Wall clock time and date at job start Tue Mar 31 2020 07:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42896 * 114.00542 * 2 1 4 4 C 1.53778 * 113.61860 * 150.00021 * 3 2 1 5 5 C 1.53784 * 87.08121 * 89.11372 * 4 3 2 6 6 C 1.50703 * 113.61473 * 139.98160 * 5 4 3 7 7 O 1.21291 * 119.99497 * 0.02562 * 6 5 4 8 8 N 1.34770 * 120.00202 * 180.27572 * 6 5 4 9 9 C 1.46501 * 119.99927 * 179.72626 * 8 6 5 10 10 H 1.08994 * 110.64206 * 325.69880 * 9 8 6 11 11 C 1.55155 * 110.72283 * 88.84519 * 9 8 6 12 12 C 1.55120 * 101.49082 * 153.73109 * 11 9 8 13 13 N 1.47425 * 104.94000 * 323.22198 * 12 11 9 14 14 C 1.36936 * 125.64812 * 203.96615 * 13 12 11 15 15 H 1.07995 * 120.00062 * 169.89632 * 14 13 12 16 16 C 1.38813 * 119.99795 * 349.89438 * 14 13 12 17 17 N 1.31619 * 119.99985 * 350.46021 * 16 14 13 18 18 Si 1.86801 * 119.99858 * 170.46734 * 16 14 13 19 19 H 1.48496 * 109.47244 * 94.13587 * 18 16 14 20 20 H 1.48497 * 109.46955 * 214.13419 * 18 16 14 21 21 H 1.48505 * 109.46965 * 334.13437 * 18 16 14 22 22 C 1.47018 * 108.70518 * 24.00015 * 13 12 11 23 23 H 1.08998 * 109.88656 * 239.52235 * 22 13 12 24 24 C 1.53011 * 110.01098 * 118.42896 * 22 13 12 25 25 C 1.53778 * 87.08247 * 25.43482 * 5 4 3 26 26 H 1.08997 * 109.47523 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46686 * 300.00896 * 1 2 3 28 28 H 1.09000 * 109.46859 * 59.99680 * 1 2 3 29 29 H 1.08996 * 112.90467 * 18.74558 * 3 2 1 30 30 H 1.09000 * 113.61211 * 334.56432 * 4 3 2 31 31 H 1.09002 * 113.69100 * 203.67461 * 4 3 2 32 32 H 1.09000 * 113.61258 * 270.79846 * 5 4 3 33 33 H 0.97004 * 119.99728 * 359.72314 * 8 6 5 34 34 H 1.09004 * 111.00155 * 271.93924 * 11 9 8 35 35 H 1.09002 * 111.00692 * 35.78612 * 11 9 8 36 36 H 1.09001 * 110.42124 * 204.29443 * 12 11 9 37 37 H 1.09003 * 110.29698 * 82.08603 * 12 11 9 38 38 H 0.97005 * 119.99660 * 180.02562 * 17 16 14 39 39 H 1.08999 * 109.46873 * 302.11242 * 24 22 13 40 40 H 1.08998 * 109.46855 * 62.11416 * 24 22 13 41 41 H 1.08999 * 109.46602 * 182.11656 * 24 22 13 42 42 H 1.09003 * 113.61445 * 89.11395 * 25 5 4 43 43 H 1.08992 * 113.61459 * 220.02007 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.3756 1.3718 0.7045 5 6 4.0062 1.0328 -0.6566 6 6 5.2717 1.7992 -0.9432 7 8 5.6968 2.5935 -0.1311 8 7 5.9284 1.6057 -2.1041 9 6 7.1554 2.3551 -2.3853 10 1 7.0998 3.3570 -1.9596 11 6 8.3973 1.5976 -1.8458 12 6 9.5130 2.1240 -2.7861 13 7 8.8665 2.2603 -4.1040 14 6 9.5081 2.2410 -5.3135 15 1 8.9358 2.1847 -6.2276 16 6 10.8943 2.2940 -5.3647 17 7 11.5838 2.5507 -4.2734 18 14 11.7810 2.0010 -6.9826 19 1 12.0422 3.3032 -7.6468 20 1 13.0699 1.3107 -6.7226 21 1 10.9359 1.1562 -7.8643 22 6 7.4188 2.4212 -3.9045 23 1 6.8834 1.6168 -4.4089 24 6 6.9618 3.7743 -4.4535 25 6 2.7536 1.6487 -1.3019 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.3144 2.0797 0.3227 30 1 3.5170 0.5957 1.4567 31 1 3.6324 2.3664 1.0691 32 1 4.1098 -0.0375 -0.8353 33 1 5.5886 0.9701 -2.7534 34 1 8.5981 1.8654 -0.8084 35 1 8.2744 0.5198 -1.9526 36 1 10.3346 1.4096 -2.8387 37 1 9.8745 3.0920 -2.4390 38 1 12.5525 2.5881 -4.3093 39 1 7.5138 4.5727 -3.9576 40 1 7.1508 3.8137 -5.5262 41 1 5.8952 3.9003 -4.2675 42 1 2.8391 2.7196 -1.4864 43 1 2.3928 1.0962 -2.1693 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088645493.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:39 Heat of formation + Delta-G solvation = -36.519047 kcal Electronic energy + Delta-G solvation = -22633.418489 eV Core-core repulsion = 19294.167695 eV Total energy + Delta-G solvation = -3339.250794 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.46288 -38.84281 -37.46475 -35.68467 -33.94746 -31.96705 -30.36382 -28.81157 -27.35311 -26.12086 -25.89481 -24.22608 -23.95798 -21.10282 -20.14347 -19.96549 -19.24560 -17.52264 -16.75749 -16.29006 -16.03477 -15.59562 -15.38880 -14.75193 -14.65077 -14.06506 -13.90726 -13.74903 -13.31447 -12.79882 -12.70731 -12.44970 -12.16048 -12.09268 -11.93134 -11.63267 -11.53955 -11.10835 -10.97124 -10.89560 -10.74817 -10.64221 -10.54608 -10.35616 -10.05507 -9.85481 -9.81474 -9.64297 -9.40471 -8.64162 -8.53582 -6.83269 -5.74497 -3.08016 2.81661 3.32640 3.39144 3.42975 3.46344 3.48632 4.27434 4.40521 4.49123 4.55241 4.71772 4.97786 5.04800 5.13236 5.15211 5.32273 5.36939 5.44103 5.52579 5.55142 5.58059 5.61929 5.78182 5.84594 5.87696 6.02429 6.14714 6.26629 6.33541 6.36794 6.55179 6.64752 6.71628 6.90290 6.91469 7.14921 7.51102 7.59821 7.78320 7.80807 8.25217 8.48432 9.18396 9.80496 10.47527 11.38172 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.038428 B = 0.003222 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.464262 B = 8687.192508 C = 8957.941242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.369 6.369 3 C 0.061 3.939 4 C -0.116 4.116 5 C -0.130 4.130 6 C 0.520 3.480 7 O -0.545 6.545 8 N -0.714 5.714 9 C 0.135 3.865 10 H 0.092 0.908 11 C -0.155 4.155 12 C 0.174 3.826 13 N -0.594 5.594 14 C -0.227 4.227 15 H 0.076 0.924 16 C -0.006 4.006 17 N -0.916 5.916 18 Si 0.910 3.090 19 H -0.289 1.289 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.155 3.845 23 H 0.035 0.965 24 C -0.154 4.154 25 C -0.141 4.141 26 H 0.086 0.914 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.115 0.885 33 H 0.398 0.602 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.028 0.972 38 H 0.253 0.747 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.036 0.964 42 H 0.094 0.906 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.519 -3.791 7.387 22.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.287 6.287 3 C 0.003 3.997 4 C -0.154 4.154 5 C -0.151 4.151 6 C 0.306 3.694 7 O -0.423 6.423 8 N -0.364 5.364 9 C 0.030 3.970 10 H 0.110 0.890 11 C -0.194 4.194 12 C 0.049 3.951 13 N -0.319 5.319 14 C -0.355 4.355 15 H 0.094 0.906 16 C -0.203 4.203 17 N -0.563 5.563 18 Si 0.740 3.260 19 H -0.216 1.216 20 H -0.216 1.216 21 H -0.206 1.206 22 C 0.047 3.953 23 H 0.053 0.947 24 C -0.213 4.213 25 C -0.179 4.179 26 H 0.104 0.896 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.125 0.875 32 H 0.133 0.867 33 H 0.232 0.768 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.046 0.954 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.055 0.945 42 H 0.112 0.888 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -19.856 -3.382 7.882 21.629 hybrid contribution 0.244 -0.201 -1.267 1.306 sum -19.612 -3.583 6.615 21.006 Atomic orbital electron populations 1.22817 0.80910 1.02806 1.00054 1.87887 1.19723 1.26575 1.94565 1.23091 0.94744 0.85164 0.96730 1.23102 0.92506 1.04002 0.95773 1.22696 0.92134 1.01091 0.99200 1.20428 0.84742 0.82695 0.81542 1.90676 1.68288 1.36663 1.46623 1.46103 1.26747 1.43929 1.19587 1.22120 0.82821 0.95760 0.96276 0.89014 1.23421 0.96785 0.99490 0.99730 1.21436 0.92297 0.98909 0.82450 1.44487 0.99699 1.84922 1.02824 1.18954 0.89111 1.43777 0.83682 0.90642 1.24830 0.96473 1.01698 0.97313 1.69963 1.05895 1.54043 1.26412 0.86142 0.79271 0.77763 0.82793 1.21642 1.21634 1.20624 1.21017 0.88016 0.95148 0.91117 0.94750 1.22227 0.98277 0.99150 1.01693 1.23372 0.94576 1.01762 0.98176 0.89564 0.93944 0.93920 0.90421 0.90188 0.87503 0.86724 0.76806 0.91859 0.92064 0.91084 0.95356 0.93670 0.92926 0.92700 0.94497 0.88761 0.90034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.85 101.05 1.10 1.29 16 2 O -0.37 -3.52 10.63 -35.23 -0.37 -3.90 16 3 C 0.06 0.54 4.37 -25.92 -0.11 0.43 16 4 C -0.12 -1.21 7.24 -25.92 -0.19 -1.40 16 5 C -0.13 -1.44 4.08 -90.96 -0.37 -1.81 16 6 C 0.52 7.68 7.35 -10.99 -0.08 7.60 16 7 O -0.54 -10.09 15.58 5.55 0.09 -10.00 16 8 N -0.71 -10.53 5.19 -52.03 -0.27 -10.80 16 9 C 0.13 2.48 2.79 -66.09 -0.18 2.29 16 10 H 0.09 1.83 7.33 -51.93 -0.38 1.45 16 11 C -0.15 -3.09 6.79 -24.47 -0.17 -3.25 16 12 C 0.17 4.27 5.42 -2.41 -0.01 4.25 16 13 N -0.59 -14.86 3.13 -162.43 -0.51 -15.37 16 14 C -0.23 -6.20 9.85 -15.06 -0.15 -6.35 16 15 H 0.08 2.00 7.85 -52.49 -0.41 1.58 16 16 C -0.01 -0.18 5.40 -17.43 -0.09 -0.27 16 17 N -0.92 -26.86 10.68 55.49 0.59 -26.26 16 18 Si 0.91 21.91 29.56 -169.99 -5.03 16.89 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 22 C 0.16 3.13 3.48 -66.95 -0.23 2.89 16 23 H 0.03 0.67 7.70 -51.93 -0.40 0.27 16 24 C -0.15 -2.91 9.14 37.16 0.34 -2.57 16 25 C -0.14 -1.30 7.46 -25.92 -0.19 -1.49 16 26 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 28 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.08 0.57 7.87 -51.93 -0.41 0.16 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.11 1.20 7.43 -51.93 -0.39 0.82 16 32 H 0.11 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.40 4.93 8.34 -40.82 -0.34 4.59 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.07 1.92 6.94 -51.93 -0.36 1.56 16 37 H 0.03 0.76 8.07 -51.93 -0.42 0.34 16 38 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 39 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.05 1.07 8.05 -51.93 -0.42 0.65 16 41 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.09 0.88 8.09 -51.93 -0.42 0.46 16 43 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 347.73 15.07 5.24 5.24 Total: -1.00 -31.90 347.73 -7.92 -39.82 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -7.31 Total: 2.77 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -0.35 Total: 1.62 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: -0.19 Total: -52.43 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -0.29 Total: -13.90 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.90 -7.92 -39.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088645493.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.299 kcal (2) G-P(sol) polarization free energy of solvation -31.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds