Wall clock time and date at job start Tue Mar 31 2020 06:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 110.42165 * 2 1 4 4 C 1.54480 * 110.37176 * 237.69369 * 2 1 3 5 5 C 1.54506 * 104.06318 * 217.19104 * 4 2 1 6 6 C 1.54477 * 104.06179 * 359.97438 * 5 4 2 7 7 H 1.09006 * 110.46634 * 265.09870 * 6 5 4 8 8 C 1.50702 * 110.37209 * 142.81293 * 6 5 4 9 9 O 1.21274 * 120.00056 * 248.16741 * 8 6 5 10 10 N 1.34782 * 119.99960 * 68.16387 * 8 6 5 11 11 C 1.47429 * 125.64722 * 179.97438 * 10 8 6 12 12 C 1.54904 * 104.82898 * 204.16234 * 11 10 8 13 13 H 1.09000 * 111.00196 * 81.07023 * 12 11 10 14 14 C 1.53001 * 111.00085 * 204.91375 * 12 11 10 15 15 C 1.55151 * 101.58740 * 322.99148 * 12 11 10 16 16 H 1.08999 * 110.87049 * 277.07030 * 15 12 11 17 17 N 1.46501 * 110.72308 * 153.86492 * 15 12 11 18 18 C 1.36932 * 119.99845 * 160.02439 * 17 15 12 19 19 H 1.08002 * 120.00437 * 0.02562 * 18 17 15 20 20 C 1.38811 * 119.99901 * 179.97438 * 18 17 15 21 21 N 1.31620 * 120.00372 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99955 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.46845 * 269.99982 * 22 20 18 24 24 H 1.48503 * 109.47399 * 29.99472 * 22 20 18 25 25 H 1.48498 * 109.47295 * 150.00079 * 22 20 18 26 26 C 1.47018 * 125.65012 * 0.02562 * 10 8 6 27 27 O 1.44420 * 104.80636 * 23.98026 * 6 5 4 28 28 H 1.09009 * 109.46850 * 299.14128 * 1 2 3 29 29 H 1.08994 * 109.47523 * 59.14024 * 1 2 3 30 30 H 1.09002 * 109.47210 * 179.14621 * 1 2 3 31 31 H 1.09001 * 110.51149 * 335.83674 * 4 2 1 32 32 H 1.08997 * 110.51310 * 98.54247 * 4 2 1 33 33 H 1.08999 * 110.50668 * 241.35411 * 5 4 2 34 34 H 1.08999 * 110.51295 * 118.64762 * 5 4 2 35 35 H 1.08997 * 110.36303 * 323.00643 * 11 10 8 36 36 H 1.09004 * 110.36180 * 85.32604 * 11 10 8 37 37 H 1.09005 * 109.46878 * 172.19617 * 14 12 11 38 38 H 1.08999 * 109.47584 * 292.19703 * 14 12 11 39 39 H 1.09000 * 109.47137 * 52.20086 * 14 12 11 40 40 H 0.97000 * 119.99725 * 340.02874 * 17 15 12 41 41 H 0.96993 * 120.00251 * 180.02562 * 21 20 18 42 42 H 1.09001 * 109.88281 * 59.48658 * 26 10 8 43 43 H 1.08996 * 110.01113 * 298.39612 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0677 -0.7740 -1.2240 5 6 3.3177 -1.5057 -0.6860 6 6 3.3876 -1.0867 0.7992 7 1 4.0533 -0.2325 0.9233 8 6 3.8533 -2.2411 1.6486 9 8 3.0898 -2.7640 2.4324 10 7 5.1184 -2.6926 1.5371 11 6 5.7033 -3.8081 2.3033 12 6 7.2284 -3.5371 2.2964 13 1 7.4984 -2.8039 3.0564 14 6 8.0168 -4.8347 2.4850 15 6 7.4364 -2.9623 0.8703 16 1 7.5301 -3.7644 0.1382 17 7 8.6104 -2.0869 0.8303 18 6 9.2143 -1.8058 -0.3660 19 1 8.8250 -2.2290 -1.2802 20 6 10.3264 -0.9758 -0.4039 21 7 10.9073 -0.7059 -1.5537 22 14 10.9993 -0.2431 1.1771 23 1 10.3422 1.0632 1.4362 24 1 10.7258 -1.1674 2.3068 25 1 12.4648 -0.0424 1.0452 26 6 6.1439 -2.1535 0.6319 27 8 2.0332 -0.7229 1.1442 28 1 -0.3633 0.5005 0.8977 29 1 -0.3634 0.5271 -0.8821 30 1 -0.3634 -1.0276 -0.0153 31 1 1.3275 -1.4918 -1.5773 32 1 2.3428 -0.0839 -2.0216 33 1 4.2107 -1.1772 -1.2176 34 1 3.1955 -2.5852 -0.7734 35 1 5.3224 -3.8076 3.3245 36 1 5.4846 -4.7585 1.8163 37 1 9.0790 -4.6391 2.3385 38 1 7.8532 -5.2160 3.4930 39 1 7.6798 -5.5736 1.7579 40 1 8.9598 -1.7065 1.6514 41 1 11.6845 -0.1263 -1.5802 42 1 6.3188 -1.1010 0.8548 43 1 5.8229 -2.2646 -0.4037 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082753330.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:29 Heat of formation + Delta-G solvation = -68.400693 kcal Electronic energy + Delta-G solvation = -23090.687156 eV Core-core repulsion = 19750.053870 eV Total energy + Delta-G solvation = -3340.633286 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.45074 -39.04357 -37.41613 -34.26571 -32.87913 -32.40948 -31.57311 -31.05414 -27.99905 -27.52348 -25.49927 -23.92141 -22.63126 -21.39264 -21.11662 -20.24380 -19.22015 -17.63775 -17.21271 -16.50313 -16.24170 -15.76031 -15.30794 -14.54956 -14.30566 -14.08089 -13.92115 -13.58830 -13.31824 -13.22381 -12.77599 -12.64828 -12.50729 -12.44065 -12.27784 -11.85536 -11.76266 -11.66793 -11.44321 -11.20018 -11.04296 -10.90187 -10.82973 -10.69380 -10.39533 -10.09375 -10.03713 -9.71572 -9.51142 -9.08137 -8.43810 -7.46425 -5.90476 -3.28710 2.68984 2.86306 3.28602 3.31766 3.37879 3.87592 4.33206 4.46253 4.47373 4.68008 4.73947 4.89616 4.97240 4.99253 5.01346 5.11901 5.20545 5.34011 5.39586 5.45404 5.48675 5.61063 5.64959 5.66294 5.71974 5.73512 5.82130 5.82939 5.88092 5.96012 6.03563 6.07687 6.23492 6.29971 6.39846 6.43772 6.67314 6.73005 7.65751 7.83539 8.28099 8.28881 9.04624 9.77033 9.95167 11.27063 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017650 B = 0.004708 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.002967 B = 5945.728772 C = 6943.525927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.065 3.935 3 H 0.071 0.929 4 C -0.149 4.149 5 C -0.143 4.143 6 C 0.063 3.937 7 H 0.095 0.905 8 C 0.534 3.466 9 O -0.534 6.534 10 N -0.612 5.612 11 C 0.116 3.884 12 C -0.117 4.117 13 H 0.082 0.918 14 C -0.135 4.135 15 C 0.183 3.817 16 H 0.076 0.924 17 N -0.736 5.736 18 C -0.254 4.254 19 H 0.092 0.908 20 C 0.012 3.988 21 N -0.928 5.928 22 Si 0.882 3.118 23 H -0.283 1.283 24 H -0.276 1.276 25 H -0.290 1.290 26 C 0.069 3.931 27 O -0.345 6.345 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.364 0.636 41 H 0.261 0.739 42 H 0.073 0.927 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.925 -1.863 2.949 15.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.008 3.992 3 H 0.089 0.911 4 C -0.186 4.186 5 C -0.181 4.181 6 C 0.002 3.998 7 H 0.112 0.888 8 C 0.321 3.679 9 O -0.410 6.410 10 N -0.347 5.347 11 C -0.006 4.006 12 C -0.137 4.137 13 H 0.100 0.900 14 C -0.192 4.192 15 C 0.071 3.929 16 H 0.093 0.907 17 N -0.378 5.378 18 C -0.384 4.384 19 H 0.110 0.890 20 C -0.185 4.185 21 N -0.575 5.575 22 Si 0.712 3.288 23 H -0.210 1.210 24 H -0.202 1.202 25 H -0.216 1.216 26 C -0.056 4.056 27 O -0.263 6.263 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.110 0.890 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.198 0.802 41 H 0.071 0.929 42 H 0.091 0.909 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.434 -2.135 3.305 15.928 hybrid contribution 0.795 0.831 0.766 1.382 sum -14.640 -1.304 4.071 15.251 Atomic orbital electron populations 1.21783 0.92982 1.03014 1.02401 1.23065 0.95555 0.95541 0.85078 0.91067 1.23011 0.97419 0.99830 0.98370 1.22903 0.99578 1.02009 0.93658 1.22749 0.86644 0.96357 0.94017 0.88780 1.19806 0.80681 0.84133 0.83289 1.90688 1.53408 1.58969 1.37958 1.48429 1.10362 1.34581 1.41366 1.22256 0.92456 0.89343 0.96586 1.22664 0.93213 0.98691 0.99136 0.89992 1.21625 1.00918 0.95741 1.00966 1.21208 0.85534 0.91954 0.94182 0.90656 1.42715 1.31151 1.57117 1.06793 1.19052 1.08585 1.24793 0.85929 0.88974 1.24666 0.97911 0.99688 0.96240 1.69690 1.23572 1.40743 1.23494 0.86603 0.78681 0.79484 0.84058 1.20988 1.20190 1.21605 1.23343 0.89345 1.00007 0.92945 1.89244 1.25195 1.74276 1.37609 0.91795 0.91083 0.91713 0.90337 0.90019 0.88987 0.90274 0.90798 0.91363 0.91428 0.92996 0.92466 0.80221 0.92865 0.90851 0.91518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.52 37.16 0.35 -0.95 16 2 C 0.07 0.71 3.92 -25.96 -0.10 0.61 16 3 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 4 C -0.15 -1.45 6.63 -25.16 -0.17 -1.62 16 5 C -0.14 -1.67 5.62 -25.17 -0.14 -1.81 16 6 C 0.06 0.90 3.08 -27.11 -0.08 0.81 16 7 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 8 C 0.53 8.91 7.12 -10.98 -0.08 8.83 16 9 O -0.53 -10.74 16.81 -13.63 -0.23 -10.97 16 10 N -0.61 -9.40 3.33 -170.52 -0.57 -9.97 16 11 C 0.12 1.64 6.38 -2.53 -0.02 1.62 16 12 C -0.12 -1.68 3.25 -88.48 -0.29 -1.97 16 13 H 0.08 1.22 8.00 -51.93 -0.42 0.80 16 14 C -0.13 -1.71 9.31 37.16 0.35 -1.37 16 15 C 0.18 3.11 3.06 -66.10 -0.20 2.91 16 16 H 0.08 1.31 8.02 -51.93 -0.42 0.89 16 17 N -0.74 -15.61 4.98 -51.66 -0.26 -15.87 16 18 C -0.25 -6.53 10.46 -15.06 -0.16 -6.69 16 19 H 0.09 2.54 8.06 -52.49 -0.42 2.11 16 20 C 0.01 0.32 5.50 -17.43 -0.10 0.22 16 21 N -0.93 -27.58 13.97 55.49 0.78 -26.81 16 22 Si 0.88 20.82 27.73 -169.99 -4.71 16.11 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.28 -6.10 6.52 56.52 0.37 -5.74 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 C 0.07 1.08 5.95 -3.07 -0.02 1.07 16 27 O -0.34 -5.21 10.60 -54.42 -0.58 -5.79 16 28 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 31 H 0.08 0.71 7.86 -51.93 -0.41 0.31 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.09 1.00 7.34 -51.93 -0.38 0.62 16 34 H 0.08 0.96 7.87 -51.93 -0.41 0.55 16 35 H 0.07 1.06 8.04 -51.93 -0.42 0.64 16 36 H 0.07 0.89 7.98 -51.93 -0.41 0.48 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.68 8.07 -51.93 -0.42 0.26 16 40 H 0.36 7.72 5.58 -40.82 -0.23 7.49 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.07 1.22 8.03 -51.93 -0.42 0.80 16 43 H 0.07 0.99 6.68 -51.93 -0.35 0.64 16 LS Contribution 342.89 15.07 5.17 5.17 Total: -1.00 -31.71 342.89 -8.30 -40.00 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -7.24 Total: 6.46 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -0.65 Total: 1.67 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: -0.05 Total: -52.64 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.81 Total: -16.76 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.71 Total: 16.11 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.71 -8.30 -40.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082753330.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.400 kcal (2) G-P(sol) polarization free energy of solvation -31.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds