Wall clock time and date at job start Tue Mar 31 2020 06:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 110.41909 * 2 1 4 4 C 1.54476 * 110.37261 * 237.69092 * 2 1 3 5 5 C 1.54514 * 104.06394 * 217.18961 * 4 2 1 6 6 C 1.54486 * 104.06075 * 359.97438 * 5 4 2 7 7 H 1.08999 * 110.46706 * 265.10564 * 6 5 4 8 8 C 1.50696 * 110.37094 * 142.81002 * 6 5 4 9 9 O 1.21283 * 119.99959 * 248.16703 * 8 6 5 10 10 N 1.34774 * 120.00248 * 68.16896 * 8 6 5 11 11 C 1.46499 * 120.00055 * 180.02562 * 10 8 6 12 12 C 1.53006 * 110.88496 * 300.69415 * 11 10 8 13 13 C 1.55163 * 111.00176 * 176.81986 * 11 10 8 14 14 C 1.54321 * 102.93656 * 277.38302 * 13 11 10 15 15 N 1.47018 * 107.27482 * 337.80943 * 14 13 11 16 16 C 1.36942 * 125.64541 * 178.96187 * 15 14 13 17 17 H 1.07999 * 119.99570 * 179.97438 * 16 15 14 18 18 C 1.38814 * 120.00099 * 359.97436 * 16 15 14 19 19 N 1.31612 * 119.99952 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99926 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47047 * 59.99599 * 20 18 16 22 22 H 1.48490 * 109.47220 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47177 * 300.00128 * 20 18 16 24 24 C 1.47419 * 108.70385 * 358.93758 * 15 14 13 25 25 O 1.44426 * 104.80283 * 23.97816 * 6 5 4 26 26 H 1.08999 * 109.47075 * 299.14382 * 1 2 3 27 27 H 1.09001 * 109.47069 * 59.14807 * 1 2 3 28 28 H 1.09001 * 109.46655 * 179.14681 * 1 2 3 29 29 H 1.09000 * 110.51312 * 335.83170 * 4 2 1 30 30 H 1.09000 * 110.51646 * 98.40764 * 4 2 1 31 31 H 1.08996 * 110.51444 * 241.35641 * 5 4 2 32 32 H 1.08997 * 110.51483 * 118.64015 * 5 4 2 33 33 H 0.97003 * 119.99985 * 359.97438 * 10 8 6 34 34 H 1.09001 * 109.46801 * 296.12355 * 12 11 10 35 35 H 1.09001 * 109.46998 * 56.11951 * 12 11 10 36 36 H 1.09000 * 109.47050 * 176.12243 * 12 11 10 37 37 H 1.08998 * 110.72136 * 35.74816 * 13 11 10 38 38 H 1.08998 * 110.71711 * 158.84505 * 13 11 10 39 39 H 1.09006 * 109.87923 * 97.22996 * 14 13 11 40 40 H 1.09009 * 109.88126 * 218.38723 * 14 13 11 41 41 H 0.97001 * 120.00300 * 180.02562 * 19 18 16 42 42 H 1.08995 * 110.37192 * 265.29094 * 24 15 14 43 43 H 1.09005 * 110.36729 * 142.96280 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0678 -0.7740 -1.2239 5 6 3.3179 -1.5057 -0.6859 6 6 3.3878 -1.0866 0.7994 7 1 4.0533 -0.2323 0.9234 8 6 3.8535 -2.2410 1.6488 9 8 3.0899 -2.7638 2.4327 10 7 5.1184 -2.6924 1.5374 11 6 5.5709 -3.8150 2.3628 12 6 5.4364 -3.4867 3.8512 13 6 7.0289 -4.2121 2.0105 14 6 6.8510 -5.1187 0.7744 15 7 5.4740 -5.6330 0.8048 16 6 4.9101 -6.4598 -0.1299 17 1 3.8861 -6.7838 -0.0166 18 6 5.6546 -6.8815 -1.2230 19 7 6.9027 -6.4870 -1.3607 20 14 4.8852 -8.0087 -2.4984 21 1 3.7062 -7.3390 -3.1040 22 1 5.8810 -8.3102 -3.5577 23 1 4.4561 -9.2727 -1.8474 24 6 4.8011 -5.1117 2.0084 25 8 2.0333 -0.7228 1.1443 26 1 -0.3633 0.5005 0.8976 27 1 -0.3633 0.5270 -0.8823 28 1 -0.3633 -1.0276 -0.0153 29 1 1.3276 -1.4920 -1.5772 30 1 2.3407 -0.0841 -2.0225 31 1 4.2110 -1.1773 -1.2174 32 1 3.1956 -2.5853 -0.7731 33 1 5.7291 -2.2745 0.9102 34 1 6.0952 -2.6550 4.1007 35 1 4.4048 -3.2116 4.0708 36 1 5.7134 -4.3597 4.4422 37 1 7.6190 -3.3304 1.7604 38 1 7.4882 -4.7615 2.8322 39 1 7.0107 -4.5403 -0.1356 40 1 7.5574 -5.9477 0.8180 41 1 7.4229 -6.7814 -2.1247 42 1 4.8729 -5.8305 2.8246 43 1 3.7571 -4.8857 1.7915 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046635781.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:38 Heat of formation + Delta-G solvation = -57.589950 kcal Electronic energy + Delta-G solvation = -23702.754353 eV Core-core repulsion = 20362.589856 eV Total energy + Delta-G solvation = -3340.164497 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.28355 -38.93379 -36.99403 -33.91491 -32.38600 -32.27572 -31.24468 -29.88640 -28.66696 -26.62118 -25.63045 -23.67455 -22.67512 -21.16095 -20.72076 -20.06600 -18.94032 -17.32853 -16.76268 -16.41397 -15.94617 -15.23006 -14.71218 -14.58483 -14.32867 -13.81200 -13.69737 -13.35720 -13.27751 -12.78807 -12.48893 -12.42546 -12.08172 -11.90064 -11.84092 -11.67473 -11.62933 -11.43867 -10.96802 -10.88822 -10.85762 -10.75281 -10.34185 -10.33197 -10.09507 -9.97439 -9.88433 -9.64020 -9.06104 -8.62981 -8.49783 -6.78419 -5.69599 -3.01202 2.96914 3.15762 3.41358 3.45671 3.47039 4.08244 4.51593 4.52508 4.65743 4.83080 4.93224 5.04088 5.14626 5.22100 5.34791 5.40225 5.42769 5.50285 5.56969 5.64770 5.74833 5.75855 5.79852 5.97293 6.04641 6.06368 6.12155 6.16202 6.18812 6.38869 6.42301 6.56633 6.72126 6.75682 6.86601 7.17629 7.55795 7.57882 7.81099 7.94002 8.27644 8.63661 9.25197 9.85185 10.51631 11.42392 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.014917 B = 0.005946 C = 0.004696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.579112 B = 4707.835602 C = 5961.660204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.067 3.933 3 H 0.068 0.932 4 C -0.149 4.149 5 C -0.145 4.145 6 C 0.060 3.940 7 H 0.088 0.912 8 C 0.522 3.478 9 O -0.521 6.521 10 N -0.699 5.699 11 C 0.158 3.842 12 C -0.152 4.152 13 C -0.146 4.146 14 C 0.178 3.822 15 N -0.603 5.603 16 C -0.221 4.221 17 H 0.075 0.925 18 C -0.009 4.009 19 N -0.925 5.925 20 Si 0.910 3.090 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.285 1.285 24 C 0.132 3.868 25 O -0.342 6.342 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.397 0.603 34 H 0.049 0.951 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.045 0.955 40 H 0.043 0.957 41 H 0.251 0.749 42 H 0.025 0.975 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.977 14.624 2.652 15.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.009 3.991 3 H 0.086 0.914 4 C -0.186 4.186 5 C -0.183 4.183 6 C -0.002 4.002 7 H 0.106 0.894 8 C 0.306 3.694 9 O -0.397 6.397 10 N -0.351 5.351 11 C 0.072 3.928 12 C -0.210 4.210 13 C -0.185 4.185 14 C 0.053 3.947 15 N -0.329 5.329 16 C -0.349 4.349 17 H 0.093 0.907 18 C -0.205 4.205 19 N -0.573 5.573 20 Si 0.740 3.260 21 H -0.213 1.213 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.005 3.995 25 O -0.261 6.261 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.231 0.769 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.043 0.957 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.590 14.070 3.221 15.146 hybrid contribution 0.178 -0.382 -1.328 1.393 sum -4.412 13.688 1.893 14.505 Atomic orbital electron populations 1.21786 0.93067 1.03202 1.02207 1.23036 0.95566 0.95221 0.85301 0.91393 1.23003 0.97801 0.99724 0.98118 1.22900 0.98991 1.03130 0.93245 1.22822 0.86691 0.96269 0.94410 0.89447 1.19979 0.82100 0.84094 0.83187 1.90663 1.53687 1.58175 1.37138 1.45693 1.12047 1.34742 1.42592 1.21480 0.95434 0.86417 0.89502 1.22019 1.03262 1.01239 0.94506 1.23227 0.93662 1.00324 1.01273 1.21145 0.86844 0.94549 0.92136 1.44431 1.09332 1.56001 1.23117 1.19016 0.96085 1.20135 0.99688 0.90705 1.24742 0.96220 1.00853 0.98662 1.69933 1.07812 1.48838 1.30746 0.86230 0.77880 0.80696 0.81172 1.21318 1.21641 1.21207 1.21883 0.96497 0.90935 0.90196 1.89261 1.25210 1.74223 1.37359 0.91871 0.91215 0.91541 0.90240 0.90395 0.89682 0.89264 0.76874 0.93177 0.90713 0.91851 0.91784 0.90873 0.93662 0.93874 0.93851 0.95711 0.92953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.53 37.16 0.35 -1.09 16 2 C 0.07 0.76 3.92 -25.95 -0.10 0.66 16 3 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 4 C -0.15 -1.63 6.63 -25.16 -0.17 -1.80 16 5 C -0.14 -1.89 6.62 -25.16 -0.17 -2.06 16 6 C 0.06 0.84 3.71 -27.11 -0.10 0.74 16 7 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 8 C 0.52 9.13 6.44 -10.99 -0.07 9.06 16 9 O -0.52 -11.07 13.34 -13.64 -0.18 -11.25 16 10 N -0.70 -11.50 5.18 -45.62 -0.24 -11.74 16 11 C 0.16 2.84 0.82 -129.67 -0.11 2.73 16 12 C -0.15 -2.41 8.63 37.16 0.32 -2.09 16 13 C -0.15 -2.58 5.98 -24.89 -0.15 -2.73 16 14 C 0.18 4.17 5.36 -3.07 -0.02 4.15 16 15 N -0.60 -15.42 3.39 -170.08 -0.58 -15.99 16 16 C -0.22 -6.24 10.28 -15.06 -0.15 -6.39 16 17 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 18 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 19 N -0.93 -26.75 10.31 55.49 0.57 -26.18 16 20 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 C 0.13 2.94 6.14 -2.53 -0.02 2.93 16 25 O -0.34 -5.34 10.60 -54.42 -0.58 -5.92 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.74 8.12 -51.93 -0.42 0.31 16 29 H 0.08 0.91 7.86 -51.93 -0.41 0.50 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.09 1.46 7.87 -51.93 -0.41 1.05 16 33 H 0.40 5.66 8.50 -40.82 -0.35 5.31 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 1.32 6.15 -51.93 -0.32 1.00 16 36 H 0.06 0.94 8.07 -51.93 -0.42 0.52 16 37 H 0.06 0.97 8.06 -51.93 -0.42 0.55 16 38 H 0.07 1.21 8.04 -51.93 -0.42 0.80 16 39 H 0.05 1.15 7.38 -51.93 -0.38 0.76 16 40 H 0.04 1.13 7.51 -51.92 -0.39 0.74 16 41 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.03 0.56 7.98 -51.93 -0.41 0.15 16 43 H 0.05 1.27 6.59 -51.93 -0.34 0.93 16 LS Contribution 338.52 15.07 5.10 5.10 Total: -1.00 -33.00 338.52 -8.59 -41.59 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -7.19 Total: 3.36 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -0.47 Total: 3.76 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: -0.24 Total: -53.91 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -0.76 Total: -17.16 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.00 -8.59 -41.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046635781.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.002 kcal (2) G-P(sol) polarization free energy of solvation -33.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds