Wall clock time and date at job start Tue Mar 31 2020 07:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.99733 * 2 1 4 4 C 1.54327 * 109.88369 * 121.09149 * 2 1 3 5 5 H 1.09003 * 110.72231 * 260.15558 * 4 2 1 6 6 N 1.46504 * 110.71583 * 23.24904 * 4 2 1 7 7 C 1.36940 * 119.99779 * 205.00306 * 6 4 2 8 8 H 1.08001 * 120.00319 * 359.97438 * 7 6 4 9 9 C 1.38817 * 119.99901 * 180.02562 * 7 6 4 10 10 N 1.31617 * 120.00177 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99992 * 179.97438 * 9 7 6 12 12 H 1.48508 * 109.47183 * 59.99877 * 11 9 7 13 13 H 1.48499 * 109.47269 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47405 * 299.99941 * 11 9 7 15 15 C 1.55150 * 102.94385 * 141.60648 * 4 2 1 16 16 C 1.55126 * 101.48876 * 324.34033 * 15 4 2 17 17 N 1.47014 * 109.88472 * 238.90150 * 2 1 3 18 18 C 1.34779 * 125.64951 * 61.60177 * 17 2 1 19 19 O 1.21279 * 119.99675 * 0.02562 * 18 17 2 20 20 C 1.50699 * 120.00248 * 180.02562 * 18 17 2 21 21 C 1.52998 * 109.47126 * 180.02562 * 20 18 17 22 22 H 1.08997 * 110.67587 * 303.48991 * 21 20 18 23 23 C 1.55000 * 110.61526 * 180.52398 * 21 20 18 24 24 C 1.54818 * 102.09030 * 204.47771 * 23 21 20 25 25 C 1.54097 * 104.18808 * 20.87976 * 24 23 21 26 26 O 1.43745 * 107.29442 * 2.03270 * 25 24 23 27 27 H 1.08995 * 109.47196 * 179.64314 * 1 2 3 28 28 H 1.09003 * 109.47166 * 299.64641 * 1 2 3 29 29 H 1.08996 * 109.47021 * 59.64317 * 1 2 3 30 30 H 0.97002 * 120.00312 * 25.00055 * 6 4 2 31 31 H 0.96992 * 120.00257 * 180.02562 * 10 9 7 32 32 H 1.09008 * 110.99935 * 82.57641 * 15 4 2 33 33 H 1.08997 * 111.00913 * 206.38834 * 15 4 2 34 34 H 1.09003 * 110.49567 * 278.44832 * 16 15 4 35 35 H 1.08996 * 110.34728 * 156.05814 * 16 15 4 36 36 H 1.09001 * 109.47194 * 60.00103 * 20 18 17 37 37 H 1.09000 * 109.47202 * 300.00506 * 20 18 17 38 38 H 1.08996 * 110.90766 * 86.28222 * 23 21 20 39 39 H 1.09000 * 110.90626 * 322.67179 * 23 21 20 40 40 H 1.09004 * 110.48564 * 262.20686 * 24 23 21 41 41 H 1.08997 * 110.48807 * 139.56009 * 24 23 21 42 42 H 1.08998 * 109.88273 * 242.60534 * 25 24 23 43 43 H 1.08998 * 110.00322 * 121.52715 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7494 1.2428 5 1 2.3499 -0.0459 2.0213 6 7 1.0471 -1.6854 1.7475 7 6 1.0605 -2.0616 3.0642 8 1 1.8142 -1.6685 3.7304 9 6 0.1060 -2.9488 3.5423 10 7 -0.8122 -3.4283 2.7303 11 14 0.1247 -3.4625 5.3382 12 1 -0.0382 -2.2626 6.1979 13 1 -0.9904 -4.4092 5.5939 14 1 1.4173 -4.1234 5.6506 15 6 3.2875 -1.5142 0.6925 16 6 2.8099 -1.8825 -0.7367 17 7 2.0300 -0.7141 -1.1838 18 6 1.8074 -0.3622 -2.4657 19 8 1.1435 0.6209 -2.7180 20 6 2.3833 -1.1902 -3.5853 21 6 1.9852 -0.5775 -4.9296 22 1 0.9014 -0.4930 -5.0082 23 6 2.5538 -1.4173 -6.1018 24 6 2.6216 -0.3749 -7.2444 25 6 2.6227 0.9835 -6.5169 26 8 2.6099 0.7123 -5.1053 27 1 -0.3633 -1.0276 -0.0064 28 1 -0.3634 0.5083 0.8932 29 1 -0.3633 0.5193 -0.8867 30 1 0.3704 -2.0387 1.1490 31 1 -1.4794 -4.0479 3.0644 32 1 4.1654 -0.8688 0.6605 33 1 3.4855 -2.4106 1.2802 34 1 2.1801 -2.7718 -0.7113 35 1 3.6655 -2.0413 -1.3930 36 1 1.9971 -2.2075 -3.5207 37 1 3.4699 -1.2082 -3.5021 38 1 1.8784 -2.2331 -6.3592 39 1 3.5470 -1.7971 -5.8623 40 1 1.7484 -0.4605 -7.8913 41 1 3.5382 -0.4997 -7.8208 42 1 1.7351 1.5527 -6.7930 43 1 3.5192 1.5457 -6.7781 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074544909.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:51 Heat of formation + Delta-G solvation = -66.571000 kcal Electronic energy + Delta-G solvation = -23000.345815 eV Core-core repulsion = 19659.791870 eV Total energy + Delta-G solvation = -3340.553945 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.11007 -39.18657 -37.25477 -33.93747 -32.54569 -31.98970 -31.22382 -30.66193 -28.84846 -26.59959 -25.15803 -23.56144 -22.73553 -21.76071 -21.24884 -19.58698 -18.36986 -17.51011 -16.94001 -16.40225 -16.08112 -15.75890 -15.25668 -14.70479 -14.49631 -13.86719 -13.78806 -13.62004 -13.19213 -12.86319 -12.80090 -12.33907 -12.18416 -12.12211 -11.91936 -11.64931 -11.41715 -11.29484 -11.20388 -10.97431 -10.90373 -10.85672 -10.72946 -10.59492 -10.22051 -10.03792 -9.67709 -9.60435 -9.32346 -8.94978 -8.19946 -7.02307 -5.81538 -3.10856 3.00733 3.32928 3.41324 3.46386 3.46972 3.76596 4.35323 4.49450 4.55015 4.71733 4.81143 4.96244 5.06543 5.12293 5.21977 5.32088 5.38641 5.47843 5.51526 5.55269 5.59303 5.63759 5.68869 5.70328 5.79802 5.81603 5.91361 5.96005 6.03748 6.18893 6.39880 6.46511 6.56432 6.66848 6.78458 6.87163 6.94397 7.07367 7.66145 7.96655 8.36932 8.56590 9.48447 10.04170 10.39405 11.40705 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.038704 B = 0.003433 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.268753 B = 8155.159389 C = 8203.666180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.127 3.873 3 H 0.068 0.932 4 C 0.171 3.829 5 H 0.069 0.931 6 N -0.714 5.714 7 C -0.244 4.244 8 H 0.071 0.929 9 C -0.010 4.010 10 N -0.931 5.931 11 Si 0.908 3.092 12 H -0.286 1.286 13 H -0.292 1.292 14 H -0.286 1.286 15 C -0.159 4.159 16 C 0.105 3.895 17 N -0.611 5.611 18 C 0.527 3.473 19 O -0.536 6.536 20 C -0.132 4.132 21 C 0.095 3.905 22 H 0.077 0.923 23 C -0.152 4.152 24 C -0.156 4.156 25 C 0.045 3.955 26 O -0.360 6.360 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.388 0.612 31 H 0.256 0.744 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.056 0.944 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.853 3.191 -17.115 19.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.023 3.977 3 H 0.086 0.914 4 C 0.059 3.941 5 H 0.087 0.913 6 N -0.356 5.356 7 C -0.375 4.375 8 H 0.089 0.911 9 C -0.206 4.206 10 N -0.579 5.579 11 Si 0.739 3.261 12 H -0.212 1.212 13 H -0.218 1.218 14 H -0.213 1.213 15 C -0.201 4.201 16 C -0.018 4.018 17 N -0.346 5.346 18 C 0.315 3.685 19 O -0.413 6.413 20 C -0.172 4.172 21 C 0.037 3.963 22 H 0.095 0.905 23 C -0.190 4.190 24 C -0.193 4.193 25 C -0.032 4.032 26 O -0.279 6.279 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.225 0.775 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.105 0.895 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.123 0.877 37 H 0.116 0.884 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.074 0.926 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.549 3.838 -16.968 19.383 hybrid contribution -0.235 -0.750 0.606 0.992 sum 8.314 3.087 -16.362 18.611 Atomic orbital electron populations 1.21906 0.94376 1.02805 1.01525 1.21972 0.95341 0.95599 0.84806 0.91365 1.21201 0.89095 0.91604 0.92189 0.91295 1.42554 1.32707 1.51453 1.08863 1.19207 1.10819 1.21234 0.86210 0.91098 1.24740 0.97922 1.00096 0.97886 1.69646 1.18410 1.35545 1.34301 0.86267 0.76931 0.78054 0.84885 1.21249 1.21757 1.21274 1.23541 0.99247 1.02279 0.95005 1.22327 0.94427 0.88780 0.96245 1.48674 1.52471 1.28435 1.05001 1.20028 0.80715 0.85440 0.82301 1.90687 1.39922 1.27507 1.83166 1.21724 1.03131 1.00014 0.92324 1.22837 0.97647 0.82919 0.92928 0.90499 1.23209 1.02420 0.98438 0.94941 1.22928 1.02879 0.95051 0.98483 1.23107 1.01651 0.96481 0.81961 1.89000 1.80605 1.36167 1.22149 0.91660 0.91647 0.92804 0.77542 0.93390 0.92060 0.89521 0.91114 0.91859 0.87692 0.88421 0.90014 0.90309 0.90738 0.90596 0.92575 0.90178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 8.51 37.16 0.32 -2.59 16 2 C 0.13 2.31 3.42 -66.96 -0.23 2.08 16 3 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 4 C 0.17 3.28 3.48 -66.10 -0.23 3.05 16 5 H 0.07 1.32 8.09 -51.93 -0.42 0.90 16 6 N -0.71 -16.92 4.54 -51.65 -0.23 -17.15 16 7 C -0.24 -6.44 9.96 -15.06 -0.15 -6.59 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 9 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 10 N -0.93 -27.28 13.06 55.49 0.72 -26.55 16 11 Si 0.91 21.79 29.55 -169.99 -5.02 16.77 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 14 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 15 C -0.16 -2.58 6.78 -24.47 -0.17 -2.75 16 16 C 0.10 1.56 6.68 -2.41 -0.02 1.55 16 17 N -0.61 -10.18 3.06 -162.88 -0.50 -10.68 16 18 C 0.53 8.81 7.55 -10.98 -0.08 8.73 16 19 O -0.54 -10.81 14.60 -5.79 -0.08 -10.90 16 20 C -0.13 -1.61 4.48 -27.88 -0.12 -1.73 16 21 C 0.09 1.14 2.79 -25.68 -0.07 1.07 16 22 H 0.08 1.01 8.04 -51.93 -0.42 0.60 16 23 C -0.15 -1.29 6.59 -24.72 -0.16 -1.45 16 24 C -0.16 -1.21 7.01 -25.20 -0.18 -1.39 16 25 C 0.05 0.46 7.70 37.73 0.29 0.75 16 26 O -0.36 -5.13 10.62 -46.58 -0.49 -5.62 16 27 H 0.06 1.40 6.20 -51.93 -0.32 1.08 16 28 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.05 1.06 6.88 -51.93 -0.36 0.71 16 30 H 0.39 9.89 5.67 -40.82 -0.23 9.66 16 31 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 33 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.06 0.75 7.48 -51.93 -0.39 0.36 16 36 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.10 1.06 7.85 -51.93 -0.41 0.65 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.61 8.06 -51.93 -0.42 0.19 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 341.18 15.07 5.14 5.14 Total: -1.00 -31.74 341.18 -8.53 -40.27 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -7.16 Total: 8.37 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -0.90 Total: 0.35 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: -0.01 Total: -54.38 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.58 Total: -16.52 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.74 -8.53 -40.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074544909.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.306 kcal (2) G-P(sol) polarization free energy of solvation -31.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds