Wall clock time and date at job start Tue Mar 31 2020 07:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 C 1.53781 * 113.61516 * 249.13657 * 3 2 1 5 5 C 1.53947 * 87.01844 * 220.05030 * 4 3 2 6 6 C 1.50698 * 113.54032 * 270.81029 * 5 4 3 7 7 O 1.21281 * 119.99863 * 97.49470 * 6 5 4 8 8 N 1.34776 * 120.00337 * 277.49907 * 6 5 4 9 9 C 1.47426 * 125.64650 * 0.02562 * 8 6 5 10 10 C 1.54906 * 104.83138 * 204.08982 * 9 8 6 11 11 C 1.55155 * 101.58504 * 322.99026 * 10 9 8 12 12 H 1.08998 * 110.71856 * 277.14067 * 11 10 9 13 13 N 1.46495 * 110.72296 * 154.04274 * 11 10 9 14 14 C 1.36935 * 120.00438 * 86.45506 * 13 11 10 15 15 H 1.08009 * 119.99600 * 359.97438 * 14 13 11 16 16 C 1.38803 * 120.00639 * 180.02562 * 14 13 11 17 17 N 1.31630 * 119.99957 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00531 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46663 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47183 * 119.99728 * 18 16 14 21 21 H 1.48498 * 109.47142 * 239.99808 * 18 16 14 22 22 C 1.47018 * 125.64899 * 179.71135 * 8 6 5 23 23 H 1.08997 * 109.88451 * 298.39220 * 22 8 6 24 24 C 1.53002 * 109.88489 * 59.56273 * 22 8 6 25 25 C 1.53776 * 87.11463 * 25.36401 * 5 4 3 26 26 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 27 27 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 28 28 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 29 29 H 1.08997 * 112.84647 * 20.33846 * 3 2 1 30 30 H 1.08999 * 113.61449 * 334.57015 * 4 3 2 31 31 H 1.09003 * 113.60980 * 105.47166 * 4 3 2 32 32 H 1.09002 * 113.66598 * 139.93757 * 5 4 3 33 33 H 1.09007 * 110.36437 * 322.92631 * 9 8 6 34 34 H 1.08994 * 110.36938 * 85.25073 * 9 8 6 35 35 H 1.09008 * 111.00576 * 81.06175 * 10 9 8 36 36 H 1.08997 * 111.00969 * 204.87379 * 10 9 8 37 37 H 0.97009 * 120.00006 * 266.45293 * 13 11 10 38 38 H 0.96994 * 120.00185 * 180.02562 * 17 16 14 39 39 H 1.08997 * 109.47021 * 58.54190 * 24 22 8 40 40 H 1.08997 * 109.47033 * 178.54505 * 24 22 8 41 41 H 1.09002 * 109.46645 * 298.54653 * 24 22 8 42 42 H 1.08998 * 113.61633 * 220.08770 * 25 5 4 43 43 H 1.08999 * 113.61448 * 89.18726 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 2.7192 1.6642 -1.3166 5 6 3.8119 2.3230 -0.4553 6 6 3.5420 3.7730 -0.1462 7 8 3.0383 4.0838 0.9124 8 7 3.8603 4.7245 -1.0461 9 6 4.4739 4.4882 -2.3656 10 6 5.1839 5.8194 -2.7169 11 6 4.1892 6.8636 -2.1446 12 1 3.3811 7.0539 -2.8509 13 7 4.8827 8.1086 -1.8055 14 6 5.0706 9.0702 -2.7622 15 1 4.7079 8.9104 -3.7670 16 6 5.7282 10.2496 -2.4412 17 7 6.1707 10.4442 -1.2168 18 14 5.9852 11.5610 -3.7465 19 1 5.3981 11.1024 -5.0311 20 1 5.3218 12.8196 -3.3210 21 1 7.4393 11.8036 -3.9248 22 6 3.6473 6.1693 -0.8771 23 1 2.5831 6.3765 -0.7649 24 6 4.4099 6.6675 0.3522 25 6 3.3923 1.3645 0.6717 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.3219 2.0752 0.3491 30 1 3.0680 0.7958 -1.8754 31 1 2.1633 2.3704 -1.9335 32 1 4.8232 2.1487 -0.8228 33 1 5.1983 3.6758 -2.3072 34 1 3.7065 4.2609 -3.1056 35 1 6.1518 5.8888 -2.2203 36 1 5.2918 5.9320 -3.7956 37 1 5.2087 8.2520 -0.9032 38 1 6.6298 11.2686 -0.9923 39 1 5.4714 6.4505 0.2338 40 1 4.2683 7.7433 0.4562 41 1 4.0331 6.1637 1.2423 42 1 3.3792 1.8289 1.6577 43 1 3.9256 0.4139 0.6576 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074700629.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:52 Heat of formation + Delta-G solvation = -37.264813 kcal Electronic energy + Delta-G solvation = -22926.127289 eV Core-core repulsion = 19586.844156 eV Total energy + Delta-G solvation = -3339.283133 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.71906 -38.98500 -37.40322 -35.71382 -34.19520 -31.68020 -30.72649 -29.07901 -27.32495 -25.90682 -25.41411 -25.18139 -23.41514 -22.65763 -20.93053 -19.17490 -18.32544 -17.57669 -17.40723 -16.41865 -16.02510 -15.56074 -15.33337 -15.20692 -14.60455 -14.22520 -13.72033 -13.63401 -13.17120 -13.06516 -12.69517 -12.64187 -12.41128 -12.18337 -12.02207 -11.80788 -11.53587 -11.36174 -11.23233 -11.00371 -10.96807 -10.85140 -10.67141 -10.47628 -10.21304 -9.98723 -9.75135 -9.67287 -9.47471 -8.97841 -8.41772 -7.04767 -5.84035 -3.14000 2.71033 3.10352 3.39161 3.44925 3.47234 3.60468 4.31081 4.39105 4.48897 4.53024 4.60639 4.91806 5.01743 5.13410 5.16075 5.23121 5.25801 5.39483 5.42976 5.51781 5.52053 5.55657 5.60564 5.64731 5.79755 5.83834 5.88735 5.94243 6.04613 6.09963 6.20930 6.30562 6.54187 6.54522 6.69896 6.81215 6.97008 7.01610 7.64348 7.75512 8.32318 8.35069 9.46151 10.01211 10.36103 11.38490 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.042285 B = 0.003340 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.016073 B = 8381.602449 C = 8594.766988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.379 6.379 3 C 0.062 3.938 4 C -0.138 4.138 5 C -0.134 4.134 6 C 0.542 3.458 7 O -0.542 6.542 8 N -0.605 5.605 9 C 0.098 3.902 10 C -0.154 4.154 11 C 0.174 3.826 12 H 0.062 0.938 13 N -0.718 5.718 14 C -0.244 4.244 15 H 0.072 0.928 16 C -0.011 4.011 17 N -0.931 5.931 18 Si 0.908 3.092 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 C 0.128 3.872 23 H 0.070 0.930 24 C -0.158 4.158 25 C -0.115 4.115 26 H 0.042 0.958 27 H 0.040 0.960 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.391 0.609 38 H 0.256 0.744 39 H 0.056 0.944 40 H 0.079 0.921 41 H 0.060 0.940 42 H 0.087 0.913 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.094 -19.515 -0.488 20.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.298 6.298 3 C 0.004 3.996 4 C -0.176 4.176 5 C -0.156 4.156 6 C 0.330 3.670 7 O -0.420 6.420 8 N -0.338 5.338 9 C -0.025 4.025 10 C -0.195 4.195 11 C 0.062 3.938 12 H 0.080 0.920 13 N -0.361 5.361 14 C -0.375 4.375 15 H 0.090 0.910 16 C -0.207 4.207 17 N -0.579 5.579 18 Si 0.739 3.261 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.218 1.218 22 C 0.025 3.975 23 H 0.088 0.912 24 C -0.216 4.216 25 C -0.153 4.153 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.102 0.898 29 H 0.110 0.890 30 H 0.117 0.883 31 H 0.091 0.909 32 H 0.124 0.876 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.229 0.771 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.097 0.903 41 H 0.079 0.921 42 H 0.106 0.894 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.267 -19.413 -0.003 20.729 hybrid contribution 0.230 1.051 -0.591 1.227 sum -7.038 -18.362 -0.594 19.674 Atomic orbital electron populations 1.22775 0.81326 1.02506 1.00095 1.87909 1.19596 1.27672 1.94592 1.23826 0.94480 0.85092 0.96164 1.23453 0.96368 1.00547 0.97207 1.22192 1.01385 0.91884 1.00116 1.19635 0.78084 0.86144 0.83099 1.90670 1.44364 1.82719 1.24249 1.48565 1.60796 1.07045 1.17422 1.22387 0.96602 0.99445 0.84045 1.23554 1.00528 0.93674 1.01770 1.21167 0.93447 0.86927 0.92289 0.92033 1.42669 1.66949 1.14127 1.12358 1.19276 1.30834 0.95482 0.91871 0.91016 1.24763 1.01084 0.98304 0.96588 1.69672 1.43741 1.26652 1.17789 0.86104 0.77447 0.81861 0.80655 1.20512 1.21827 1.21841 1.21836 0.99508 0.78608 0.97585 0.91152 1.21999 1.00185 1.02325 0.97136 1.23071 0.94750 0.98639 0.98791 0.93950 0.94084 0.89816 0.89011 0.88254 0.90868 0.87551 0.91288 0.91679 0.90656 0.90579 0.77108 0.93409 0.92507 0.90270 0.92131 0.89418 0.88575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.85 101.05 1.10 1.34 16 2 O -0.38 -4.18 10.71 -35.23 -0.38 -4.56 16 3 C 0.06 0.69 3.95 -25.92 -0.10 0.58 16 4 C -0.14 -1.35 7.50 -25.83 -0.19 -1.55 16 5 C -0.13 -1.50 3.51 -90.88 -0.32 -1.82 16 6 C 0.54 8.12 6.89 -10.99 -0.08 8.04 16 7 O -0.54 -9.83 14.63 5.56 0.08 -9.75 16 8 N -0.60 -9.10 3.08 -163.01 -0.50 -9.60 16 9 C 0.10 1.25 6.69 -2.53 -0.02 1.23 16 10 C -0.15 -2.46 6.77 -24.59 -0.17 -2.63 16 11 C 0.17 3.28 3.44 -66.09 -0.23 3.06 16 12 H 0.06 1.16 8.12 -51.93 -0.42 0.74 16 13 N -0.72 -17.19 5.02 -51.65 -0.26 -17.45 16 14 C -0.24 -6.48 9.98 -15.06 -0.15 -6.63 16 15 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 16 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 17 N -0.93 -27.44 13.06 55.49 0.72 -26.71 16 18 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 22 C 0.13 2.25 3.49 -66.94 -0.23 2.02 16 23 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 24 C -0.16 -2.98 7.94 37.16 0.30 -2.69 16 25 C -0.11 -1.26 7.29 -25.92 -0.19 -1.45 16 26 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.09 1.11 7.81 -51.93 -0.41 0.70 16 30 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 32 H 0.11 1.02 7.47 -51.93 -0.39 0.63 16 33 H 0.07 0.74 7.24 -51.92 -0.38 0.36 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 1.33 8.14 -51.92 -0.42 0.91 16 36 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.39 9.94 4.97 -40.82 -0.20 9.74 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.06 1.09 8.06 -51.93 -0.42 0.68 16 40 H 0.08 1.62 6.74 -51.93 -0.35 1.27 16 41 H 0.06 1.14 6.74 -51.93 -0.35 0.79 16 42 H 0.09 1.09 7.43 -51.93 -0.39 0.70 16 43 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 343.27 15.07 5.17 5.17 Total: -1.00 -30.84 343.27 -7.63 -38.47 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -7.07 Total: 8.53 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -0.38 Total: -0.88 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: -0.04 Total: -53.77 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -0.30 Total: -14.31 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.84 -7.63 -38.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074700629.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.209 kcal (2) G-P(sol) polarization free energy of solvation -30.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds