Wall clock time and date at job start Tue Mar 31 2020 07:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.87652 * 2 1 4 4 C 1.54324 * 109.88511 * 121.18103 * 2 1 3 5 5 H 1.09005 * 110.71819 * 259.97036 * 4 2 1 6 6 N 1.46502 * 110.71738 * 23.06239 * 4 2 1 7 7 C 1.36935 * 119.99864 * 204.99892 * 6 4 2 8 8 H 1.08001 * 120.00126 * 0.02562 * 7 6 4 9 9 C 1.38818 * 120.00310 * 180.02562 * 7 6 4 10 10 N 1.31621 * 119.99676 * 359.97438 * 9 7 6 11 11 Si 1.86791 * 120.00329 * 180.02562 * 9 7 6 12 12 H 1.48509 * 109.47373 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.47286 * 119.99542 * 11 9 7 14 14 H 1.48498 * 109.47143 * 239.99795 * 11 9 7 15 15 C 1.55155 * 102.94508 * 141.60491 * 4 2 1 16 16 C 1.55130 * 101.48413 * 324.33202 * 15 4 2 17 17 N 1.47022 * 109.87724 * 238.98447 * 2 1 3 18 18 C 1.34774 * 125.64794 * 61.61132 * 17 2 1 19 19 O 1.21281 * 120.00457 * 359.97438 * 18 17 2 20 20 C 1.50704 * 119.99951 * 179.97438 * 18 17 2 21 21 H 1.08992 * 109.57649 * 299.83549 * 20 18 17 22 22 C 1.53207 * 109.53527 * 179.67467 * 20 18 17 23 23 C 1.53178 * 109.03992 * 183.11713 * 22 20 18 24 24 C 1.53097 * 109.16320 * 56.98185 * 23 22 20 25 25 O 1.42898 * 109.41490 * 302.39102 * 24 23 22 26 26 C 1.42905 * 114.09851 * 61.15689 * 25 24 23 27 27 H 1.08998 * 109.47426 * 179.56721 * 1 2 3 28 28 H 1.09006 * 109.46695 * 299.55604 * 1 2 3 29 29 H 1.08994 * 109.47578 * 59.55827 * 1 2 3 30 30 H 0.96997 * 120.00182 * 25.00764 * 6 4 2 31 31 H 0.96988 * 120.00003 * 180.02562 * 10 9 7 32 32 H 1.08998 * 111.00163 * 82.57268 * 15 4 2 33 33 H 1.08997 * 111.00393 * 206.42043 * 15 4 2 34 34 H 1.08994 * 110.49578 * 278.44929 * 16 15 4 35 35 H 1.09008 * 110.34064 * 156.05780 * 16 15 4 36 36 H 1.09004 * 109.54239 * 63.25237 * 22 20 18 37 37 H 1.08996 * 109.54460 * 302.98694 * 22 20 18 38 38 H 1.09003 * 109.52669 * 297.07816 * 23 22 20 39 39 H 1.08997 * 109.52447 * 176.88713 * 23 22 20 40 40 H 1.08995 * 109.47859 * 182.40411 * 24 23 22 41 41 H 1.09000 * 109.48591 * 62.37596 * 24 23 22 42 42 H 1.09002 * 109.48053 * 58.82596 * 26 25 24 43 43 H 1.08999 * 109.48097 * 178.85162 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0549 -0.7514 1.2416 5 1 2.3531 -0.0489 2.0200 6 7 1.0456 -1.6850 1.7475 7 6 1.0602 -2.0618 3.0639 8 1 1.8155 -1.6704 3.7293 9 6 0.1042 -2.9468 3.5433 10 7 -0.8166 -3.4234 2.7325 11 14 0.1237 -3.4602 5.3391 12 1 1.2511 -2.7882 6.0340 13 1 -1.1574 -3.0684 5.9800 14 1 0.2932 -4.9326 5.4312 15 6 3.2876 -1.5154 0.6901 16 6 2.8097 -1.8816 -0.7396 17 7 2.0299 -0.7124 -1.1850 18 6 1.8073 -0.3585 -2.4662 19 8 1.1428 0.6245 -2.7172 20 6 2.3840 -1.1844 -3.5871 21 1 3.4708 -1.2005 -3.5071 22 6 1.9789 -0.5752 -4.9332 23 6 2.5045 -1.4657 -6.0632 24 6 1.9592 -2.8845 -5.8800 25 8 2.3458 -3.3799 -4.5967 26 6 1.8433 -2.6140 -3.4999 27 1 -0.3634 -1.0276 -0.0078 28 1 -0.3633 0.5070 0.8940 29 1 -0.3634 0.5206 -0.8859 30 1 0.3671 -2.0363 1.1500 31 1 -1.4848 -4.0414 3.0675 32 1 4.1654 -0.8699 0.6590 33 1 3.4852 -2.4129 1.2761 34 1 2.1800 -2.7708 -0.7155 35 1 3.6654 -2.0393 -1.3963 36 1 2.4079 0.4226 -5.0257 37 1 0.8923 -0.5133 -4.9932 38 1 3.5939 -1.4875 -6.0331 39 1 2.1736 -1.0695 -7.0232 40 1 2.3642 -3.5327 -6.6571 41 1 0.8716 -2.8679 -5.9507 42 1 0.7542 -2.5938 -3.5394 43 1 2.1647 -3.0675 -2.5623 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074557332.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:19 Heat of formation + Delta-G solvation = -69.436602 kcal Electronic energy + Delta-G solvation = -23571.061048 eV Core-core repulsion = 20230.382841 eV Total energy + Delta-G solvation = -3340.678207 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.50779 -38.93496 -37.39611 -34.06725 -33.67751 -32.15997 -31.02899 -30.65669 -28.74099 -25.44572 -25.10207 -24.47240 -23.56020 -22.32370 -20.69187 -19.61464 -18.54637 -17.56114 -16.74188 -16.50253 -16.18717 -15.87478 -15.12579 -14.82670 -14.44710 -13.94162 -13.83477 -13.67458 -13.35687 -13.19066 -12.83882 -12.76953 -12.44678 -12.26636 -11.79157 -11.63937 -11.34593 -11.25655 -11.10930 -10.99178 -10.89778 -10.78117 -10.66408 -10.47425 -10.23319 -10.04628 -9.76055 -9.64537 -9.37920 -8.98935 -8.33526 -7.05633 -5.84506 -3.14069 2.78720 3.19325 3.39095 3.45250 3.47317 3.73712 4.47467 4.52641 4.60658 4.70561 4.76795 4.90267 5.02319 5.08335 5.23088 5.29097 5.40652 5.48729 5.55159 5.58043 5.58219 5.63146 5.69660 5.71956 5.80482 5.83392 5.95311 6.00472 6.08918 6.14799 6.32347 6.40183 6.49656 6.60141 6.71304 6.84738 6.99293 7.01302 7.64723 7.82079 8.33600 8.37922 9.45662 10.00477 10.35506 11.37832 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026093 B = 0.004280 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.844315 B = 6541.211336 C = 6928.883279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.125 3.875 3 H 0.070 0.930 4 C 0.172 3.828 5 H 0.070 0.930 6 N -0.713 5.713 7 C -0.244 4.244 8 H 0.072 0.928 9 C -0.009 4.009 10 N -0.930 5.930 11 Si 0.907 3.093 12 H -0.280 1.280 13 H -0.292 1.292 14 H -0.292 1.292 15 C -0.159 4.159 16 C 0.100 3.900 17 N -0.606 5.606 18 C 0.532 3.468 19 O -0.544 6.544 20 C -0.138 4.138 21 H 0.102 0.898 22 C -0.101 4.101 23 C -0.155 4.155 24 C 0.056 3.944 25 O -0.376 6.376 26 C 0.064 3.936 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.388 0.612 31 H 0.256 0.744 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.094 0.906 41 H 0.051 0.949 42 H 0.057 0.943 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.161 3.067 -14.819 17.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.022 3.978 3 H 0.088 0.912 4 C 0.059 3.941 5 H 0.088 0.912 6 N -0.355 5.355 7 C -0.375 4.375 8 H 0.090 0.910 9 C -0.205 4.205 10 N -0.578 5.578 11 Si 0.738 3.262 12 H -0.205 1.205 13 H -0.219 1.219 14 H -0.219 1.219 15 C -0.201 4.201 16 C -0.022 4.022 17 N -0.340 5.340 18 C 0.320 3.680 19 O -0.422 6.422 20 C -0.160 4.160 21 H 0.120 0.880 22 C -0.139 4.139 23 C -0.193 4.193 24 C -0.021 4.021 25 O -0.295 6.295 26 C -0.013 4.013 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.224 0.776 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.112 0.888 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 7.903 3.412 -14.802 17.123 hybrid contribution -0.338 -0.278 0.786 0.899 sum 7.565 3.135 -14.016 16.233 Atomic orbital electron populations 1.21916 0.94256 1.02916 1.01593 1.22025 0.95447 0.95634 0.84728 0.91230 1.21191 0.89093 0.91660 0.92115 0.91214 1.42556 1.32389 1.51622 1.08956 1.19290 1.10725 1.21319 0.86181 0.90964 1.24739 0.97856 1.00047 0.97904 1.69664 1.18255 1.35674 1.34206 0.86129 0.77263 0.78039 0.84783 1.20519 1.21875 1.21873 1.23563 0.99276 1.02421 0.94821 1.22476 0.94560 0.88689 0.96504 1.48693 1.51992 1.28342 1.04973 1.19973 0.80495 0.85226 0.82307 1.90664 1.40149 1.28023 1.83363 1.21942 1.02589 0.96698 0.94750 0.88017 1.21402 1.02061 0.98911 0.91546 1.22225 1.01787 0.96102 0.99188 1.22632 0.99076 0.94710 0.85700 1.87970 1.75291 1.52273 1.13938 1.22730 0.98438 0.89269 0.90837 0.91581 0.91502 0.92831 0.77553 0.93448 0.91962 0.89354 0.90765 0.91481 0.90808 0.90913 0.91011 0.90577 0.88836 0.93034 0.92464 0.87443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 8.51 37.16 0.32 -2.49 16 2 C 0.13 2.18 3.43 -66.95 -0.23 1.95 16 3 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 4 C 0.17 3.17 3.47 -66.10 -0.23 2.95 16 5 H 0.07 1.29 8.09 -51.93 -0.42 0.87 16 6 N -0.71 -16.50 4.56 -51.65 -0.24 -16.74 16 7 C -0.24 -6.35 9.96 -15.06 -0.15 -6.50 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 10 N -0.93 -27.01 13.06 55.49 0.72 -26.29 16 11 Si 0.91 21.61 29.55 -169.99 -5.02 16.58 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 14 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 15 C -0.16 -2.49 6.79 -24.46 -0.17 -2.66 16 16 C 0.10 1.45 5.12 -2.41 -0.01 1.44 16 17 N -0.61 -9.60 3.06 -162.88 -0.50 -10.09 16 18 C 0.53 8.42 7.01 -10.98 -0.08 8.35 16 19 O -0.54 -10.24 15.01 5.56 0.08 -10.15 16 20 C -0.14 -1.73 2.07 -91.62 -0.19 -1.92 16 21 H 0.10 1.16 7.86 -51.93 -0.41 0.75 16 22 C -0.10 -1.15 4.62 -26.53 -0.12 -1.27 16 23 C -0.16 -1.38 6.14 -26.59 -0.16 -1.55 16 24 C 0.06 0.53 6.84 37.21 0.25 0.79 16 25 O -0.38 -4.66 10.77 -35.23 -0.38 -5.04 16 26 C 0.06 0.81 5.90 37.20 0.22 1.03 16 27 H 0.07 1.38 6.20 -51.93 -0.32 1.06 16 28 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 29 H 0.05 1.01 6.88 -51.93 -0.36 0.66 16 30 H 0.39 9.68 5.66 -40.82 -0.23 9.45 16 31 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 34 H 0.07 1.17 7.14 -51.93 -0.37 0.79 16 35 H 0.07 0.80 7.32 -51.92 -0.38 0.42 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 0.90 8.03 -51.93 -0.42 0.49 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.11 1.36 5.06 -51.93 -0.26 1.10 16 LS Contribution 332.48 15.07 5.01 5.01 Total: -1.00 -29.95 332.48 -7.91 -37.86 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -6.94 Total: 9.10 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -0.65 Total: -0.25 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: -0.01 Total: -53.12 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.30 Total: -15.19 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.95 -7.91 -37.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074557332.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.579 kcal (2) G-P(sol) polarization free energy of solvation -29.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds