Wall clock time and date at job start Tue Mar 31 2020 06:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.50705 * 109.47240 * 2 1 4 4 O 1.21274 * 119.99856 * 0.02562 * 3 2 1 5 5 N 1.34771 * 119.99960 * 179.97438 * 3 2 1 6 6 C 1.47171 * 121.06999 * 359.97438 * 5 3 2 7 7 C 1.53271 * 108.55263 * 231.14718 * 6 5 3 8 8 H 1.09008 * 109.51240 * 67.02163 * 7 6 5 9 9 C 1.53002 * 109.51384 * 187.12475 * 7 6 5 10 10 O 1.43099 * 109.22834 * 307.10251 * 7 6 5 11 11 C 1.42064 * 114.33209 * 61.14235 * 10 7 6 12 12 C 1.54525 * 110.32787 * 61.95301 * 11 10 7 13 13 C 1.55272 * 101.41832 * 83.75340 * 12 11 10 14 14 N 1.47482 * 104.77333 * 36.69832 * 13 12 11 15 15 C 1.36937 * 125.65707 * 155.88397 * 14 13 12 16 16 H 1.08004 * 119.99648 * 196.00776 * 15 14 13 17 17 C 1.38812 * 120.00697 * 16.00860 * 15 14 13 18 18 N 1.31618 * 120.00173 * 201.21292 * 17 15 14 19 19 Si 1.86803 * 119.99637 * 21.20674 * 17 15 14 20 20 H 1.48496 * 109.47118 * 275.67650 * 19 17 15 21 21 H 1.48500 * 109.47216 * 35.68029 * 19 17 15 22 22 H 1.48503 * 109.46743 * 155.67645 * 19 17 15 23 23 C 1.47180 * 108.67553 * 335.62136 * 14 13 12 24 24 C 1.47305 * 121.06761 * 180.02562 * 5 3 2 25 25 H 1.09003 * 109.47878 * 59.99800 * 1 2 3 26 26 H 1.09008 * 109.47182 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47396 * 299.99513 * 1 2 3 28 28 H 1.09002 * 109.47396 * 240.00487 * 2 1 3 29 29 H 1.09007 * 109.47534 * 120.00563 * 2 1 3 30 30 H 1.08997 * 109.61750 * 350.86794 * 6 5 3 31 31 H 1.08999 * 109.62371 * 111.23707 * 6 5 3 32 32 H 1.08999 * 109.46468 * 60.00079 * 9 7 6 33 33 H 1.08997 * 109.46853 * 179.97438 * 9 7 6 34 34 H 1.08999 * 109.47172 * 299.99901 * 9 7 6 35 35 H 1.09000 * 111.01215 * 202.00382 * 12 11 10 36 36 H 1.08999 * 111.01425 * 325.83837 * 12 11 10 37 37 H 1.09005 * 110.50399 * 277.84039 * 13 12 11 38 38 H 1.09001 * 110.32710 * 155.47346 * 13 12 11 39 39 H 0.96993 * 119.99889 * 180.02562 * 18 17 15 40 40 H 1.09006 * 109.90968 * 121.13500 * 23 14 13 41 41 H 1.08999 * 109.91052 * 242.20972 * 23 14 13 42 42 H 1.09008 * 109.67691 * 10.86349 * 24 5 3 43 43 H 1.08999 * 109.68498 * 250.32018 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3573 1.6671 0.0005 6 6 4.3343 0.5665 0.0017 7 6 5.3392 0.8076 1.1336 8 1 4.8341 0.7138 2.0950 9 6 6.4657 -0.2239 1.0453 10 8 5.8847 2.1245 1.0070 11 6 4.9243 3.1673 1.0997 12 6 4.2436 3.1484 2.4868 13 6 5.2649 3.9469 3.3413 14 7 5.7708 4.9975 2.4383 15 6 6.3112 6.1936 2.8288 16 1 6.4150 6.9978 2.1154 17 6 6.7255 6.3725 4.1415 18 7 6.8471 7.5872 4.6335 19 14 7.1103 4.8892 5.2098 20 1 5.8545 4.3733 5.8114 21 1 7.7331 3.8283 4.3781 22 1 8.0494 5.2870 6.2893 23 6 5.6042 4.5442 1.0480 24 6 3.8741 3.0465 0.0011 25 1 -0.3635 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8191 -0.3801 0.1649 31 1 4.8560 0.5391 -0.9550 32 1 6.9714 -0.1282 0.0845 33 1 7.1801 -0.0515 1.8503 34 1 6.0484 -1.2266 1.1380 35 1 3.2771 3.6513 2.4547 36 1 4.1390 2.1285 2.8570 37 1 6.0804 3.3000 3.6649 38 1 4.7697 4.3940 4.2033 39 1 7.1370 7.7122 5.5506 40 1 4.9766 5.2478 0.5008 41 1 6.5780 4.4625 0.5650 42 1 3.0589 3.7438 0.1945 43 1 4.3269 3.2693 -0.9650 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071112408.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:09 Heat of formation + Delta-G solvation = -43.775871 kcal Electronic energy + Delta-G solvation = -23974.474436 eV Core-core repulsion = 20634.908962 eV Total energy + Delta-G solvation = -3339.565474 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.80440 -39.00203 -36.69543 -34.76581 -33.43546 -32.74805 -31.66695 -29.73763 -28.91724 -26.78410 -26.36431 -24.24903 -23.04795 -22.28580 -20.63452 -19.72925 -19.02867 -17.42953 -17.17432 -16.62601 -16.06525 -15.83631 -15.21660 -14.90767 -14.45590 -14.26530 -14.17511 -13.50924 -13.34313 -12.96439 -12.92194 -12.62979 -12.51831 -12.41745 -12.21959 -11.96648 -11.81035 -11.78755 -11.42419 -11.27453 -11.20046 -11.13879 -10.95457 -10.46373 -10.11314 -9.98813 -9.79804 -9.74139 -9.37744 -8.70440 -8.52282 -7.03492 -5.90225 -3.20589 2.50779 2.76242 3.36585 3.50631 3.54037 3.64021 4.27593 4.49660 4.58000 4.65291 4.79400 4.79978 4.85784 4.89998 4.96214 5.06260 5.16648 5.25031 5.32097 5.40602 5.44735 5.52311 5.53034 5.60194 5.69441 5.76325 5.80530 5.86383 5.97972 5.99736 6.08235 6.18349 6.29856 6.40889 6.51436 6.59016 6.77321 7.23309 7.44089 7.69555 8.04549 8.33951 8.85042 9.71765 10.18882 11.25893 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023095 B = 0.005256 C = 0.004834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.074993 B = 5325.664564 C = 5791.015863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.143 4.143 3 C 0.513 3.487 4 O -0.537 6.537 5 N -0.615 5.615 6 C 0.079 3.921 7 C 0.066 3.934 8 H 0.066 0.934 9 C -0.142 4.142 10 O -0.352 6.352 11 C 0.095 3.905 12 C -0.152 4.152 13 C 0.113 3.887 14 N -0.607 5.607 15 C -0.239 4.239 16 H 0.095 0.905 17 C 0.021 3.979 18 N -0.911 5.911 19 Si 0.884 3.116 20 H -0.287 1.287 21 H -0.274 1.274 22 H -0.303 1.303 23 C 0.154 3.846 24 C 0.098 3.902 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.031 0.969 38 H 0.060 0.940 39 H 0.263 0.737 40 H 0.051 0.949 41 H 0.046 0.954 42 H 0.105 0.895 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.258 -20.531 -10.188 24.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.183 4.183 3 C 0.302 3.698 4 O -0.414 6.414 5 N -0.349 5.349 6 C -0.044 4.044 7 C 0.008 3.992 8 H 0.084 0.916 9 C -0.200 4.200 10 O -0.271 6.271 11 C 0.054 3.946 12 C -0.191 4.191 13 C -0.012 4.012 14 N -0.334 5.334 15 C -0.366 4.366 16 H 0.113 0.887 17 C -0.178 4.178 18 N -0.555 5.555 19 Si 0.715 3.285 20 H -0.214 1.214 21 H -0.200 1.200 22 H -0.231 1.231 23 C 0.028 3.972 24 C -0.025 4.025 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.049 0.951 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.123 0.877 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.413 -19.792 -10.072 23.412 hybrid contribution 0.224 -0.944 0.779 1.244 sum -7.189 -20.736 -9.293 23.833 Atomic orbital electron populations 1.21536 0.92929 1.01491 1.03499 1.21657 0.98678 0.93935 1.04027 1.20772 0.81390 0.91942 0.75738 1.90708 1.54535 1.46587 1.49554 1.48246 1.05547 1.07384 1.73750 1.22506 0.91248 0.90217 1.00443 1.22494 0.94657 0.84888 0.97209 0.91642 1.21708 0.98032 0.96554 1.03680 1.87938 1.33222 1.12749 1.93177 1.22285 0.88812 0.89508 0.93965 1.23288 0.99591 1.00297 0.95877 1.22031 0.94167 0.90673 0.94331 1.44797 1.71893 1.17208 0.99527 1.18657 1.34871 0.86904 0.96153 0.88734 1.24919 1.00101 0.96104 0.96626 1.69821 1.50439 1.19983 1.15288 0.87009 0.77846 0.83762 0.79895 1.21433 1.19997 1.23138 1.21107 0.98416 0.88721 0.88921 1.22153 0.97834 0.83258 0.99225 0.91966 0.92129 0.91874 0.89040 0.89015 0.89042 0.90356 0.91535 0.91194 0.91073 0.90236 0.91516 0.95146 0.92195 0.92739 0.93157 0.93558 0.87691 0.90704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.20 37.15 0.34 -0.83 16 2 C -0.14 -1.18 4.79 -27.89 -0.13 -1.32 16 3 C 0.51 6.54 7.71 -10.99 -0.08 6.46 16 4 O -0.54 -9.00 15.47 5.56 0.09 -8.92 16 5 N -0.62 -7.61 2.91 -172.66 -0.50 -8.11 16 6 C 0.08 0.74 5.81 -3.54 -0.02 0.72 16 7 C 0.07 0.77 3.17 -26.59 -0.08 0.69 16 8 H 0.07 0.80 6.13 -51.92 -0.32 0.48 16 9 C -0.14 -1.29 9.57 37.16 0.36 -0.94 16 10 O -0.35 -5.72 9.87 -35.23 -0.35 -6.07 16 11 C 0.09 1.61 0.83 -89.76 -0.07 1.54 16 12 C -0.15 -2.76 5.92 -24.73 -0.15 -2.91 16 13 C 0.11 2.58 4.68 -2.30 -0.01 2.57 16 14 N -0.61 -15.18 3.25 -170.08 -0.55 -15.74 16 15 C -0.24 -6.94 10.60 -15.06 -0.16 -7.10 16 16 H 0.10 2.87 8.06 -52.48 -0.42 2.45 16 17 C 0.02 0.61 5.45 -17.43 -0.09 0.52 16 18 N -0.91 -28.64 13.97 55.49 0.78 -27.86 16 19 Si 0.88 23.26 24.23 -169.99 -4.12 19.15 16 20 H -0.29 -7.28 6.39 56.52 0.36 -6.92 16 21 H -0.27 -7.17 6.45 56.52 0.36 -6.81 16 22 H -0.30 -8.03 7.11 56.52 0.40 -7.63 16 23 C 0.15 3.15 6.61 -3.33 -0.02 3.12 16 24 C 0.10 1.43 5.16 -3.88 -0.02 1.41 16 25 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 26 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 27 H 0.06 0.63 8.10 -51.93 -0.42 0.20 16 28 H 0.09 0.56 8.01 -51.93 -0.42 0.14 16 29 H 0.09 0.61 7.67 -51.93 -0.40 0.21 16 30 H 0.09 0.58 6.05 -51.93 -0.31 0.26 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 1.46 7.86 -51.93 -0.41 1.05 16 36 H 0.07 1.08 5.98 -51.93 -0.31 0.77 16 37 H 0.03 0.73 5.55 -51.93 -0.29 0.45 16 38 H 0.06 1.46 6.25 -51.93 -0.32 1.14 16 39 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 40 H 0.05 0.98 7.79 -51.93 -0.40 0.57 16 41 H 0.05 0.96 8.07 -51.93 -0.42 0.55 16 42 H 0.10 1.70 6.89 -51.92 -0.36 1.34 16 43 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 326.84 15.07 4.93 4.93 Total: -1.00 -34.60 326.84 -6.86 -41.47 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -6.97 Total: -2.79 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: -0.15 Total: 3.95 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: -0.28 Total: -51.71 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.26 Total: -14.98 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -4.12 Total: 19.15 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.60 -6.86 -41.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071112408.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.310 kcal (2) G-P(sol) polarization free energy of solvation -34.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds