 0.074 0.926 43 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -0.695 0.654 -18.199 18.224 hybrid contribution 0.908 0.716 0.607 1.306 sum 0.213 1.371 -17.592 17.647 Atomic orbital electron populations 1.22239 0.93427 1.02965 1.03157 1.22484 0.97702 0.99836 0.93436 0.89063 1.23236 0.98525 0.99401 0.97538 1.23603 0.96002 0.99855 0.83915 1.89033 1.70746 1.35741 1.30763 1.22792 0.93342 0.88625 0.95437 0.88970 1.20022 0.82608 0.86609 0.79802 1.90663 1.70169 1.16406 1.62332 1.45921 1.31690 1.09173 1.48645 1.21460 0.85616 0.95879 0.89872 1.21993 0.98051 1.01029 0.99630 1.23207 1.00249 0.96149 0.98722 1.21198 0.92760 0.88369 0.92873 1.44442 1.47411 1.07933 1.32931 1.19069 1.12041 1.01612 1.02139 0.90664 1.24758 0.99688 0.97448 0.98687 1.69947 1.39819 1.11568 1.35816 0.86138 0.81932 0.76824 0.81172 1.21686 1.21739 1.20693 1.21902 0.97736 0.92374 0.87723 0.90515 0.92246 0.91913 0.90047 0.90174 0.92022 0.88760 0.76841 0.91896 0.93114 0.91104 0.91867 0.90793 0.92176 0.95359 0.93942 0.92589 0.95820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 7.92 37.15 0.29 -1.33 16 2 C -0.12 -1.16 3.64 -89.09 -0.32 -1.48 16 3 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 4 C -0.15 -1.32 6.70 -24.73 -0.17 -1.49 16 5 C 0.04 0.45 7.72 38.21 0.29 0.74 16 6 O -0.35 -5.39 10.74 -54.80 -0.59 -5.98 16 7 C 0.06 0.84 3.84 -27.31 -0.10 0.73 16 8 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 9 C 0.52 9.02 4.93 -10.98 -0.05 8.96 16 10 O -0.52 -10.94 13.33 -14.01 -0.19 -11.13 16 11 N -0.70 -11.18 3.47 -45.62 -0.16 -11.34 16 12 C 0.16 2.78 0.82 -129.67 -0.11 2.68 16 13 C -0.15 -2.26 8.59 37.16 0.32 -1.94 16 14 C -0.14 -2.53 5.99 -24.89 -0.15 -2.68 16 15 C 0.17 4.08 5.42 -3.06 -0.02 4.06 16 16 N -0.60 -15.62 3.39 -170.07 -0.58 -16.20 16 17 C -0.22 -6.34 10.26 -15.06 -0.15 -6.50 16 18 H 0.08 2.17 7.84 -52.49 -0.41 1.75 16 19 C -0.01 -0.29 5.45 -17.43 -0.09 -0.38 16 20 N -0.92 -27.18 10.48 55.49 0.58 -26.60 16 21 Si 0.91 22.67 29.56 -169.99 -5.02 17.64 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 25 C 0.13 2.91 6.10 -2.53 -0.02 2.90 16 26 H 0.08 0.80 5.22 -51.93 -0.27 0.53 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.76 7.58 -51.92 -0.39 0.37 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.74 7.85 -51.93 -0.41 0.34 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.40 5.46 7.55 -40.82 -0.31 5.15 16 34 H 0.06 0.90 8.11 -51.93 -0.42 0.48 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 1.20 6.53 -51.93 -0.34 0.86 16 37 H 0.06 0.93 8.05 -51.93 -0.42 0.51 16 38 H 0.07 1.22 8.02 -51.93 -0.42 0.81 16 39 H 0.06 1.60 6.99 -51.93 -0.36 1.24 16 40 H 0.03 0.72 7.91 -51.93 -0.41 0.31 16 41 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 42 H 0.06 1.38 6.32 -51.93 -0.33 1.05 16 43 H 0.02 0.54 8.04 -51.93 -0.42 0.13 16 LS Contribution 331.00 15.07 4.99 4.99 Total: -1.00 -33.88 331.00 -8.24 -42.12 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -7.00 Total: 2.21 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -0.28 Total: 4.27 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -0.15 Total: -54.14 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.78 Total: -17.11 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.88 -8.24 -42.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046624106.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.468 kcal (2) G-P(sol) polarization free energy of solvation -33.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds