Wall clock time and date at job start Tue Mar 31 2020 07:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.45541 * 2 1 4 4 C 1.54506 * 110.51131 * 237.24621 * 2 1 3 5 5 C 1.54471 * 104.06231 * 241.35364 * 4 2 1 6 6 O 1.44521 * 104.88204 * 23.90664 * 5 4 2 7 7 C 1.44423 * 105.21950 * 319.64180 * 6 5 4 8 8 H 1.09007 * 110.37546 * 281.46990 * 7 6 5 9 9 C 1.50699 * 110.37110 * 159.24893 * 7 6 5 10 10 O 1.21286 * 119.99965 * 357.94983 * 9 7 6 11 11 N 1.34783 * 120.00191 * 177.95219 * 9 7 6 12 12 C 1.46503 * 119.99656 * 180.02562 * 11 9 7 13 13 C 1.53003 * 109.46514 * 179.97438 * 12 11 9 14 14 H 1.09003 * 112.85331 * 43.80266 * 13 12 11 15 15 C 1.53784 * 113.61334 * 174.99807 * 13 12 11 16 16 C 1.53780 * 87.08421 * 140.06260 * 15 13 12 17 17 H 1.09000 * 113.61203 * 89.19720 * 16 15 13 18 18 N 1.46496 * 113.61432 * 220.02217 * 16 15 13 19 19 C 1.36945 * 119.99718 * 204.99886 * 18 16 15 20 20 H 1.07997 * 119.99756 * 359.97438 * 19 18 16 21 21 C 1.38805 * 119.99878 * 179.97438 * 19 18 16 22 22 N 1.31624 * 120.00257 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47187 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 300.00154 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00200 * 23 21 19 27 27 C 1.53788 * 113.68853 * 272.52956 * 13 12 11 28 28 H 1.09008 * 109.47195 * 297.39614 * 1 2 3 29 29 H 1.09003 * 109.47318 * 57.39588 * 1 2 3 30 30 H 1.09004 * 109.47046 * 177.39569 * 1 2 3 31 31 H 1.09002 * 110.51158 * 0.02562 * 4 2 1 32 32 H 1.09005 * 110.51162 * 122.57166 * 4 2 1 33 33 H 1.09004 * 110.37194 * 142.81639 * 5 4 2 34 34 H 1.09001 * 110.37373 * 265.14442 * 5 4 2 35 35 H 0.96991 * 119.99611 * 359.97438 * 11 9 7 36 36 H 1.08995 * 109.47697 * 60.00018 * 12 11 9 37 37 H 1.09003 * 109.46832 * 299.99075 * 12 11 9 38 38 H 1.08999 * 113.61131 * 25.51253 * 15 13 12 39 39 H 1.08995 * 113.61397 * 254.61322 * 15 13 12 40 40 H 0.96996 * 120.00499 * 24.99616 * 18 16 15 41 41 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 42 42 H 1.08994 * 113.61154 * 105.46527 * 27 13 12 43 43 H 1.08997 * 113.61469 * 334.55915 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9109 1.0213 0.0000 4 6 2.0714 -0.7829 -1.2170 5 6 2.8757 -1.9429 -0.5895 6 8 2.3090 -2.1171 0.7285 7 6 2.0713 -0.7796 1.2188 8 1 3.0013 -0.3339 1.5719 9 6 1.0479 -0.8005 2.3248 10 8 0.5283 -1.8469 2.6505 11 7 0.7100 0.3436 2.9521 12 6 -0.2845 0.3230 4.0277 13 6 -0.4824 1.7414 4.5663 14 1 -0.5539 2.4883 3.7756 15 6 -1.5979 1.8504 5.6193 16 6 -0.6778 2.8204 6.3792 17 1 -0.8037 3.8624 6.0852 18 7 -0.6989 2.6326 7.8319 19 6 -0.3769 3.6734 8.6616 20 1 -0.1071 4.6325 8.2449 21 6 -0.3975 3.4957 10.0381 22 7 -0.7259 2.3266 10.5459 23 14 0.0424 4.9152 11.1698 24 1 -0.0558 4.4703 12.5831 25 1 1.4298 5.3626 10.8865 26 1 -0.8976 6.0415 10.9395 27 6 0.5026 2.1206 5.6848 28 1 -0.3634 0.4729 0.9125 29 1 -0.3634 0.5537 -0.8657 30 1 -0.3633 -1.0266 -0.0467 31 1 1.2490 -1.1696 -1.8190 32 1 2.7200 -0.1487 -1.8214 33 1 2.7535 -2.8517 -1.1788 34 1 3.9301 -1.6768 -0.5152 35 1 1.1258 1.1803 2.6919 36 1 0.0633 -0.3253 4.8319 37 1 -1.2309 -0.0542 3.6402 38 1 -1.7868 0.9191 6.1531 39 1 -2.5088 2.3165 5.2437 40 1 -0.9410 1.7711 8.2062 41 1 -0.7399 2.2023 11.5078 42 1 1.2872 2.8049 5.3621 43 1 0.8878 1.2632 6.2366 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086200331.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:49 Heat of formation + Delta-G solvation = -56.021753 kcal Electronic energy + Delta-G solvation = -22163.453376 eV Core-core repulsion = 18823.356881 eV Total energy + Delta-G solvation = -3340.096495 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.75514 -39.02527 -38.11223 -34.82300 -33.82736 -33.18209 -30.72468 -30.05952 -27.91364 -26.58069 -25.09820 -23.99008 -23.19615 -21.60106 -21.06350 -20.14437 -19.02518 -17.43478 -17.13996 -17.02159 -16.31155 -15.58460 -15.37556 -15.09045 -14.65921 -14.46061 -14.04975 -13.76197 -13.62167 -13.30502 -12.98128 -12.96092 -12.75758 -11.94880 -11.86276 -11.77913 -11.63290 -11.40425 -11.31929 -11.23755 -11.17415 -10.82935 -10.53938 -10.27631 -10.20162 -10.12683 -9.83432 -9.70776 -9.46881 -9.02624 -8.86914 -6.97004 -5.78568 -3.07672 2.52337 2.80766 3.42654 3.47047 3.48381 3.74957 4.04681 4.29935 4.39508 4.57751 4.66294 4.74523 4.86625 4.96111 4.99195 5.03480 5.17306 5.22464 5.26641 5.33197 5.45951 5.49385 5.51010 5.56513 5.64260 5.81019 5.84154 5.90243 5.94069 6.08598 6.24007 6.29960 6.33972 6.36554 6.45827 6.58536 6.81721 7.10550 7.42513 7.67744 8.15913 8.40017 9.50857 10.09252 10.43299 11.43737 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.039668 B = 0.002685 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.691984 B =10426.670583 C =10483.371742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.114 4.114 3 H 0.093 0.907 4 C -0.150 4.150 5 C 0.041 3.959 6 O -0.343 6.343 7 C 0.057 3.943 8 H 0.094 0.906 9 C 0.521 3.479 10 O -0.522 6.522 11 N -0.724 5.724 12 C 0.133 3.867 13 C -0.127 4.127 14 H 0.088 0.912 15 C -0.143 4.143 16 C 0.166 3.834 17 H 0.075 0.925 18 N -0.713 5.713 19 C -0.245 4.245 20 H 0.070 0.930 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.908 3.092 24 H -0.291 1.291 25 H -0.286 1.286 26 H -0.286 1.286 27 C -0.161 4.161 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.062 0.938 35 H 0.400 0.600 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.061 0.939 40 H 0.385 0.615 41 H 0.256 0.744 42 H 0.053 0.947 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.460 -3.193 -25.469 26.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.133 4.133 3 H 0.111 0.889 4 C -0.188 4.188 5 C -0.036 4.036 6 O -0.261 6.261 7 C -0.004 4.004 8 H 0.111 0.889 9 C 0.305 3.695 10 O -0.396 6.396 11 N -0.377 5.377 12 C 0.010 3.990 13 C -0.146 4.146 14 H 0.106 0.894 15 C -0.182 4.182 16 C 0.054 3.946 17 H 0.093 0.907 18 N -0.351 5.351 19 C -0.376 4.376 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.213 1.213 26 H -0.212 1.212 27 C -0.202 4.202 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.114 0.886 34 H 0.081 0.919 35 H 0.234 0.766 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.220 0.780 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.057 -4.019 -24.959 25.782 hybrid contribution 0.550 1.046 0.505 1.285 sum 5.607 -2.973 -24.454 25.264 Atomic orbital electron populations 1.22024 0.93462 1.03049 1.02835 1.22484 0.97689 0.99821 0.93329 0.88920 1.23047 1.00707 0.97322 0.97730 1.23505 0.96879 0.99262 0.83976 1.89311 1.82956 1.23267 1.30563 1.22989 0.97784 0.85599 0.94038 0.88867 1.20030 0.82847 0.84110 0.82465 1.90739 1.53429 1.30740 1.64732 1.46001 1.44294 1.09626 1.37778 1.21451 0.91058 0.97602 0.88855 1.22641 1.00330 0.94813 0.96809 0.89379 1.23453 0.96714 1.01477 0.96585 1.21516 0.92343 0.95973 0.84796 0.90687 1.42412 1.80685 1.12934 0.99042 1.19253 1.38640 0.91861 0.87893 0.91164 1.24774 1.02318 0.96970 0.96841 1.69653 1.54573 1.22229 1.11557 0.86263 0.78208 0.81586 0.80090 1.21673 1.21251 1.21237 1.23958 0.98344 1.01427 0.96501 0.91345 0.91896 0.91820 0.90147 0.90108 0.88644 0.91944 0.76630 0.91140 0.91698 0.90083 0.91996 0.78046 0.93370 0.92785 0.90322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 8.10 37.16 0.30 -0.99 16 2 C -0.11 -0.81 3.63 -89.06 -0.32 -1.14 16 3 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 4 C -0.15 -0.90 6.74 -25.17 -0.17 -1.07 16 5 C 0.04 0.31 7.63 37.93 0.29 0.59 16 6 O -0.34 -4.20 10.92 -54.44 -0.59 -4.80 16 7 C 0.06 0.58 3.62 -27.11 -0.10 0.48 16 8 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 9 C 0.52 6.82 5.47 -10.98 -0.06 6.76 16 10 O -0.52 -9.38 16.55 -13.66 -0.23 -9.60 16 11 N -0.72 -7.91 4.44 -60.29 -0.27 -8.18 16 12 C 0.13 1.72 5.51 -4.04 -0.02 1.70 16 13 C -0.13 -1.63 3.75 -89.80 -0.34 -1.97 16 14 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 15 C -0.14 -2.23 7.39 -25.92 -0.19 -2.42 16 16 C 0.17 3.16 4.48 -67.12 -0.30 2.86 16 17 H 0.08 1.41 8.10 -51.93 -0.42 0.99 16 18 N -0.71 -17.72 5.40 -52.64 -0.28 -18.01 16 19 C -0.25 -6.76 9.97 -15.06 -0.15 -6.91 16 20 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 22 N -0.93 -28.21 13.06 55.49 0.72 -27.49 16 23 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 C -0.16 -2.60 7.43 -25.91 -0.19 -2.80 16 28 H 0.07 0.61 6.19 -51.92 -0.32 0.29 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.48 7.73 -51.93 -0.40 0.08 16 32 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.40 3.24 8.47 -40.82 -0.35 2.89 16 36 H 0.07 1.06 7.85 -51.93 -0.41 0.66 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.08 1.35 8.08 -51.93 -0.42 0.93 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.39 10.24 7.92 -40.82 -0.32 9.92 16 41 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.08 1.42 7.90 -51.93 -0.41 1.01 16 LS Contribution 348.41 15.07 5.25 5.25 Total: -1.00 -33.84 348.41 -9.02 -42.86 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -7.25 Total: 8.09 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -1.35 Total: -5.37 kcal Atomic # 7 Polarization: -53.85 SS G_CDS: 0.17 Total: -53.68 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -0.82 Total: -14.40 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.84 -9.02 -42.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086200331.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.162 kcal (2) G-P(sol) polarization free energy of solvation -33.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds