Wall clock time and date at job start Tue Mar 31 2020 06:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 115.54635 * 2 1 4 4 C 1.52996 * 117.51660 * 145.69442 * 2 1 3 5 5 C 1.52997 * 117.50207 * 214.32431 * 2 1 3 6 6 H 1.08997 * 117.49532 * 359.97438 * 5 2 1 7 7 C 1.50699 * 117.49956 * 144.99759 * 5 2 1 8 8 O 1.21278 * 120.00032 * 0.02562 * 7 5 2 9 9 N 1.34783 * 119.99688 * 179.97438 * 7 5 2 10 10 C 1.46497 * 119.99576 * 179.97438 * 9 7 5 11 11 C 1.53000 * 109.46970 * 180.02562 * 10 9 7 12 12 H 1.08996 * 108.56967 * 60.00459 * 11 10 9 13 13 C 1.46922 * 108.61958 * 177.94773 * 11 10 9 14 14 N 1.50102 * 106.78393 * 178.04091 * 13 11 10 15 15 C 1.36939 * 120.74780 * 111.20106 * 14 13 11 16 16 H 1.07997 * 119.99835 * 155.69856 * 15 14 13 17 17 C 1.38814 * 119.99942 * 335.69510 * 15 14 13 18 18 N 1.31610 * 120.00331 * 340.86715 * 17 15 14 19 19 Si 1.86802 * 119.99755 * 160.86711 * 17 15 14 20 20 H 1.48500 * 109.46984 * 60.00242 * 19 17 15 21 21 H 1.48497 * 109.47138 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47185 * 300.00110 * 19 17 15 23 23 C 1.43418 * 118.61719 * 291.15496 * 14 13 11 24 24 C 1.55332 * 116.23997 * 89.40147 * 23 14 13 25 25 C 1.55189 * 108.87126 * 319.46982 * 24 23 14 26 26 O 1.39636 * 110.57099 * 322.13595 * 25 24 23 27 27 H 1.09000 * 109.47491 * 205.58674 * 1 2 3 28 28 H 1.08995 * 109.47598 * 325.59152 * 1 2 3 29 29 H 1.09003 * 109.47300 * 85.58851 * 1 2 3 30 30 H 1.09006 * 117.49535 * 214.97431 * 4 2 1 31 31 H 1.09004 * 117.50249 * 359.97438 * 4 2 1 32 32 H 0.97001 * 119.99948 * 0.02562 * 9 7 5 33 33 H 1.08997 * 109.47281 * 300.00377 * 10 9 7 34 34 H 1.09000 * 109.46876 * 60.00335 * 10 9 7 35 35 H 1.08995 * 109.98938 * 297.23771 * 13 11 10 36 36 H 1.08999 * 109.99071 * 58.60361 * 13 11 10 37 37 H 0.97001 * 120.00503 * 179.97438 * 18 17 15 38 38 H 1.09000 * 108.12672 * 327.65006 * 23 14 13 39 39 H 1.08996 * 108.13232 * 211.15909 * 23 14 13 40 40 H 1.09000 * 109.57702 * 199.64854 * 24 23 14 41 41 H 1.09003 * 109.56866 * 79.28335 * 24 23 14 42 42 H 1.09007 * 109.25503 * 201.85951 * 25 24 23 43 43 H 1.09001 * 109.25843 * 82.42599 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0000 0.9835 0.0000 4 6 2.2368 -1.1208 0.7648 5 6 2.2365 -1.1208 -0.7652 6 1 1.6113 -1.8583 -1.2683 7 6 3.5290 -0.7805 -1.4614 8 8 3.9715 0.3470 -1.4015 9 7 4.1938 -1.7297 -2.1497 10 6 5.4500 -1.3988 -2.8269 11 6 5.9944 -2.6445 -3.5289 12 1 5.2575 -2.9823 -4.2576 13 6 7.2264 -2.2805 -4.2418 14 7 7.7497 -3.5379 -4.8727 15 6 7.7366 -3.6967 -6.2328 16 1 8.4329 -4.3745 -6.7041 17 6 6.8283 -2.9865 -7.0058 18 7 5.7557 -2.4656 -6.4487 19 14 7.1284 -2.7701 -8.8368 20 1 7.1898 -4.1027 -9.4892 21 1 6.0206 -1.9787 -9.4298 22 1 8.4136 -2.0563 -9.0469 23 6 8.2653 -4.5705 -4.0214 24 6 7.2397 -5.6251 -3.5224 25 6 5.9150 -4.9036 -3.1578 26 8 6.1770 -3.6701 -2.5582 27 1 -0.3634 -0.9269 0.4438 28 1 -0.3634 0.8478 0.5807 29 1 -0.3634 0.0790 -1.0246 30 1 3.1720 -0.8748 1.2678 31 1 1.6119 -1.8584 1.2685 32 1 3.8400 -2.6317 -2.1973 33 1 5.2702 -0.6162 -3.5639 34 1 6.1763 -1.0478 -2.0939 35 1 7.0063 -1.5425 -5.0131 36 1 7.9586 -1.8809 -3.5403 37 1 5.1212 -1.9690 -6.9887 38 1 8.7163 -4.0972 -3.1492 39 1 9.0538 -5.0938 -4.5621 40 1 7.6348 -6.1304 -2.6412 41 1 7.0532 -6.3544 -4.3108 42 1 5.3454 -5.5253 -2.4669 43 1 5.3302 -4.7460 -4.0641 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073736672.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:38 Heat of formation + Delta-G solvation = -33.445589 kcal Electronic energy + Delta-G solvation = -23191.318834 eV Core-core repulsion = 19852.201315 eV Total energy + Delta-G solvation = -3339.117519 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.85055 -38.90566 -36.76428 -35.01357 -34.42367 -32.16608 -31.18016 -29.10063 -28.46948 -25.86806 -25.32880 -23.63679 -22.26898 -20.83773 -20.78774 -19.71513 -19.54301 -17.35653 -17.00283 -16.03929 -15.60744 -15.04858 -14.86272 -14.63598 -14.32476 -13.97092 -13.91339 -13.58603 -13.22358 -13.01859 -12.73049 -12.55980 -12.27831 -12.10384 -11.92252 -11.51415 -11.41522 -11.23017 -10.84292 -10.75239 -10.50623 -10.41481 -10.17861 -10.14303 -9.97649 -9.70713 -9.58123 -9.48804 -8.80659 -8.63899 -8.50849 -6.83346 -5.93179 -3.31997 2.73296 3.33271 3.40016 3.41567 3.44579 3.82713 4.42631 4.65080 4.70224 4.71087 4.82708 5.19404 5.21708 5.23704 5.27640 5.53062 5.58875 5.61470 5.72050 5.81171 5.86475 5.90910 5.92814 6.01174 6.14671 6.21474 6.32619 6.41192 6.47613 6.58483 6.66240 6.70475 6.81009 6.93212 6.95821 7.11531 7.32005 7.70459 7.87648 8.12907 8.31188 8.54706 9.05989 9.74110 10.28629 11.15972 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020507 B = 0.004384 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.063705 B = 6385.089668 C = 7198.494033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.125 4.125 3 H 0.116 0.884 4 C -0.150 4.150 5 C -0.188 4.188 6 H 0.121 0.879 7 C 0.537 3.463 8 O -0.552 6.552 9 N -0.709 5.709 10 C 0.121 3.879 11 C 0.061 3.939 12 H 0.107 0.893 13 C 0.143 3.857 14 N -0.587 5.587 15 C -0.250 4.250 16 H 0.069 0.931 17 C 0.003 3.997 18 N -0.908 5.908 19 Si 0.905 3.095 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.284 1.284 23 C 0.160 3.840 24 C -0.172 4.172 25 C 0.067 3.933 26 O -0.370 6.370 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.401 0.599 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.104 0.896 36 H 0.019 0.981 37 H 0.256 0.744 38 H 0.031 0.969 39 H 0.033 0.967 40 H 0.049 0.951 41 H 0.056 0.944 42 H 0.051 0.949 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.797 -0.656 10.868 13.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.143 4.143 3 H 0.134 0.866 4 C -0.187 4.187 5 C -0.209 4.209 6 H 0.139 0.861 7 C 0.323 3.677 8 O -0.430 6.430 9 N -0.358 5.358 10 C -0.003 4.003 11 C 0.002 3.998 12 H 0.124 0.876 13 C 0.018 3.982 14 N -0.308 5.308 15 C -0.379 4.379 16 H 0.087 0.913 17 C -0.195 4.195 18 N -0.553 5.553 19 Si 0.735 3.265 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.211 1.211 23 C 0.031 3.969 24 C -0.213 4.213 25 C -0.011 4.011 26 O -0.288 6.288 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.116 0.884 31 H 0.120 0.880 32 H 0.235 0.765 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.122 0.878 36 H 0.038 0.962 37 H 0.066 0.934 38 H 0.050 0.950 39 H 0.051 0.949 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.493 0.284 10.971 13.289 hybrid contribution -0.155 -0.632 -1.339 1.489 sum -7.648 -0.349 9.632 12.304 Atomic orbital electron populations 1.21393 0.92430 1.01999 1.02161 1.22351 0.95015 0.95189 1.01794 0.86573 1.23073 1.03028 1.01435 0.91191 1.22316 0.98085 1.04927 0.95608 0.86097 1.19602 0.84610 0.84847 0.78611 1.90664 1.68942 1.21225 1.62210 1.45852 1.24628 1.13112 1.52240 1.21705 0.84182 0.98330 0.96096 1.22200 1.01187 0.86907 0.89476 0.87555 1.20743 0.91582 0.90482 0.95386 1.44095 1.72753 1.11633 1.02314 1.19229 1.12680 1.24460 0.81580 0.91315 1.24897 0.94838 1.01673 0.98085 1.69849 1.10232 1.39845 1.35408 0.86330 0.77318 0.77854 0.85044 1.21017 1.21627 1.21065 1.20370 0.93631 0.89607 0.93245 1.23580 0.98665 0.99775 0.99281 1.22343 0.96235 0.85621 0.96870 1.87514 1.90688 1.15368 1.35250 0.92450 0.91840 0.91954 0.88350 0.87989 0.76528 0.90422 0.92100 0.87826 0.96246 0.93393 0.95041 0.94910 0.93187 0.92502 0.93120 0.91923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 10.19 37.16 0.38 -0.65 16 2 C -0.12 -1.38 5.92 -90.62 -0.54 -1.92 16 3 H 0.12 1.48 7.67 -51.93 -0.40 1.08 16 4 C -0.15 -1.55 9.88 -26.73 -0.26 -1.82 16 5 C -0.19 -2.30 5.91 -91.77 -0.54 -2.85 16 6 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 7 C 0.54 8.84 7.61 -10.98 -0.08 8.76 16 8 O -0.55 -11.03 16.26 5.56 0.09 -10.94 16 9 N -0.71 -11.65 5.41 -60.30 -0.33 -11.98 16 10 C 0.12 2.28 5.25 -4.04 -0.02 2.26 16 11 C 0.06 1.24 1.98 -29.64 -0.06 1.19 16 12 H 0.11 2.43 5.24 -51.93 -0.27 2.16 16 13 C 0.14 3.25 4.71 -4.94 -0.02 3.23 16 14 N -0.59 -14.11 2.61 -174.52 -0.46 -14.57 16 15 C -0.25 -6.52 9.62 -15.06 -0.14 -6.66 16 16 H 0.07 1.79 7.88 -52.49 -0.41 1.37 16 17 C 0.00 0.07 4.93 -17.43 -0.09 -0.01 16 18 N -0.91 -23.72 9.56 55.49 0.53 -23.19 16 19 Si 0.90 20.86 29.59 -169.99 -5.03 15.83 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 C 0.16 3.39 5.32 -4.44 -0.02 3.37 16 24 C -0.17 -3.20 6.75 -24.34 -0.16 -3.36 16 25 C 0.07 1.25 6.38 38.32 0.24 1.49 16 26 O -0.37 -7.24 9.44 -31.92 -0.30 -7.54 16 27 H 0.06 0.42 7.90 -51.93 -0.41 0.01 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.10 0.83 8.05 -51.93 -0.42 0.41 16 32 H 0.40 5.91 8.26 -40.82 -0.34 5.58 16 33 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.10 2.59 6.03 -51.93 -0.31 2.27 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 38 H 0.03 0.65 7.98 -51.93 -0.41 0.24 16 39 H 0.03 0.68 7.96 -51.93 -0.41 0.27 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.06 1.31 6.66 -51.93 -0.35 0.96 16 LS Contribution 342.00 15.07 5.15 5.15 Total: -1.00 -28.54 342.00 -8.76 -37.30 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -7.10 Total: 6.91 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -1.33 Total: 3.02 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: -0.25 Total: -49.73 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.21 Total: -18.48 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.83 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.54 -8.76 -37.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073736672.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.855 kcal (2) G-P(sol) polarization free energy of solvation -28.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds