Wall clock time and date at job start Tue Mar 31 2020 07:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.45541 * 2 1 4 4 C 1.54506 * 110.51131 * 237.24621 * 2 1 3 5 5 C 1.54471 * 104.06231 * 241.35364 * 4 2 1 6 6 O 1.44521 * 104.88204 * 23.90664 * 5 4 2 7 7 C 1.44423 * 105.21950 * 319.64180 * 6 5 4 8 8 H 1.09007 * 110.37546 * 281.46990 * 7 6 5 9 9 C 1.50699 * 110.37110 * 159.24893 * 7 6 5 10 10 O 1.21286 * 119.99965 * 357.94983 * 9 7 6 11 11 N 1.34783 * 120.00191 * 177.95219 * 9 7 6 12 12 C 1.46503 * 119.99656 * 180.02562 * 11 9 7 13 13 C 1.53003 * 109.46514 * 179.97438 * 12 11 9 14 14 H 1.09003 * 112.85331 * 43.80266 * 13 12 11 15 15 C 1.53784 * 113.61334 * 174.99807 * 13 12 11 16 16 C 1.53780 * 87.08421 * 140.06260 * 15 13 12 17 17 H 1.09000 * 113.61203 * 89.19720 * 16 15 13 18 18 N 1.46496 * 113.61432 * 220.02217 * 16 15 13 19 19 C 1.36945 * 119.99718 * 204.99886 * 18 16 15 20 20 H 1.07997 * 119.99756 * 359.97438 * 19 18 16 21 21 C 1.38805 * 119.99878 * 179.97438 * 19 18 16 22 22 N 1.31624 * 120.00257 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47187 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 300.00154 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00200 * 23 21 19 27 27 C 1.53788 * 113.68853 * 272.52956 * 13 12 11 28 28 H 1.09008 * 109.47195 * 297.39614 * 1 2 3 29 29 H 1.09003 * 109.47318 * 57.39588 * 1 2 3 30 30 H 1.09004 * 109.47046 * 177.39569 * 1 2 3 31 31 H 1.09002 * 110.51158 * 0.02562 * 4 2 1 32 32 H 1.09005 * 110.51162 * 122.57166 * 4 2 1 33 33 H 1.09004 * 110.37194 * 142.81639 * 5 4 2 34 34 H 1.09001 * 110.37373 * 265.14442 * 5 4 2 35 35 H 0.96991 * 119.99611 * 359.97438 * 11 9 7 36 36 H 1.08995 * 109.47697 * 60.00018 * 12 11 9 37 37 H 1.09003 * 109.46832 * 299.99075 * 12 11 9 38 38 H 1.08999 * 113.61131 * 25.51253 * 15 13 12 39 39 H 1.08995 * 113.61397 * 254.61322 * 15 13 12 40 40 H 0.96996 * 120.00499 * 24.99616 * 18 16 15 41 41 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 42 42 H 1.08994 * 113.61154 * 105.46527 * 27 13 12 43 43 H 1.08997 * 113.61469 * 334.55915 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9109 1.0213 0.0000 4 6 2.0714 -0.7829 -1.2170 5 6 2.8757 -1.9429 -0.5895 6 8 2.3090 -2.1171 0.7285 7 6 2.0713 -0.7796 1.2188 8 1 3.0013 -0.3339 1.5719 9 6 1.0479 -0.8005 2.3248 10 8 0.5283 -1.8469 2.6505 11 7 0.7100 0.3436 2.9521 12 6 -0.2845 0.3230 4.0277 13 6 -0.4824 1.7414 4.5663 14 1 -0.5539 2.4883 3.7756 15 6 -1.5979 1.8504 5.6193 16 6 -0.6778 2.8204 6.3792 17 1 -0.8037 3.8624 6.0852 18 7 -0.6989 2.6326 7.8319 19 6 -0.3769 3.6734 8.6616 20 1 -0.1071 4.6325 8.2449 21 6 -0.3975 3.4957 10.0381 22 7 -0.7259 2.3266 10.5459 23 14 0.0424 4.9152 11.1698 24 1 -0.0558 4.4703 12.5831 25 1 1.4298 5.3626 10.8865 26 1 -0.8976 6.0415 10.9395 27 6 0.5026 2.1206 5.6848 28 1 -0.3634 0.4729 0.9125 29 1 -0.3634 0.5537 -0.8657 30 1 -0.3633 -1.0266 -0.0467 31 1 1.2490 -1.1696 -1.8190 32 1 2.7200 -0.1487 -1.8214 33 1 2.7535 -2.8517 -1.1788 34 1 3.9301 -1.6768 -0.5152 35 1 1.1258 1.1803 2.6919 36 1 0.0633 -0.3253 4.8319 37 1 -1.2309 -0.0542 3.6402 38 1 -1.7868 0.9191 6.1531 39 1 -2.5088 2.3165 5.2437 40 1 -0.9410 1.7711 8.2062 41 1 -0.7399 2.2023 11.5078 42 1 1.2872 2.8049 5.3621 43 1 0.8878 1.2632 6.2366 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086200331.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:49 Heat of formation + Delta-G solvation = -79.549731 kcal Electronic energy + Delta-G solvation = -22164.473626 eV Core-core repulsion = 18823.356881 eV Total energy + Delta-G solvation = -3341.116745 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.60649 -40.16640 -39.21517 -36.10905 -35.17933 -34.30912 -32.24347 -31.11130 -28.93019 -27.54852 -26.44523 -25.78412 -23.98875 -22.45765 -22.26720 -21.10511 -20.34896 -19.04166 -18.27616 -17.84104 -17.27095 -16.76967 -16.48221 -16.22002 -15.90045 -15.65141 -15.27727 -14.94638 -14.73223 -14.54579 -14.20054 -13.77581 -13.51839 -13.41186 -13.22847 -13.02185 -12.90664 -12.62349 -12.37683 -12.30632 -12.22384 -12.06943 -11.89186 -11.68904 -11.56742 -11.53148 -11.08789 -10.93616 -10.80161 -10.60200 -10.08394 -8.97030 -7.93716 -5.22266 1.47605 1.50777 1.53992 1.56871 1.92140 2.57521 3.07388 3.37834 3.44463 3.60029 3.74015 3.75928 3.81203 3.94147 4.07711 4.22209 4.26881 4.29420 4.36471 4.43597 4.48430 4.56546 4.63315 4.71789 4.77467 4.84815 4.95853 4.98628 5.00075 5.05905 5.07203 5.14986 5.23394 5.29499 5.35495 5.42826 5.53429 5.74330 5.76705 6.28489 6.54001 7.21639 7.33732 8.12610 8.33922 9.29778 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.039668 B = 0.002685 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.691984 B =10426.670583 C =10483.371742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.108 4.108 3 H 0.128 0.872 4 C -0.144 4.144 5 C 0.032 3.968 6 O -0.388 6.388 7 C 0.055 3.945 8 H 0.119 0.881 9 C 0.517 3.483 10 O -0.581 6.581 11 N -0.707 5.707 12 C 0.139 3.861 13 C -0.092 4.092 14 H 0.127 0.873 15 C -0.139 4.139 16 C 0.143 3.857 17 H 0.083 0.917 18 N -0.731 5.731 19 C -0.242 4.242 20 H 0.081 0.919 21 C -0.081 4.081 22 N -0.974 5.974 23 Si 0.974 3.026 24 H -0.299 1.299 25 H -0.277 1.277 26 H -0.276 1.276 27 C -0.154 4.154 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.032 0.968 31 H 0.076 0.924 32 H 0.110 0.890 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.418 0.582 36 H 0.042 0.958 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.080 0.920 40 H 0.371 0.629 41 H 0.250 0.750 42 H 0.071 0.929 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.591 -0.746 -28.248 29.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.127 4.127 3 H 0.146 0.854 4 C -0.182 4.182 5 C -0.044 4.044 6 O -0.307 6.307 7 C -0.006 4.006 8 H 0.136 0.864 9 C 0.304 3.696 10 O -0.460 6.460 11 N -0.360 5.360 12 C 0.015 3.985 13 C -0.111 4.111 14 H 0.145 0.855 15 C -0.178 4.178 16 C 0.034 3.966 17 H 0.101 0.899 18 N -0.369 5.369 19 C -0.374 4.374 20 H 0.098 0.902 21 C -0.273 4.273 22 N -0.625 5.625 23 Si 0.803 3.197 24 H -0.225 1.225 25 H -0.203 1.203 26 H -0.202 1.202 27 C -0.195 4.195 28 H 0.079 0.921 29 H 0.101 0.899 30 H 0.051 0.949 31 H 0.095 0.905 32 H 0.128 0.872 33 H 0.116 0.884 34 H 0.099 0.901 35 H 0.256 0.744 36 H 0.061 0.939 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.202 0.798 41 H 0.059 0.941 42 H 0.090 0.910 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.214 -1.505 -27.822 28.547 hybrid contribution 0.191 0.258 1.275 1.315 sum 6.406 -1.247 -26.547 27.337 Atomic orbital electron populations 1.22013 0.94603 1.01314 1.03359 1.22572 0.96649 1.01282 0.92178 0.85417 1.23054 1.00854 0.96906 0.97351 1.23764 0.97949 1.00359 0.82326 1.89274 1.83634 1.24909 1.32858 1.23184 0.97722 0.85649 0.94027 0.86394 1.20744 0.82728 0.83451 0.82726 1.90710 1.55741 1.32920 1.66642 1.45802 1.43477 1.10144 1.36605 1.21217 0.91484 0.97080 0.88693 1.22470 0.96864 0.95473 0.96291 0.85511 1.23342 0.97885 0.99809 0.96778 1.21972 0.95105 0.97440 0.82108 0.89868 1.42654 1.81074 1.11738 1.01394 1.19712 1.36535 0.92679 0.88485 0.90160 1.25619 1.03640 0.99444 0.98595 1.69827 1.57001 1.24426 1.11207 0.85198 0.78323 0.78726 0.77455 1.22545 1.20297 1.20174 1.23732 0.98308 1.00381 0.97043 0.92104 0.89853 0.94866 0.90476 0.87184 0.88361 0.90123 0.74427 0.93938 0.91789 0.91810 0.90184 0.79755 0.94135 0.91035 0.92907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 8.10 71.98 0.58 -1.66 16 2 C -0.11 -1.19 3.63 -9.78 -0.04 -1.22 16 3 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 4 C -0.14 -1.28 6.74 31.61 0.21 -1.07 16 5 C 0.03 0.42 7.63 72.48 0.55 0.97 16 6 O -0.39 -9.31 10.92 -130.61 -1.43 -10.73 16 7 C 0.06 1.00 3.62 30.35 0.11 1.11 16 8 H 0.12 1.53 8.14 -2.38 -0.02 1.51 16 9 C 0.52 13.25 5.47 87.66 0.48 13.73 16 10 O -0.58 -21.66 16.55 15.32 0.25 -21.41 16 11 N -0.71 -14.16 4.44 -463.04 -2.06 -16.22 16 12 C 0.14 3.47 5.51 86.38 0.48 3.94 16 13 C -0.09 -2.13 3.75 -10.26 -0.04 -2.17 16 14 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 15 C -0.14 -4.16 7.39 31.12 0.23 -3.93 16 16 C 0.14 5.29 4.48 45.52 0.20 5.50 16 17 H 0.08 2.94 8.10 -2.39 -0.02 2.92 16 18 N -0.73 -36.78 5.40 -320.45 -1.73 -38.51 16 19 C -0.24 -13.35 9.97 84.03 0.84 -12.52 16 20 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 21 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 22 N -0.97 -60.59 13.06 21.65 0.28 -60.31 16 23 Si 0.97 46.08 29.55 68.60 2.03 48.10 16 24 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 25 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 26 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 27 C -0.15 -4.74 7.43 31.13 0.23 -4.51 16 28 H 0.06 0.95 6.19 -2.38 -0.01 0.93 16 29 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.08 0.74 7.73 -2.39 -0.02 0.73 16 32 H 0.11 0.37 8.14 -2.38 -0.02 0.35 16 33 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.42 5.25 8.47 -92.71 -0.79 4.46 16 36 H 0.04 1.32 7.85 -2.39 -0.02 1.30 16 37 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.06 2.15 8.08 -2.39 -0.02 2.13 16 39 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.37 20.43 7.92 -92.71 -0.73 19.70 16 41 H 0.25 15.15 8.31 -92.71 -0.77 14.37 16 42 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.05 1.92 7.90 -2.39 -0.02 1.90 16 Total: -1.00 -77.44 348.41 1.14 -76.30 By element: Atomic # 1 Polarization: 29.33 SS G_CDS: -0.52 Total: 28.82 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: 4.31 Total: -6.04 kcal Atomic # 7 Polarization: -111.53 SS G_CDS: -3.50 Total: -115.04 kcal Atomic # 8 Polarization: -30.97 SS G_CDS: -1.17 Total: -32.14 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.10 kcal Total: -77.44 1.14 -76.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086200331.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.249 kcal (2) G-P(sol) polarization free energy of solvation -77.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds