Wall clock time and date at job start Tue Mar 31 2020 07:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.99897 * 2 1 4 4 C 1.54324 * 109.88242 * 121.09040 * 2 1 3 5 5 H 1.09001 * 110.72425 * 259.97690 * 4 2 1 6 6 N 1.46502 * 110.72055 * 23.24364 * 4 2 1 7 7 C 1.36935 * 120.00282 * 202.69046 * 6 4 2 8 8 H 1.08001 * 119.99813 * 0.02562 * 7 6 4 9 9 C 1.38818 * 120.00219 * 180.02562 * 7 6 4 10 10 N 1.31618 * 119.99459 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99969 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47340 * 90.00180 * 11 9 7 13 13 H 1.48503 * 109.46542 * 210.00276 * 11 9 7 14 14 H 1.48499 * 109.47112 * 329.99846 * 11 9 7 15 15 C 1.55156 * 102.94433 * 141.61092 * 4 2 1 16 16 C 1.54908 * 101.57881 * 324.49768 * 15 4 2 17 17 N 1.47022 * 109.88354 * 238.89811 * 2 1 3 18 18 C 1.34773 * 125.64622 * 61.59494 * 17 2 1 19 19 O 1.21282 * 120.00242 * 0.03442 * 18 17 2 20 20 C 1.50698 * 119.99972 * 180.02562 * 18 17 2 21 21 C 1.52999 * 109.47583 * 180.02562 * 20 18 17 22 22 H 1.09000 * 110.43415 * 303.91299 * 21 20 18 23 23 C 1.54805 * 110.49003 * 181.22454 * 21 20 18 24 24 C 1.55004 * 102.09001 * 220.44345 * 23 21 20 25 25 O 1.44380 * 103.48917 * 37.02178 * 24 23 21 26 26 C 1.43746 * 106.97744 * 319.94018 * 25 24 23 27 27 H 1.09005 * 109.47092 * 291.88302 * 1 2 3 28 28 H 1.08995 * 109.47174 * 51.88358 * 1 2 3 29 29 H 1.09001 * 109.46997 * 171.88312 * 1 2 3 30 30 H 0.97003 * 119.99675 * 22.69968 * 6 4 2 31 31 H 0.97002 * 119.99215 * 180.02562 * 10 9 7 32 32 H 1.08994 * 111.00337 * 82.57111 * 15 4 2 33 33 H 1.08997 * 111.00152 * 206.38685 * 15 4 2 34 34 H 1.09000 * 110.36496 * 155.84412 * 16 15 4 35 35 H 1.08994 * 110.36910 * 278.05736 * 16 15 4 36 36 H 1.09000 * 109.47238 * 300.00617 * 20 18 17 37 37 H 1.09007 * 109.47135 * 60.00130 * 20 18 17 38 38 H 1.08998 * 110.90646 * 338.63980 * 23 21 20 39 39 H 1.08995 * 110.91151 * 102.24696 * 23 21 20 40 40 H 1.09002 * 110.61455 * 278.52235 * 24 23 21 41 41 H 1.08995 * 110.75226 * 155.58963 * 24 23 21 42 42 H 1.08997 * 109.87759 * 267.09083 * 26 25 24 43 43 H 1.09001 * 110.00051 * 146.00946 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7494 1.2428 5 1 2.3529 -0.0458 2.0201 6 7 1.0472 -1.6853 1.7476 7 6 1.0889 -2.0982 3.0526 8 1 1.8645 -1.7335 3.7098 9 6 0.1343 -2.9854 3.5308 10 7 -0.8105 -3.4301 2.7297 11 14 0.1909 -3.5480 5.3112 12 1 -0.6112 -2.6207 6.1491 13 1 -0.3695 -4.9193 5.4149 14 1 1.5984 -3.5512 5.7848 15 6 3.2876 -1.5142 0.6926 16 6 2.8145 -1.8795 -0.7365 17 7 2.0301 -0.7142 -1.1838 18 6 1.8073 -0.3624 -2.4656 19 8 1.1434 0.6207 -2.7180 20 6 2.3832 -1.1905 -3.5852 21 6 1.9850 -0.5780 -4.9296 22 1 0.9011 -0.4886 -5.0009 23 6 2.5395 -1.4288 -6.0981 24 6 3.0049 -0.3409 -7.0994 25 8 3.5324 0.6980 -6.2468 26 6 2.6530 0.7983 -5.1141 27 1 -0.3633 0.3830 0.9537 28 1 -0.3633 0.6343 -0.8085 29 1 -0.3633 -1.0174 -0.1451 30 1 0.3504 -2.0127 1.1574 31 1 -1.4777 -4.0498 3.0640 32 1 4.1654 -0.8688 0.6605 33 1 3.4855 -2.4105 1.2803 34 1 3.6716 -2.0339 -1.3920 35 1 2.1903 -2.7726 -0.7128 36 1 3.4698 -1.2084 -3.5021 37 1 1.9970 -2.2078 -3.5205 38 1 3.3799 -2.0401 -5.7695 39 1 1.7560 -2.0488 -6.5338 40 1 2.1616 0.0313 -7.6811 41 1 3.7822 -0.7290 -7.7575 42 1 1.8931 1.5571 -5.3010 43 1 3.2228 1.0565 -4.2215 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074575155.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:58 Heat of formation + Delta-G solvation = -69.738000 kcal Electronic energy + Delta-G solvation = -23037.298114 eV Core-core repulsion = 19696.606838 eV Total energy + Delta-G solvation = -3340.691276 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.29636 -39.25025 -37.43196 -34.00425 -33.57482 -31.64604 -30.82700 -30.02427 -28.92945 -26.80185 -25.22925 -23.59326 -23.02701 -22.31191 -20.79435 -19.54008 -18.42928 -17.52503 -16.89232 -16.65263 -16.04892 -15.94902 -15.09071 -14.92958 -14.58426 -14.05703 -13.86253 -13.33340 -13.23841 -13.11231 -12.77221 -12.48130 -12.39339 -12.22787 -11.82529 -11.68481 -11.43834 -11.28192 -11.07969 -11.00866 -10.96029 -10.85041 -10.75426 -10.64834 -10.26427 -10.06253 -9.77382 -9.66182 -9.45472 -8.98824 -8.31671 -7.05890 -5.84924 -3.14479 2.85161 3.23530 3.38646 3.44263 3.45645 3.83114 4.30127 4.50917 4.52017 4.71768 4.77558 5.00564 5.04828 5.09217 5.22673 5.29008 5.43853 5.46111 5.50651 5.52978 5.56362 5.62410 5.69108 5.71302 5.75096 5.83054 5.90601 5.99407 6.03019 6.11258 6.33822 6.40000 6.50726 6.60019 6.71547 6.76167 6.86240 6.97677 7.63490 7.85263 8.33255 8.40957 9.45168 10.00391 10.35638 11.37288 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.038281 B = 0.003445 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.257947 B = 8124.756362 C = 8170.217336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.126 3.874 3 H 0.070 0.930 4 C 0.171 3.829 5 H 0.068 0.932 6 N -0.714 5.714 7 C -0.244 4.244 8 H 0.072 0.928 9 C -0.010 4.010 10 N -0.930 5.930 11 Si 0.907 3.093 12 H -0.290 1.290 13 H -0.292 1.292 14 H -0.282 1.282 15 C -0.160 4.160 16 C 0.105 3.895 17 N -0.608 5.608 18 C 0.524 3.476 19 O -0.547 6.547 20 C -0.129 4.129 21 C -0.105 4.105 22 H 0.091 0.909 23 C -0.152 4.152 24 C 0.046 3.954 25 O -0.385 6.385 26 C 0.061 3.939 27 H 0.069 0.931 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.388 0.612 31 H 0.256 0.744 32 H 0.061 0.939 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.059 0.941 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.304 3.279 -15.424 17.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.023 3.977 3 H 0.088 0.912 4 C 0.059 3.941 5 H 0.086 0.914 6 N -0.356 5.356 7 C -0.375 4.375 8 H 0.090 0.910 9 C -0.206 4.206 10 N -0.578 5.578 11 Si 0.738 3.262 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.207 1.207 15 C -0.201 4.201 16 C -0.018 4.018 17 N -0.342 5.342 18 C 0.312 3.688 19 O -0.425 6.425 20 C -0.169 4.169 21 C -0.124 4.124 22 H 0.110 0.890 23 C -0.190 4.190 24 C -0.030 4.030 25 O -0.304 6.304 26 C -0.016 4.016 27 H 0.088 0.912 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.224 0.776 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.106 0.894 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.077 0.923 41 H 0.109 0.891 42 H 0.081 0.919 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.126 3.902 -15.470 17.905 hybrid contribution -0.440 -0.827 0.941 1.328 sum 7.686 3.074 -14.529 16.722 Atomic orbital electron populations 1.21893 0.94240 1.02365 1.01959 1.21980 0.95399 0.95585 0.84785 0.91221 1.21208 0.89146 0.91609 0.92103 0.91383 1.42533 1.31126 1.51609 1.10346 1.19237 1.09892 1.21166 0.87213 0.91035 1.24748 0.97755 1.00120 0.98005 1.69663 1.17217 1.36270 1.34666 0.86191 0.77430 0.77807 0.84728 1.21690 1.21818 1.20728 1.23511 0.99262 1.02399 0.94946 1.22299 0.94387 0.88821 0.96300 1.48700 1.51934 1.28487 1.05032 1.20201 0.80617 0.85433 0.82513 1.90669 1.40453 1.28062 1.83354 1.21733 1.02349 1.00335 0.92457 1.22294 1.01868 0.94898 0.93313 0.89027 1.23227 1.01631 0.98352 0.95795 1.23517 0.98758 0.87361 0.93406 1.88861 1.50209 1.56991 1.34323 1.23172 0.93069 0.96367 0.88993 0.91213 0.92875 0.92042 0.77562 0.93423 0.92079 0.89410 0.91783 0.91029 0.88855 0.88642 0.90219 0.90018 0.92303 0.89149 0.91899 0.89943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 8.13 37.16 0.30 -2.46 16 2 C 0.13 2.19 3.43 -66.95 -0.23 1.96 16 3 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 4 C 0.17 3.19 3.47 -66.10 -0.23 2.96 16 5 H 0.07 1.26 8.11 -51.93 -0.42 0.84 16 6 N -0.71 -16.62 4.59 -51.65 -0.24 -16.86 16 7 C -0.24 -6.37 9.97 -15.06 -0.15 -6.52 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 9 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 10 N -0.93 -27.03 13.06 55.49 0.72 -26.31 16 11 Si 0.91 21.60 29.55 -169.99 -5.02 16.57 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 15 C -0.16 -2.51 6.77 -24.58 -0.17 -2.68 16 16 C 0.10 1.50 6.67 -2.53 -0.02 1.48 16 17 N -0.61 -9.52 3.07 -163.02 -0.50 -10.02 16 18 C 0.52 7.96 7.15 -10.99 -0.08 7.89 16 19 O -0.55 -9.81 14.25 5.56 0.08 -9.73 16 20 C -0.13 -1.44 3.94 -27.88 -0.11 -1.55 16 21 C -0.10 -1.13 2.67 -89.09 -0.24 -1.37 16 22 H 0.09 1.07 8.02 -51.93 -0.42 0.66 16 23 C -0.15 -1.27 6.71 -24.72 -0.17 -1.43 16 24 C 0.05 0.41 7.72 38.22 0.29 0.71 16 25 O -0.38 -4.77 11.52 -35.23 -0.41 -5.17 16 26 C 0.06 0.74 6.31 37.73 0.24 0.98 16 27 H 0.07 1.37 8.12 -51.93 -0.42 0.94 16 28 H 0.05 0.99 7.14 -51.93 -0.37 0.62 16 29 H 0.06 1.27 6.64 -51.93 -0.34 0.92 16 30 H 0.39 9.74 5.75 -40.82 -0.23 9.51 16 31 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 34 H 0.06 0.73 7.48 -51.93 -0.39 0.34 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.09 0.93 7.85 -51.93 -0.41 0.52 16 37 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.08 0.61 7.87 -51.93 -0.41 0.20 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.08 1.08 7.26 -51.93 -0.38 0.71 16 LS Contribution 339.44 15.07 5.12 5.12 Total: -1.00 -30.19 339.44 -8.03 -38.22 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -7.14 Total: 8.59 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -0.64 Total: -0.41 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: -0.01 Total: -53.19 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.33 Total: -14.90 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.19 -8.03 -38.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074575155.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.513 kcal (2) G-P(sol) polarization free energy of solvation -30.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds