Wall clock time and date at job start Tue Mar 31 2020 06:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 110.33014 * 2 1 4 4 C 1.54482 * 110.46525 * 237.68308 * 2 1 3 5 5 C 1.54795 * 104.09044 * 217.15178 * 4 2 1 6 6 C 1.54484 * 103.92528 * 359.97438 * 5 4 2 7 7 H 1.09002 * 110.37173 * 265.11623 * 6 5 4 8 8 C 1.50699 * 110.37285 * 142.89055 * 6 5 4 9 9 O 1.21284 * 120.00094 * 246.54559 * 8 6 5 10 10 N 1.34774 * 120.00099 * 66.54788 * 8 6 5 11 11 C 1.46494 * 120.00255 * 179.97438 * 10 8 6 12 12 C 1.53000 * 110.63936 * 56.86157 * 11 10 8 13 13 C 1.55161 * 110.72478 * 179.97438 * 11 10 8 14 14 C 1.54917 * 101.57684 * 82.86479 * 13 11 10 15 15 N 1.47420 * 104.83192 * 37.00966 * 14 13 11 16 16 C 1.36942 * 125.64385 * 155.91770 * 15 14 13 17 17 H 1.08000 * 119.99632 * 179.97438 * 16 15 14 18 18 C 1.38810 * 120.00383 * 359.97438 * 16 15 14 19 19 N 1.31620 * 119.99783 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00257 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46773 * 60.00103 * 20 18 16 22 22 H 1.48501 * 109.47269 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47261 * 300.00153 * 20 18 16 24 24 C 1.47018 * 108.70662 * 335.87483 * 15 14 13 25 25 O 1.44418 * 104.90071 * 24.00274 * 6 5 4 26 26 H 1.09007 * 109.47343 * 299.20482 * 1 2 3 27 27 H 1.08999 * 109.47452 * 59.20224 * 1 2 3 28 28 H 1.09006 * 109.47327 * 179.20638 * 1 2 3 29 29 H 1.09002 * 110.50759 * 335.78686 * 4 2 1 30 30 H 1.08997 * 110.51032 * 98.36017 * 4 2 1 31 31 H 1.08994 * 110.60751 * 241.37294 * 5 4 2 32 32 H 1.09001 * 110.55176 * 118.57275 * 5 4 2 33 33 H 0.96998 * 120.00081 * 0.02562 * 10 8 6 34 34 H 1.09000 * 109.47648 * 60.70103 * 12 11 10 35 35 H 1.09009 * 109.47163 * 180.70142 * 12 11 10 36 36 H 1.09003 * 109.47219 * 300.69867 * 12 11 10 37 37 H 1.08998 * 111.00740 * 200.93754 * 13 11 10 38 38 H 1.08998 * 111.00068 * 324.75993 * 13 11 10 39 39 H 1.09002 * 110.36593 * 155.85440 * 14 13 11 40 40 H 1.09002 * 110.36465 * 278.06112 * 14 13 11 41 41 H 0.96999 * 120.00327 * 180.02562 * 19 18 16 42 42 H 1.09008 * 109.87940 * 241.64079 * 24 15 14 43 43 H 1.08994 * 109.88354 * 120.47551 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0220 0.0000 4 6 2.0701 -0.7737 -1.2231 5 6 3.3230 -1.5051 -0.6832 6 6 3.3884 -1.0837 0.8016 7 1 4.0522 -0.2279 0.9243 8 6 3.8559 -2.2354 1.6537 9 8 3.1013 -2.7405 2.4577 10 7 5.1127 -2.7042 1.5224 11 6 5.5674 -3.8234 2.3511 12 6 4.6568 -5.0384 2.1630 13 6 7.0402 -4.1859 2.0240 14 6 7.8125 -3.1514 2.8802 15 7 7.0245 -3.0237 4.1195 16 6 7.5070 -2.6117 5.3331 17 1 6.8456 -2.5509 6.1847 18 6 8.8461 -2.2721 5.4687 19 7 9.6520 -2.3457 4.4307 20 14 9.5040 -1.7094 7.1240 21 1 9.3032 -2.7850 8.1280 22 1 10.9531 -1.4078 7.0041 23 1 8.7787 -0.4877 7.5556 24 6 5.6347 -3.4109 3.8366 25 8 2.0331 -0.7220 1.1451 26 1 -0.3634 0.5015 0.8971 27 1 -0.3634 0.5262 -0.8827 28 1 -0.3634 -1.0276 -0.0142 29 1 1.3313 -1.4929 -1.5768 30 1 2.3427 -0.0837 -2.0216 31 1 4.2171 -1.1765 -1.2129 32 1 3.2024 -2.5850 -0.7690 33 1 5.7164 -2.3000 0.8797 34 1 4.6812 -5.3528 1.1196 35 1 5.0045 -5.8546 2.7965 36 1 3.6361 -4.7738 2.4390 37 1 7.2711 -5.2036 2.3384 38 1 7.2495 -4.0499 0.9630 39 1 8.8149 -3.5167 3.1038 40 1 7.8654 -2.1939 2.3619 41 1 10.5878 -2.1088 4.5255 42 1 4.9704 -2.5657 4.0172 43 1 5.3483 -4.2517 4.4682 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046635782.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:42 Heat of formation + Delta-G solvation = -55.402754 kcal Electronic energy + Delta-G solvation = -23337.605943 eV Core-core repulsion = 19997.536289 eV Total energy + Delta-G solvation = -3340.069653 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.38742 -39.01790 -37.04455 -33.99871 -32.48800 -32.36198 -31.30344 -29.89870 -28.66350 -26.71705 -25.64269 -23.65869 -22.84195 -21.28728 -20.65807 -20.25220 -18.96162 -17.37115 -16.82583 -16.56077 -16.03660 -15.35080 -14.77956 -14.63008 -14.33846 -13.98970 -13.71093 -13.46506 -13.15168 -12.76326 -12.57854 -12.54091 -12.25437 -12.05753 -11.84162 -11.72471 -11.63195 -11.53063 -11.09766 -10.96286 -10.91951 -10.82361 -10.38211 -10.31862 -10.10103 -10.02308 -9.84693 -9.61954 -9.10460 -8.64752 -8.59320 -6.79427 -5.63278 -3.03526 2.85201 3.11433 3.43357 3.46937 3.48740 3.94948 4.32673 4.49283 4.52708 4.68052 4.81154 4.95573 5.08043 5.15823 5.26429 5.31243 5.41137 5.45014 5.51084 5.53290 5.59120 5.64357 5.75101 5.77155 5.83598 5.94506 6.06382 6.19218 6.24342 6.38341 6.47278 6.53701 6.67060 6.73330 6.86225 7.16760 7.45838 7.65360 7.81311 7.88666 8.37142 8.55603 9.25354 9.85953 10.50843 11.41090 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024442 B = 0.004139 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.307358 B = 6763.017759 C = 7169.781926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.065 3.935 3 H 0.070 0.930 4 C -0.148 4.148 5 C -0.144 4.144 6 C 0.057 3.943 7 H 0.093 0.907 8 C 0.520 3.480 9 O -0.518 6.518 10 N -0.705 5.705 11 C 0.161 3.839 12 C -0.152 4.152 13 C -0.146 4.146 14 C 0.153 3.847 15 N -0.604 5.604 16 C -0.218 4.218 17 H 0.076 0.924 18 C -0.012 4.012 19 N -0.926 5.926 20 Si 0.915 3.085 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.286 1.286 24 C 0.137 3.863 25 O -0.340 6.340 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.397 0.603 34 H 0.049 0.951 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.108 0.892 40 H 0.010 0.990 41 H 0.252 0.748 42 H 0.031 0.969 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.041 1.723 -15.039 19.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.007 3.993 3 H 0.088 0.912 4 C -0.186 4.186 5 C -0.182 4.182 6 C -0.004 4.004 7 H 0.111 0.889 8 C 0.304 3.696 9 O -0.393 6.393 10 N -0.358 5.358 11 C 0.075 3.925 12 C -0.210 4.210 13 C -0.185 4.185 14 C 0.028 3.972 15 N -0.330 5.330 16 C -0.346 4.346 17 H 0.094 0.906 18 C -0.207 4.207 19 N -0.575 5.575 20 Si 0.745 3.255 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.213 1.213 24 C 0.010 3.990 25 O -0.258 6.258 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.231 0.769 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.126 0.874 40 H 0.028 0.972 41 H 0.062 0.938 42 H 0.049 0.951 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -12.521 1.374 -14.130 18.929 hybrid contribution 0.818 0.735 0.316 1.144 sum -11.702 2.109 -13.814 18.227 Atomic orbital electron populations 1.21783 0.92996 1.03058 1.02412 1.23052 0.95625 0.95511 0.85119 0.91199 1.23050 0.97463 0.99773 0.98340 1.22949 0.99216 1.02123 0.93888 1.22857 0.86933 0.96821 0.93826 0.88931 1.19999 0.82195 0.83867 0.83496 1.90675 1.54426 1.58383 1.35792 1.45884 1.12661 1.35614 1.41613 1.21349 0.94368 0.85215 0.91539 1.22071 1.01497 0.96534 1.00924 1.23361 0.93177 1.02018 0.99946 1.21932 0.97442 0.93335 0.84513 1.44496 1.03147 1.78298 1.07062 1.19066 0.92939 1.36344 0.86299 0.90589 1.24750 0.96133 1.02117 0.97730 1.69764 1.04588 1.55144 1.27990 0.86144 0.77737 0.78555 0.83047 1.21153 1.21597 1.21278 1.21604 0.88240 0.97663 0.91496 1.89298 1.24973 1.74236 1.37322 0.91683 0.91198 0.91679 0.90354 0.90279 0.89582 0.90102 0.76893 0.93233 0.91790 0.90548 0.90502 0.91894 0.87444 0.97212 0.93782 0.95143 0.95134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.53 37.16 0.35 -0.91 16 2 C 0.06 0.66 3.92 -25.95 -0.10 0.56 16 3 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 4 C -0.15 -1.23 6.64 -25.01 -0.17 -1.40 16 5 C -0.14 -1.37 6.64 -25.01 -0.17 -1.54 16 6 C 0.06 0.76 3.70 -27.10 -0.10 0.66 16 7 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 8 C 0.52 8.78 6.29 -10.99 -0.07 8.71 16 9 O -0.52 -10.79 13.55 -13.66 -0.19 -10.97 16 10 N -0.71 -11.23 5.14 -45.91 -0.24 -11.47 16 11 C 0.16 2.92 0.81 -129.99 -0.10 2.82 16 12 C -0.15 -2.47 8.38 37.16 0.31 -2.16 16 13 C -0.15 -2.64 6.07 -24.58 -0.15 -2.79 16 14 C 0.15 3.61 5.87 -2.53 -0.01 3.60 16 15 N -0.60 -15.85 3.39 -170.07 -0.58 -16.43 16 16 C -0.22 -6.26 10.27 -15.06 -0.15 -6.42 16 17 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 18 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 19 N -0.93 -26.88 10.09 55.49 0.56 -26.32 16 20 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 C 0.14 3.13 6.20 -3.07 -0.02 3.11 16 25 O -0.34 -5.10 10.60 -54.44 -0.58 -5.68 16 26 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 29 H 0.08 0.62 7.87 -51.93 -0.41 0.21 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.82 7.87 -51.93 -0.41 0.41 16 33 H 0.40 5.31 8.49 -40.82 -0.35 4.97 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.06 1.00 8.12 -51.92 -0.42 0.58 16 36 H 0.08 1.37 6.03 -51.93 -0.31 1.06 16 37 H 0.08 1.37 8.05 -51.93 -0.42 0.96 16 38 H 0.06 0.95 8.07 -51.93 -0.42 0.53 16 39 H 0.11 2.87 5.88 -51.93 -0.31 2.57 16 40 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.25 7.10 8.31 -40.82 -0.34 6.77 16 42 H 0.03 0.76 6.90 -51.92 -0.36 0.41 16 43 H 0.03 0.71 7.81 -51.93 -0.41 0.31 16 LS Contribution 337.94 15.07 5.09 5.09 Total: -1.00 -33.63 337.94 -8.58 -42.21 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -7.15 Total: 2.34 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: -0.48 Total: 3.80 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: -0.25 Total: -54.22 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.76 Total: -16.65 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.63 -8.58 -42.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046635782.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.192 kcal (2) G-P(sol) polarization free energy of solvation -33.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds