Wall clock time and date at job start Tue Mar 31 2020 07:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 110.54616 * 2 1 4 4 C 1.54818 * 110.48788 * 237.37834 * 2 1 3 5 5 C 1.54995 * 102.09116 * 220.44370 * 4 2 1 6 6 O 1.44377 * 103.49093 * 37.02836 * 5 4 2 7 7 C 1.43740 * 106.97453 * 319.93446 * 6 5 4 8 8 H 1.08997 * 109.87900 * 266.93843 * 7 6 5 9 9 C 1.50704 * 109.87964 * 145.93897 * 7 6 5 10 10 O 1.21287 * 119.99744 * 345.46292 * 9 7 6 11 11 N 1.34779 * 120.00189 * 165.46574 * 9 7 6 12 12 C 1.47422 * 125.64586 * 354.80683 * 11 9 7 13 13 C 1.55128 * 104.94144 * 204.03861 * 12 11 9 14 14 C 1.55153 * 101.48572 * 323.22427 * 13 12 11 15 15 H 1.08998 * 110.71875 * 276.82575 * 14 13 12 16 16 N 1.46496 * 110.72118 * 153.73170 * 14 13 12 17 17 C 1.36936 * 119.99989 * 88.56406 * 16 14 13 18 18 H 1.08000 * 119.99806 * 0.27931 * 17 16 14 19 19 C 1.38820 * 120.00208 * 180.27667 * 17 16 14 20 20 N 1.31621 * 119.99781 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99950 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46824 * 90.00246 * 21 19 17 23 23 H 1.48491 * 109.47081 * 210.00101 * 21 19 17 24 24 H 1.48496 * 109.47206 * 330.00151 * 21 19 17 25 25 C 1.47016 * 125.64830 * 174.85285 * 11 9 7 26 26 H 1.09000 * 110.01164 * 298.38906 * 25 11 9 27 27 C 1.53002 * 109.88682 * 59.48358 * 25 11 9 28 28 H 1.09003 * 109.47262 * 301.99606 * 1 2 3 29 29 H 1.09000 * 109.47157 * 61.99411 * 1 2 3 30 30 H 1.09000 * 109.47502 * 181.99145 * 1 2 3 31 31 H 1.09005 * 110.90069 * 102.25042 * 4 2 1 32 32 H 1.08993 * 110.93566 * 338.66080 * 4 2 1 33 33 H 1.09000 * 110.62078 * 278.52301 * 5 4 2 34 34 H 1.09004 * 110.61267 * 155.52597 * 5 4 2 35 35 H 1.09005 * 110.36652 * 323.00306 * 12 11 9 36 36 H 1.09000 * 110.36677 * 85.21681 * 12 11 9 37 37 H 1.08997 * 111.15945 * 205.12869 * 13 12 11 38 38 H 1.09003 * 110.93126 * 81.21655 * 13 12 11 39 39 H 0.97000 * 120.00285 * 268.84689 * 16 14 13 40 40 H 0.96998 * 119.99324 * 180.02562 * 20 19 17 41 41 H 1.08998 * 109.46969 * 177.81011 * 27 25 11 42 42 H 1.08994 * 109.46817 * 297.81144 * 27 25 11 43 43 H 1.09000 * 109.46785 * 57.80895 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9125 1.0206 0.0000 4 6 2.0718 -0.7818 -1.2215 5 6 3.2659 -1.5562 -0.6076 6 8 2.7954 -1.9110 0.7104 7 6 2.0693 -0.7781 1.2159 8 1 2.7344 -0.1424 1.8003 9 6 0.9226 -1.2460 2.0746 10 8 0.5711 -2.4062 2.0372 11 7 0.2876 -0.3752 2.8839 12 6 0.6761 1.0291 3.1084 13 6 0.0851 1.3906 4.4964 14 6 -1.2581 0.6144 4.4719 15 1 -2.0247 1.1867 3.9496 16 7 -1.6936 0.2891 5.8323 17 6 -2.4663 1.1754 6.5341 18 1 -2.7584 2.1122 6.0831 19 6 -2.8742 0.8697 7.8254 20 7 -2.5179 -0.2719 8.3752 21 14 -3.9277 2.0791 8.7830 22 1 -5.3629 1.7950 8.5284 23 1 -3.6454 1.9403 10.2342 24 1 -3.6122 3.4633 8.3476 25 6 -0.9064 -0.6687 3.6897 26 1 -1.7364 -0.9456 3.0396 27 6 -0.6081 -1.8081 4.6663 28 1 -0.3634 0.5445 0.8716 29 1 -0.3633 0.4826 -0.9073 30 1 -0.3634 -1.0270 0.0357 31 1 2.4103 -0.0993 -2.0011 32 1 1.3199 -1.4694 -1.6086 33 1 4.1456 -0.9159 -0.5417 34 1 3.4838 -2.4508 -1.1911 35 1 1.7618 1.1251 3.1206 36 1 0.2480 1.6691 2.3368 37 1 -0.0852 2.4636 4.5841 38 1 0.7292 1.0318 5.2993 39 1 -1.4313 -0.5523 6.2374 40 1 -2.8033 -0.4856 9.2773 41 1 -1.4849 -1.9939 5.2865 42 1 -0.3608 -2.7104 4.1071 43 1 0.2339 -1.5316 5.3008 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074893090.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:13 Heat of formation + Delta-G solvation = -55.431794 kcal Electronic energy + Delta-G solvation = -23612.551123 eV Core-core repulsion = 20272.480211 eV Total energy + Delta-G solvation = -3340.070913 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.78986 -39.02151 -37.10746 -34.40566 -33.64841 -31.75375 -30.71703 -30.19323 -28.70373 -26.91691 -25.21363 -23.82740 -23.05498 -22.43586 -21.20994 -19.48113 -18.51016 -17.56976 -17.23764 -16.65704 -16.14247 -15.64412 -14.91436 -14.66302 -14.48596 -14.12237 -13.92663 -13.69788 -13.24884 -13.12693 -12.75022 -12.49662 -12.40319 -12.08601 -11.88602 -11.59748 -11.52775 -11.32534 -11.24361 -11.16988 -10.99733 -10.97635 -10.81397 -10.45007 -10.23275 -10.11145 -9.97697 -9.70070 -9.21989 -8.95804 -8.37609 -7.03408 -5.82388 -3.12347 2.72560 2.96590 3.40525 3.45625 3.47571 3.85124 4.16560 4.41965 4.49204 4.54404 4.73196 4.91767 5.00062 5.06326 5.14330 5.22347 5.32898 5.38369 5.40649 5.49504 5.50980 5.56037 5.62760 5.68596 5.71878 5.81866 5.85666 6.05946 6.08699 6.12503 6.24334 6.32077 6.53938 6.56653 6.60646 6.75641 6.87697 7.00908 7.65057 7.76543 8.35731 8.39698 9.47672 10.03000 10.37829 11.40037 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.040645 B = 0.003859 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.732603 B = 7253.775359 C = 7543.570125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.110 4.110 3 H 0.091 0.909 4 C -0.150 4.150 5 C 0.044 3.956 6 O -0.349 6.349 7 C 0.064 3.936 8 H 0.088 0.912 9 C 0.535 3.465 10 O -0.525 6.525 11 N -0.608 5.608 12 C 0.095 3.905 13 C -0.153 4.153 14 C 0.174 3.826 15 H 0.064 0.936 16 N -0.717 5.717 17 C -0.246 4.246 18 H 0.071 0.929 19 C -0.010 4.010 20 N -0.930 5.930 21 Si 0.908 3.092 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.130 3.870 26 H 0.070 0.930 27 C -0.160 4.160 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.095 0.905 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.391 0.609 40 H 0.257 0.743 41 H 0.079 0.921 42 H 0.062 0.938 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.382 3.228 -18.559 21.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.129 4.129 3 H 0.110 0.890 4 C -0.188 4.188 5 C -0.032 4.032 6 O -0.267 6.267 7 C 0.003 3.997 8 H 0.106 0.894 9 C 0.322 3.678 10 O -0.400 6.400 11 N -0.344 5.344 12 C -0.029 4.029 13 C -0.195 4.195 14 C 0.062 3.938 15 H 0.082 0.918 16 N -0.360 5.360 17 C -0.377 4.377 18 H 0.089 0.911 19 C -0.207 4.207 20 N -0.578 5.578 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.207 1.207 25 C 0.027 3.973 26 H 0.088 0.912 27 C -0.218 4.218 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.114 0.886 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.229 0.771 40 H 0.066 0.934 41 H 0.097 0.903 42 H 0.080 0.920 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.143 2.444 -18.416 21.166 hybrid contribution -0.369 0.734 0.649 1.047 sum 9.774 3.178 -17.767 20.525 Atomic orbital electron populations 1.22095 0.93371 1.03252 1.02940 1.22429 0.97759 0.99670 0.93086 0.89038 1.23251 0.98497 0.99474 0.97563 1.23606 0.95982 0.99953 0.83703 1.89000 1.70638 1.35968 1.31047 1.22745 0.92949 0.88499 0.95513 0.89420 1.19780 0.83224 0.85247 0.79540 1.90693 1.65736 1.17127 1.66470 1.48551 1.30011 1.11903 1.43954 1.22474 0.99470 0.82090 0.98825 1.23595 1.00151 1.01519 0.94204 1.21174 0.93349 0.91411 0.87870 0.91825 1.42680 1.60811 1.22364 1.10185 1.19242 1.23961 0.98777 0.95685 0.91065 1.24761 1.01121 0.97363 0.97407 1.69663 1.49791 1.22912 1.15434 0.86177 0.80240 0.80303 0.79349 1.21666 1.21776 1.20727 1.21841 0.85894 0.97400 0.92177 0.91152 1.22024 1.02731 0.98008 0.99037 0.90888 0.91975 0.91750 0.89908 0.90033 0.91963 0.88640 0.91517 0.91532 0.90535 0.90659 0.77057 0.93354 0.90265 0.91953 0.92609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 7.94 37.15 0.30 -1.39 16 2 C -0.11 -1.05 3.62 -89.09 -0.32 -1.37 16 3 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 4 C -0.15 -1.23 6.71 -24.72 -0.17 -1.40 16 5 C 0.04 0.41 7.72 38.21 0.29 0.70 16 6 O -0.35 -4.93 10.78 -54.36 -0.59 -5.51 16 7 C 0.06 0.81 3.22 -27.31 -0.09 0.72 16 8 H 0.09 0.96 7.08 -51.93 -0.37 0.59 16 9 C 0.53 8.64 4.84 -10.98 -0.05 8.59 16 10 O -0.52 -10.61 15.25 -13.58 -0.21 -10.82 16 11 N -0.61 -9.26 2.14 -162.88 -0.35 -9.61 16 12 C 0.09 1.19 6.13 -2.41 -0.01 1.17 16 13 C -0.15 -2.43 6.79 -24.47 -0.17 -2.60 16 14 C 0.17 3.28 3.46 -66.10 -0.23 3.05 16 15 H 0.06 1.18 8.11 -51.93 -0.42 0.76 16 16 N -0.72 -17.22 4.98 -51.65 -0.26 -17.48 16 17 C -0.25 -6.54 9.97 -15.06 -0.15 -6.69 16 18 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 19 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 20 N -0.93 -27.53 13.06 55.49 0.72 -26.81 16 21 Si 0.91 21.82 29.55 -169.99 -5.02 16.79 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 C 0.13 2.31 3.51 -66.95 -0.24 2.07 16 26 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 27 C -0.16 -3.11 7.93 37.16 0.29 -2.81 16 28 H 0.07 0.82 5.00 -51.93 -0.26 0.56 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.85 7.31 -51.93 -0.38 0.47 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.73 7.87 -51.93 -0.41 0.32 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.71 7.09 -51.93 -0.37 0.34 16 36 H 0.07 0.70 6.93 -51.93 -0.36 0.34 16 37 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.39 10.02 4.99 -40.82 -0.20 9.82 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 41 H 0.08 1.66 6.72 -51.93 -0.35 1.31 16 42 H 0.06 1.24 6.62 -51.93 -0.34 0.89 16 43 H 0.05 1.11 8.06 -51.93 -0.42 0.69 16 LS Contribution 331.47 15.07 5.00 5.00 Total: -1.00 -32.23 331.47 -8.15 -40.38 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -6.81 Total: 8.39 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -0.64 Total: -0.33 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: 0.12 Total: -53.90 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.79 Total: -16.33 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.23 -8.15 -40.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074893090.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.054 kcal (2) G-P(sol) polarization free energy of solvation -32.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds