Wall clock time and date at job start Tue Mar 31 2020 07:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 110.45670 * 2 1 4 4 C 1.54513 * 110.50868 * 237.24815 * 2 1 3 5 5 C 1.54480 * 104.06196 * 241.35168 * 4 2 1 6 6 O 1.44518 * 104.87656 * 23.90673 * 5 4 2 7 7 C 1.44426 * 105.22725 * 319.64049 * 6 5 4 8 8 H 1.08997 * 110.37064 * 281.47578 * 7 6 5 9 9 C 1.50698 * 110.37478 * 159.25120 * 7 6 5 10 10 O 1.21284 * 120.00121 * 357.94616 * 9 7 6 11 11 N 1.34780 * 120.00205 * 177.95197 * 9 7 6 12 12 C 1.46495 * 120.00279 * 179.97438 * 11 9 7 13 13 H 1.09005 * 110.63992 * 328.14349 * 12 11 9 14 14 C 1.55156 * 110.71990 * 91.47627 * 12 11 9 15 15 C 1.54913 * 101.58063 * 153.86727 * 14 12 11 16 16 N 1.47738 * 104.90228 * 323.04668 * 15 14 12 17 17 C 1.36936 * 125.81865 * 204.10392 * 16 15 14 18 18 H 1.07996 * 120.00073 * 168.87925 * 17 16 15 19 19 C 1.38811 * 120.00002 * 348.87288 * 17 16 15 20 20 N 1.31618 * 119.99862 * 350.26962 * 19 17 16 21 21 Si 1.86794 * 120.00067 * 170.27577 * 19 17 16 22 22 H 1.48504 * 109.47719 * 94.66340 * 21 19 17 23 23 H 1.48503 * 109.47313 * 214.66740 * 21 19 17 24 24 H 1.48505 * 109.47018 * 334.66346 * 21 19 17 25 25 C 1.47023 * 108.53094 * 24.00836 * 16 15 14 26 26 H 1.09002 * 109.88206 * 239.57886 * 25 16 15 27 27 C 1.52997 * 109.88237 * 118.56735 * 25 16 15 28 28 H 1.09000 * 109.46985 * 297.39730 * 1 2 3 29 29 H 1.09006 * 109.47492 * 57.38982 * 1 2 3 30 30 H 1.08996 * 109.47405 * 177.39840 * 1 2 3 31 31 H 1.09000 * 110.51115 * 359.97438 * 4 2 1 32 32 H 1.09003 * 110.51117 * 122.57637 * 4 2 1 33 33 H 1.09004 * 110.37075 * 142.80649 * 5 4 2 34 34 H 1.08997 * 110.37137 * 265.04074 * 5 4 2 35 35 H 0.97001 * 120.00091 * 0.02562 * 11 9 7 36 36 H 1.09004 * 111.00683 * 271.93873 * 14 12 11 37 37 H 1.08999 * 111.00123 * 35.75714 * 14 12 11 38 38 H 1.08998 * 110.36650 * 81.83474 * 15 14 12 39 39 H 1.08997 * 110.36637 * 204.15117 * 15 14 12 40 40 H 0.97010 * 119.99889 * 179.97438 * 20 19 17 41 41 H 1.09008 * 109.46880 * 301.71429 * 27 25 16 42 42 H 1.09000 * 109.47370 * 61.71409 * 27 25 16 43 43 H 1.08999 * 109.47449 * 181.71364 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9109 1.0213 0.0000 4 6 2.0713 -0.7829 -1.2171 5 6 2.8757 -1.9430 -0.5896 6 8 2.3090 -2.1171 0.7283 7 6 2.0712 -0.7796 1.2188 8 1 3.0013 -0.3340 1.5717 9 6 1.0479 -0.8006 2.3248 10 8 0.5282 -1.8469 2.6505 11 7 0.7101 0.3435 2.9521 12 6 -0.2851 0.3233 4.0270 13 1 -1.0264 -0.4559 3.8496 14 6 0.3999 0.1311 5.4058 15 6 -0.6237 0.7992 6.3574 16 7 -1.1409 1.9603 5.6044 17 6 -1.6904 3.0894 6.1505 18 1 -1.8743 3.9545 5.5308 19 6 -2.0111 3.1220 7.5007 20 7 -1.9689 2.0167 8.2140 21 14 -2.5029 4.7345 8.3052 22 1 -3.9830 4.8560 8.3065 23 1 -2.0026 4.7631 9.7031 24 1 -1.9140 5.8665 7.5455 25 6 -0.9648 1.7016 4.1678 26 1 -0.3334 2.4730 3.7269 27 6 -2.3271 1.6836 3.4716 28 1 -0.3633 0.4729 0.9124 29 1 -0.3634 0.5538 -0.8657 30 1 -0.3634 -1.0265 -0.0466 31 1 1.2489 -1.1703 -1.8185 32 1 2.7199 -0.1487 -1.8214 33 1 2.7533 -2.8518 -1.1789 34 1 3.9303 -1.6776 -0.5171 35 1 1.1254 1.1805 2.6914 36 1 0.5177 -0.9271 5.6395 37 1 1.3600 0.6459 5.4402 38 1 -1.4338 0.1077 6.5891 39 1 -0.1319 1.1288 7.2726 40 1 -2.1927 2.0395 9.1576 41 1 -2.9571 0.9187 3.9256 42 1 -2.8034 2.6580 3.5799 43 1 -2.1913 1.4613 2.4131 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088865105.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:31 Heat of formation + Delta-G solvation = -58.482713 kcal Electronic energy + Delta-G solvation = -23369.586061 eV Core-core repulsion = 20029.382851 eV Total energy + Delta-G solvation = -3340.203210 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.60174 -38.78523 -37.29105 -34.28193 -33.46333 -31.99985 -30.48280 -30.17173 -28.60553 -27.07745 -24.78598 -23.99246 -23.04749 -21.44635 -20.37171 -20.08709 -19.45258 -17.16723 -16.94098 -16.72348 -16.12672 -15.40982 -14.94281 -14.79219 -14.48256 -13.95659 -13.82198 -13.54705 -13.39198 -12.87841 -12.82508 -12.65570 -12.11097 -12.04094 -11.70582 -11.56350 -11.46334 -11.16312 -11.09727 -11.05024 -10.92338 -10.76529 -10.60095 -10.38847 -10.07831 -10.04281 -9.83885 -9.65356 -9.44064 -8.66736 -8.56302 -6.84016 -5.76003 -3.09626 2.74265 3.00490 3.38432 3.44260 3.46137 3.91302 4.19924 4.44339 4.48778 4.56592 4.81517 4.86922 5.04409 5.15791 5.29578 5.31891 5.40933 5.42467 5.45705 5.52065 5.58793 5.65442 5.72398 5.81422 5.82550 6.09824 6.12601 6.23088 6.31513 6.35153 6.47426 6.51824 6.62673 6.69601 6.89543 7.12701 7.47811 7.58085 7.71136 7.76700 8.23060 8.41111 9.16291 9.78854 10.46336 11.37005 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.038010 B = 0.003819 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.467357 B = 7329.397358 C = 7683.847570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.114 4.114 3 H 0.092 0.908 4 C -0.150 4.150 5 C 0.041 3.959 6 O -0.343 6.343 7 C 0.058 3.942 8 H 0.092 0.908 9 C 0.523 3.477 10 O -0.522 6.522 11 N -0.715 5.715 12 C 0.137 3.863 13 H 0.095 0.905 14 C -0.155 4.155 15 C 0.174 3.826 16 N -0.594 5.594 17 C -0.228 4.228 18 H 0.076 0.924 19 C -0.005 4.005 20 N -0.915 5.915 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.155 3.845 26 H 0.035 0.965 27 C -0.154 4.154 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.061 0.939 35 H 0.397 0.603 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.031 0.969 39 H 0.069 0.931 40 H 0.253 0.747 41 H 0.052 0.948 42 H 0.054 0.946 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.472 -2.957 -17.966 20.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.133 4.133 3 H 0.110 0.890 4 C -0.188 4.188 5 C -0.036 4.036 6 O -0.261 6.261 7 C -0.004 4.004 8 H 0.110 0.890 9 C 0.308 3.692 10 O -0.397 6.397 11 N -0.367 5.367 12 C 0.033 3.967 13 H 0.113 0.887 14 C -0.195 4.195 15 C 0.049 3.951 16 N -0.319 5.319 17 C -0.356 4.356 18 H 0.093 0.907 19 C -0.202 4.202 20 N -0.562 5.562 21 Si 0.740 3.260 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.206 1.206 25 C 0.047 3.953 26 H 0.052 0.948 27 C -0.214 4.214 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.112 0.888 34 H 0.079 0.921 35 H 0.232 0.768 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.049 0.951 39 H 0.087 0.913 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 8.966 -3.872 -17.386 19.941 hybrid contribution -0.033 1.428 0.219 1.445 sum 8.933 -2.445 -17.167 19.506 Atomic orbital electron populations 1.22036 0.93351 1.03036 1.03051 1.22479 0.97805 0.99762 0.93238 0.88968 1.23047 1.00649 0.97298 0.97781 1.23489 0.96811 0.99211 0.84103 1.89307 1.82921 1.23401 1.30455 1.22995 0.97813 0.85430 0.94147 0.89013 1.19953 0.82822 0.84240 0.82218 1.90725 1.53352 1.30680 1.64915 1.46019 1.43741 1.09432 1.37526 1.22135 0.89936 0.98951 0.85687 0.88702 1.23396 0.99801 1.00538 0.95759 1.21438 0.92589 0.87763 0.93313 1.44549 1.71153 1.18025 0.98195 1.18941 1.34537 0.89657 0.92497 0.90652 1.24832 1.01066 0.97152 0.97157 1.69961 1.53866 1.24965 1.07372 0.86153 0.78114 0.82905 0.78852 1.21634 1.21642 1.20619 1.21012 0.94130 0.92261 0.87861 0.94771 1.22235 0.99258 1.02115 0.97772 0.91049 0.91977 0.91855 0.90183 0.90208 0.88762 0.92065 0.76847 0.91810 0.91971 0.95142 0.91275 0.93659 0.92890 0.92658 0.94511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 8.10 37.15 0.30 -1.34 16 2 C -0.11 -1.01 3.63 -89.05 -0.32 -1.33 16 3 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.15 -1.11 6.74 -25.16 -0.17 -1.27 16 5 C 0.04 0.35 7.63 37.93 0.29 0.64 16 6 O -0.34 -4.65 10.92 -54.44 -0.59 -5.25 16 7 C 0.06 0.67 3.62 -27.11 -0.10 0.58 16 8 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 9 C 0.52 8.00 5.47 -10.99 -0.06 7.94 16 10 O -0.52 -10.42 16.20 -13.65 -0.22 -10.64 16 11 N -0.71 -10.18 4.06 -52.03 -0.21 -10.39 16 12 C 0.14 2.46 2.84 -66.10 -0.19 2.27 16 13 H 0.09 1.87 7.26 -51.93 -0.38 1.50 16 14 C -0.16 -3.03 6.77 -24.58 -0.17 -3.20 16 15 C 0.17 4.19 5.42 -2.35 -0.01 4.18 16 16 N -0.59 -14.59 3.14 -162.32 -0.51 -15.10 16 17 C -0.23 -6.15 9.83 -15.06 -0.15 -6.29 16 18 H 0.08 1.97 7.85 -52.49 -0.41 1.55 16 19 C -0.01 -0.14 5.40 -17.43 -0.09 -0.23 16 20 N -0.92 -26.60 10.76 55.49 0.60 -26.00 16 21 Si 0.91 21.71 29.56 -169.99 -5.03 16.68 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 C 0.16 3.05 3.47 -66.96 -0.23 2.82 16 26 H 0.03 0.64 7.72 -51.93 -0.40 0.24 16 27 C -0.15 -2.86 9.13 37.16 0.34 -2.52 16 28 H 0.07 0.84 6.19 -51.93 -0.32 0.52 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.08 0.59 7.73 -51.93 -0.40 0.19 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.40 4.55 8.37 -40.82 -0.34 4.21 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.03 0.80 8.05 -51.93 -0.42 0.39 16 39 H 0.07 1.84 7.04 -51.93 -0.37 1.47 16 40 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 41 H 0.05 1.06 8.14 -51.92 -0.42 0.63 16 42 H 0.05 1.06 8.03 -51.93 -0.42 0.65 16 43 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 340.12 15.07 5.13 5.13 Total: -1.00 -32.70 340.12 -8.64 -41.34 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -7.24 Total: 2.00 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -0.56 Total: 2.23 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: -0.12 Total: -51.49 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.82 Total: -15.89 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.70 -8.64 -41.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088865105.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.146 kcal (2) G-P(sol) polarization free energy of solvation -32.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds