Wall clock time and date at job start Tue Mar 31 2020 06:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 115.56044 * 2 1 4 4 C 1.53004 * 117.49972 * 145.68610 * 2 1 3 5 5 C 1.52997 * 117.50006 * 214.31044 * 2 1 3 6 6 H 1.09001 * 117.49882 * 0.02562 * 5 2 1 7 7 C 1.50701 * 117.50163 * 145.01732 * 5 2 1 8 8 O 1.21282 * 119.99839 * 0.02562 * 7 5 2 9 9 N 1.34776 * 120.00228 * 180.02562 * 7 5 2 10 10 C 1.46503 * 119.99982 * 180.02562 * 9 7 5 11 11 C 1.52995 * 109.47138 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.40443 * 304.83421 * 11 10 9 13 13 C 1.54298 * 109.40497 * 184.99981 * 11 10 9 14 14 N 1.48183 * 110.69126 * 200.48947 * 13 11 10 15 15 C 1.36938 * 118.50844 * 138.77112 * 14 13 11 16 16 H 1.08003 * 119.99774 * 206.11466 * 15 14 13 17 17 C 1.38813 * 120.00326 * 26.12215 * 15 14 13 18 18 N 1.31614 * 119.99768 * 15.50798 * 17 15 14 19 19 Si 1.86799 * 120.00078 * 195.51821 * 17 15 14 20 20 H 1.48505 * 109.47158 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47187 * 119.99324 * 19 17 15 22 22 H 1.48498 * 109.46923 * 239.99519 * 19 17 15 23 23 C 1.44459 * 122.97418 * 318.74980 * 14 13 11 24 24 C 1.54870 * 109.32821 * 88.96039 * 23 14 13 25 25 C 1.47695 * 109.67889 * 290.10139 * 24 23 14 26 26 O 1.40526 * 109.40620 * 64.59356 * 11 10 9 27 27 H 1.09008 * 109.46736 * 205.69112 * 1 2 3 28 28 H 1.08995 * 109.46962 * 325.68644 * 1 2 3 29 29 H 1.08995 * 109.46840 * 85.69448 * 1 2 3 30 30 H 1.08998 * 117.49853 * 0.02562 * 4 2 1 31 31 H 1.08998 * 117.49779 * 214.97937 * 4 2 1 32 32 H 0.96996 * 119.99630 * 0.27511 * 9 7 5 33 33 H 1.08998 * 109.47212 * 299.99859 * 10 9 7 34 34 H 1.09004 * 109.47041 * 59.99873 * 10 9 7 35 35 H 1.09001 * 109.23195 * 320.80130 * 13 11 10 36 36 H 1.08997 * 109.23331 * 80.22140 * 13 11 10 37 37 H 0.97005 * 119.99983 * 179.97438 * 18 17 15 38 38 H 1.08998 * 109.49097 * 208.91122 * 23 14 13 39 39 H 1.08998 * 109.49303 * 329.00033 * 23 14 13 40 40 H 1.09000 * 109.43911 * 50.16140 * 24 23 14 41 41 H 1.09001 * 109.44136 * 170.03637 * 24 23 14 42 42 H 1.08994 * 108.64417 * 181.88393 * 25 24 23 43 43 H 1.09004 * 108.64337 * 299.72019 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2365 -1.1210 0.7651 5 6 2.2365 -1.1210 -0.7650 6 1 1.6113 -1.8582 -1.2686 7 6 3.5293 -0.7811 -1.4609 8 8 3.9720 0.3464 -1.4009 9 7 4.1935 -1.7301 -2.1498 10 6 5.4505 -1.3998 -2.8259 11 6 5.9941 -2.6453 -3.5289 12 1 6.0910 -3.4557 -2.8064 13 6 7.3780 -2.3296 -4.1337 14 7 7.7139 -3.2964 -5.2053 15 6 8.3100 -2.8274 -6.3454 16 1 8.1926 -3.3632 -7.2758 17 6 9.0653 -1.6634 -6.3054 18 7 9.4655 -1.1781 -5.1493 19 14 9.5135 -0.7858 -7.8923 20 1 8.9471 -1.5294 -9.0462 21 1 8.9587 0.5915 -7.8700 22 1 10.9914 -0.7221 -8.0223 23 6 7.4414 -4.7113 -5.1014 24 6 6.0190 -5.0003 -5.6416 25 6 5.0125 -4.4459 -4.7137 26 8 5.1053 -3.0325 -4.5462 27 1 -0.3633 -0.9262 0.4456 28 1 -0.3633 0.8488 0.5793 29 1 -0.3633 0.0771 -1.0247 30 1 1.6113 -1.8587 1.2680 31 1 3.1716 -0.8751 1.2683 32 1 3.8373 -2.6309 -2.2011 33 1 5.2721 -0.6162 -3.5622 34 1 6.1768 -1.0503 -2.0920 35 1 7.3667 -1.3222 -4.5497 36 1 8.1336 -2.3861 -3.3502 37 1 9.9936 -0.3649 -5.1213 38 1 8.1731 -5.2666 -5.6882 39 1 7.5034 -5.0179 -4.0573 40 1 5.9023 -4.5379 -6.6217 41 1 5.8765 -6.0773 -5.7300 42 1 4.0193 -4.6877 -5.0920 43 1 5.1367 -4.9210 -3.7405 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073736673.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:42 Heat of formation + Delta-G solvation = -37.086288 kcal Electronic energy + Delta-G solvation = -22870.153877 eV Core-core repulsion = 19530.878486 eV Total energy + Delta-G solvation = -3339.275392 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.96299 -38.83056 -36.89939 -35.12882 -34.54676 -32.55511 -31.09801 -29.26405 -28.53743 -25.89233 -25.34191 -23.76556 -22.29898 -20.98768 -20.91534 -20.05819 -19.49901 -17.47139 -16.88973 -16.26825 -15.87864 -15.16497 -15.04755 -14.88584 -14.33833 -14.09183 -13.87960 -13.48459 -13.32627 -12.90012 -12.89258 -12.50967 -12.39166 -12.28199 -12.19461 -11.78146 -11.59844 -11.14628 -10.87321 -10.72657 -10.57357 -10.52700 -10.25282 -10.20484 -10.01868 -9.93207 -9.74134 -9.61838 -8.88055 -8.82414 -8.40116 -6.69357 -5.77357 -3.20239 2.58661 3.25192 3.40245 3.48175 3.49930 3.69694 4.27456 4.51551 4.55694 4.59617 4.67760 5.06991 5.10975 5.14994 5.38314 5.43653 5.45583 5.49241 5.52757 5.54403 5.62729 5.72590 5.79286 5.82915 5.89793 6.02157 6.11766 6.12915 6.23272 6.32300 6.37761 6.48400 6.66840 6.76104 6.96891 7.18003 7.58000 7.66857 7.82915 7.96569 8.38064 8.47043 9.22432 9.89162 10.33115 11.30652 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021918 B = 0.003989 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.157984 B = 7016.791278 C = 7788.151051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.124 4.124 3 H 0.117 0.883 4 C -0.150 4.150 5 C -0.190 4.190 6 H 0.122 0.878 7 C 0.538 3.462 8 O -0.544 6.544 9 N -0.717 5.717 10 C 0.124 3.876 11 C 0.056 3.944 12 H 0.047 0.953 13 C 0.166 3.834 14 N -0.586 5.586 15 C -0.254 4.254 16 H 0.065 0.935 17 C 0.004 3.996 18 N -0.906 5.906 19 Si 0.902 3.098 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.291 1.291 23 C 0.157 3.843 24 C -0.184 4.184 25 C 0.079 3.921 26 O -0.360 6.360 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.399 0.601 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.037 0.963 37 H 0.253 0.747 38 H 0.050 0.950 39 H 0.028 0.972 40 H 0.070 0.930 41 H 0.058 0.942 42 H 0.066 0.934 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.196 -4.832 10.018 18.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.142 4.142 3 H 0.135 0.865 4 C -0.188 4.188 5 C -0.211 4.211 6 H 0.139 0.861 7 C 0.324 3.676 8 O -0.422 6.422 9 N -0.367 5.367 10 C 0.001 3.999 11 C -0.004 4.004 12 H 0.065 0.935 13 C 0.040 3.960 14 N -0.307 5.307 15 C -0.384 4.384 16 H 0.083 0.917 17 C -0.194 4.194 18 N -0.550 5.550 19 Si 0.732 3.268 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.218 1.218 23 C 0.029 3.971 24 C -0.224 4.224 25 C 0.002 3.998 26 O -0.278 6.278 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.121 0.879 31 H 0.117 0.883 32 H 0.232 0.768 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.046 0.954 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -14.839 -3.747 9.980 18.271 hybrid contribution 0.276 -0.257 -0.867 0.945 sum -14.564 -4.004 9.114 17.641 Atomic orbital electron populations 1.21398 0.92346 1.02067 1.02200 1.22370 0.95099 0.95215 1.01556 0.86479 1.23093 1.03127 1.01528 0.91020 1.22319 0.97986 1.05152 0.95623 0.86053 1.19628 0.84596 0.84811 0.78577 1.90699 1.68612 1.21036 1.61846 1.45921 1.24907 1.13324 1.52555 1.21588 0.84511 0.97951 0.95885 1.23168 0.93256 0.94768 0.89203 0.93516 1.21628 0.87965 0.95588 0.90825 1.43588 1.68590 1.00362 1.18151 1.19217 1.23785 1.08029 0.87387 0.91724 1.25007 0.97516 1.00275 0.96620 1.70033 1.38780 1.22975 1.23254 0.86234 0.77603 0.79755 0.83231 1.20327 1.21503 1.21789 1.20667 0.92835 0.86506 0.97112 1.22301 0.99762 0.98886 1.01479 1.21307 0.98461 0.81901 0.98133 1.87454 1.62663 1.21554 1.56170 0.92436 0.91749 0.91930 0.87928 0.88276 0.76762 0.90492 0.90187 0.89792 0.94526 0.93640 0.93125 0.95380 0.91123 0.92365 0.91583 0.94790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 10.19 37.16 0.38 -0.55 16 2 C -0.12 -1.24 5.92 -90.62 -0.54 -1.78 16 3 H 0.12 1.40 7.67 -51.93 -0.40 1.00 16 4 C -0.15 -1.36 9.88 -26.73 -0.26 -1.63 16 5 C -0.19 -2.05 5.91 -91.77 -0.54 -2.59 16 6 H 0.12 1.07 8.14 -51.93 -0.42 0.64 16 7 C 0.54 8.07 7.61 -10.99 -0.08 7.99 16 8 O -0.54 -10.38 16.26 5.56 0.09 -10.29 16 9 N -0.72 -10.33 5.49 -60.29 -0.33 -10.66 16 10 C 0.12 2.17 5.24 -4.04 -0.02 2.15 16 11 C 0.06 1.04 2.35 -26.05 -0.06 0.98 16 12 H 0.05 0.78 7.20 -51.93 -0.37 0.41 16 13 C 0.17 3.90 4.50 -2.44 -0.01 3.89 16 14 N -0.59 -14.45 2.59 -171.48 -0.44 -14.89 16 15 C -0.25 -6.97 9.43 -15.06 -0.14 -7.12 16 16 H 0.07 1.76 7.88 -52.48 -0.41 1.35 16 17 C 0.00 0.11 4.88 -17.43 -0.09 0.03 16 18 N -0.91 -26.15 10.98 55.49 0.61 -25.54 16 19 Si 0.90 22.07 29.58 -169.99 -5.03 17.04 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 23 C 0.16 3.20 5.68 -4.14 -0.02 3.17 16 24 C -0.18 -3.16 6.03 -28.31 -0.17 -3.33 16 25 C 0.08 1.24 6.04 34.59 0.21 1.45 16 26 O -0.36 -6.81 9.77 -34.10 -0.33 -7.15 16 27 H 0.06 0.36 7.90 -51.92 -0.41 -0.05 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.10 0.70 8.05 -51.93 -0.42 0.28 16 31 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.40 4.76 8.46 -40.82 -0.35 4.41 16 33 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 35 H 0.08 2.24 6.24 -51.93 -0.32 1.92 16 36 H 0.04 0.91 8.02 -51.93 -0.42 0.50 16 37 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 38 H 0.05 1.04 7.97 -51.93 -0.41 0.63 16 39 H 0.03 0.53 8.10 -51.93 -0.42 0.11 16 40 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.03 0.47 7.27 -51.93 -0.38 0.10 16 LS Contribution 345.98 15.07 5.21 5.21 Total: -1.00 -31.90 345.98 -8.83 -40.73 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -7.25 Total: 2.87 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: -1.35 Total: 2.66 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: -0.17 Total: -51.09 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -0.24 Total: -17.44 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.04 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.90 -8.83 -40.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073736673.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.646 kcal (2) G-P(sol) polarization free energy of solvation -31.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds