Wall clock time and date at job start Tue Mar 31 2020 07:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.00045 * 2 1 4 4 C 1.54329 * 109.88094 * 121.09307 * 2 1 3 5 5 H 1.09001 * 110.72305 * 215.76482 * 4 2 1 6 6 N 1.46498 * 110.71932 * 338.86179 * 4 2 1 7 7 C 1.36943 * 119.99752 * 202.28086 * 6 4 2 8 8 H 1.08002 * 119.99793 * 0.27665 * 7 6 4 9 9 C 1.38811 * 120.00012 * 180.27737 * 7 6 4 10 10 N 1.31624 * 119.99698 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00072 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47159 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.47290 * 120.00044 * 11 9 7 14 14 H 1.48503 * 109.47163 * 240.00049 * 11 9 7 15 15 C 1.55161 * 103.10041 * 97.31712 * 4 2 1 16 16 C 1.55120 * 101.48441 * 35.28070 * 15 4 2 17 17 N 1.47018 * 109.88338 * 238.90509 * 2 1 3 18 18 C 1.34774 * 125.65167 * 59.48503 * 17 2 1 19 19 O 1.21277 * 119.99727 * 0.02562 * 18 17 2 20 20 C 1.50695 * 119.99815 * 179.97438 * 18 17 2 21 21 H 1.08998 * 109.52205 * 60.00517 * 20 18 17 22 22 C 1.53188 * 109.51914 * 180.12766 * 20 18 17 23 23 C 1.53186 * 109.03025 * 176.82560 * 22 20 18 24 24 C 1.53087 * 109.21559 * 303.11749 * 23 22 20 25 25 O 1.42899 * 109.41727 * 57.57372 * 24 23 22 26 26 C 1.42900 * 114.09986 * 298.84181 * 25 24 23 27 27 H 1.09003 * 109.47215 * 298.90221 * 1 2 3 28 28 H 1.09004 * 109.47147 * 58.90628 * 1 2 3 29 29 H 1.09003 * 109.46962 * 178.90805 * 1 2 3 30 30 H 0.97001 * 120.00384 * 22.56442 * 6 4 2 31 31 H 0.96999 * 119.99739 * 180.02562 * 10 9 7 32 32 H 1.08995 * 111.00154 * 153.48636 * 15 4 2 33 33 H 1.09003 * 110.99787 * 277.33768 * 15 4 2 34 34 H 1.09003 * 110.41811 * 204.29402 * 16 15 4 35 35 H 1.08998 * 110.20632 * 82.04700 * 16 15 4 36 36 H 1.08998 * 109.53783 * 296.75184 * 22 20 18 37 37 H 1.08998 * 109.53911 * 57.02282 * 22 20 18 38 38 H 1.08998 * 109.52495 * 183.17438 * 23 22 20 39 39 H 1.09004 * 109.52286 * 63.05339 * 23 22 20 40 40 H 1.09003 * 109.47601 * 297.59323 * 24 23 22 41 41 H 1.09002 * 109.48475 * 177.56255 * 24 23 22 42 42 H 1.09002 * 109.48493 * 301.17906 * 26 25 24 43 43 H 1.08996 * 109.48463 * 181.13830 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7495 1.2428 5 1 2.9639 -0.2813 1.6202 6 7 1.0292 -0.8025 2.2875 7 6 1.3920 -0.9945 3.5940 8 1 2.4345 -1.1023 3.8547 9 6 0.4198 -1.0505 4.5832 10 7 -0.8507 -0.9196 4.2654 11 14 0.9147 -1.3116 6.3654 12 1 2.3923 -1.4279 6.4569 13 1 0.4582 -0.1570 7.1802 14 1 0.2871 -2.5568 6.8761 15 6 2.3554 -2.1701 0.6959 16 6 2.8569 -1.8498 -0.7367 17 7 2.0300 -0.7140 -1.1839 18 6 1.7743 -0.3853 -2.4657 19 8 1.0770 0.5744 -2.7180 20 6 2.3556 -1.2096 -3.5853 21 1 2.0025 -2.2374 -3.5022 22 6 1.9178 -0.6251 -4.9318 23 6 2.5784 -1.4223 -6.0609 24 6 4.0980 -1.3896 -5.8784 25 8 4.4337 -1.9192 -4.5943 26 6 3.8839 -1.1851 -3.4985 27 1 -0.3634 0.4967 0.8997 28 1 -0.3634 0.5307 -0.8800 29 1 -0.3633 -1.0275 -0.0196 30 1 0.0929 -0.7058 2.0534 31 1 -1.5301 -0.9583 4.9567 32 1 3.1316 -2.6591 1.2844 33 1 1.4501 -2.7764 0.6652 34 1 2.7089 -2.7080 -1.3921 35 1 3.9092 -1.5667 -0.7127 36 1 0.8337 -0.6919 -5.0230 37 1 2.2268 0.4183 -4.9942 38 1 2.3172 -0.9783 -7.0215 39 1 2.2299 -2.4546 -6.0301 40 1 4.4507 -0.3608 -5.9508 41 1 4.5704 -1.9915 -6.6547 42 1 4.2338 -0.1536 -3.5398 43 1 4.2019 -1.6397 -2.5603 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074557331.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:15 Heat of formation + Delta-G solvation = -68.251933 kcal Electronic energy + Delta-G solvation = -23265.233330 eV Core-core repulsion = 19924.606494 eV Total energy + Delta-G solvation = -3340.626836 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.59117 -39.02219 -37.44664 -34.27634 -33.77027 -32.22741 -31.08214 -30.65656 -28.78423 -25.45144 -25.14040 -24.70807 -23.41741 -22.47744 -20.79072 -19.57416 -18.67967 -17.56622 -16.93104 -16.54317 -16.30836 -15.54008 -15.43391 -15.02409 -14.54827 -14.13152 -13.95560 -13.66637 -13.38891 -13.28968 -12.93932 -12.72303 -12.46083 -12.10955 -11.87430 -11.69364 -11.56745 -11.34567 -11.25833 -11.12310 -10.97883 -10.84074 -10.65015 -10.43558 -10.21999 -10.00165 -9.86332 -9.72460 -9.43683 -8.97849 -8.42978 -7.04890 -5.84014 -3.13957 2.71389 3.07971 3.39517 3.45361 3.47602 3.60925 4.37697 4.51687 4.53222 4.62403 4.66203 4.81179 4.94366 5.00441 5.13444 5.22918 5.29977 5.37642 5.42632 5.48526 5.53579 5.57210 5.60747 5.62087 5.72259 5.80143 5.90871 6.01363 6.06920 6.09830 6.20464 6.29595 6.53838 6.54263 6.68726 6.80709 6.87597 6.96451 7.64645 7.73305 8.29871 8.34733 9.46210 10.01109 10.35957 11.38492 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.040302 B = 0.003630 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.583404 B = 7710.878131 C = 8176.187826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.127 3.873 3 H 0.071 0.929 4 C 0.173 3.827 5 H 0.064 0.936 6 N -0.717 5.717 7 C -0.245 4.245 8 H 0.072 0.928 9 C -0.011 4.011 10 N -0.931 5.931 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 C -0.154 4.154 16 C 0.093 3.907 17 N -0.608 5.608 18 C 0.532 3.468 19 O -0.540 6.540 20 C -0.139 4.139 21 H 0.104 0.896 22 C -0.102 4.102 23 C -0.156 4.156 24 C 0.056 3.944 25 O -0.377 6.377 26 C 0.066 3.934 27 H 0.080 0.920 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.391 0.609 31 H 0.256 0.744 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.051 0.949 41 H 0.094 0.906 42 H 0.055 0.945 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.343 -2.167 -18.737 21.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.024 3.976 3 H 0.089 0.911 4 C 0.061 3.939 5 H 0.082 0.918 6 N -0.361 5.361 7 C -0.376 4.376 8 H 0.090 0.910 9 C -0.207 4.207 10 N -0.578 5.578 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.218 1.218 15 C -0.195 4.195 16 C -0.030 4.030 17 N -0.342 5.342 18 C 0.320 3.680 19 O -0.417 6.417 20 C -0.161 4.161 21 H 0.122 0.878 22 C -0.139 4.139 23 C -0.194 4.194 24 C -0.020 4.020 25 O -0.295 6.295 26 C -0.011 4.011 27 H 0.098 0.902 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.229 0.771 31 H 0.066 0.934 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.069 0.931 41 H 0.112 0.888 42 H 0.074 0.926 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 9.125 -1.794 -18.727 20.909 hybrid contribution -0.331 -0.052 0.942 1.000 sum 8.794 -1.847 -17.785 19.926 Atomic orbital electron populations 1.22000 0.94566 1.02352 1.02717 1.21861 0.95430 0.95776 0.84551 0.91083 1.21189 0.93237 0.92035 0.87414 0.91776 1.42686 1.04793 1.86232 1.02349 1.19294 0.92782 1.41949 0.83538 0.90977 1.24763 0.95253 1.02537 0.98162 1.69672 0.99063 1.56728 1.32384 0.86102 0.77546 0.77353 0.85053 1.20492 1.21831 1.21842 1.23605 1.01753 1.01356 0.92790 1.22535 0.94445 0.88553 0.97496 1.48644 1.50073 1.30398 1.05045 1.19983 0.80884 0.84913 0.82213 1.90677 1.38879 1.28938 1.83245 1.21952 0.97948 1.01385 0.94810 0.87846 1.21402 1.01404 0.99688 0.91455 1.22227 0.96304 1.01588 0.99262 1.22635 0.94717 0.99125 0.85545 1.87964 1.73182 1.54395 1.14007 1.22700 0.90356 0.97234 0.90840 0.90159 0.92207 0.92604 0.77102 0.93411 0.90448 0.90663 0.91093 0.91441 0.90640 0.90943 0.90503 0.90920 0.93068 0.88770 0.92636 0.87631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 7.94 37.16 0.29 -2.69 16 2 C 0.13 2.24 3.48 -66.95 -0.23 2.00 16 3 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 4 C 0.17 3.27 3.46 -66.09 -0.23 3.04 16 5 H 0.06 1.20 8.11 -51.93 -0.42 0.78 16 6 N -0.72 -17.16 4.98 -51.65 -0.26 -17.42 16 7 C -0.24 -6.51 9.97 -15.06 -0.15 -6.66 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 10 N -0.93 -27.43 13.06 55.49 0.72 -26.71 16 11 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 14 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 15 C -0.15 -2.44 6.79 -24.47 -0.17 -2.61 16 16 C 0.09 1.17 5.14 -2.41 -0.01 1.16 16 17 N -0.61 -9.11 3.08 -162.88 -0.50 -9.61 16 18 C 0.53 8.00 7.00 -10.99 -0.08 7.93 16 19 O -0.54 -9.91 14.87 5.56 0.08 -9.83 16 20 C -0.14 -1.60 2.07 -91.63 -0.19 -1.78 16 21 H 0.10 1.12 7.85 -51.93 -0.41 0.71 16 22 C -0.10 -1.07 4.63 -26.54 -0.12 -1.20 16 23 C -0.16 -1.26 6.13 -26.59 -0.16 -1.42 16 24 C 0.06 0.46 6.84 37.20 0.25 0.72 16 25 O -0.38 -3.99 10.76 -35.23 -0.38 -4.37 16 26 C 0.07 0.68 5.91 37.21 0.22 0.90 16 27 H 0.08 1.65 6.72 -51.93 -0.35 1.30 16 28 H 0.06 1.13 6.77 -51.93 -0.35 0.78 16 29 H 0.05 1.07 8.06 -51.93 -0.42 0.66 16 30 H 0.39 9.93 4.99 -40.82 -0.20 9.73 16 31 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.07 0.77 7.34 -51.93 -0.38 0.39 16 35 H 0.07 0.73 7.13 -51.93 -0.37 0.36 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 0.82 8.03 -51.93 -0.42 0.40 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.11 1.02 5.10 -51.93 -0.26 0.76 16 LS Contribution 331.99 15.07 5.00 5.00 Total: -1.00 -30.85 331.99 -7.96 -38.81 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -6.93 Total: 8.35 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -0.67 Total: -1.01 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: -0.03 Total: -53.74 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -0.30 Total: -14.20 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.85 -7.96 -38.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074557331.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.445 kcal (2) G-P(sol) polarization free energy of solvation -30.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds