Wall clock time and date at job start Tue Mar 31 2020 07:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 110.45670 * 2 1 4 4 C 1.54513 * 110.50868 * 237.24815 * 2 1 3 5 5 C 1.54480 * 104.06196 * 241.35168 * 4 2 1 6 6 O 1.44518 * 104.87656 * 23.90673 * 5 4 2 7 7 C 1.44426 * 105.22725 * 319.64049 * 6 5 4 8 8 H 1.08997 * 110.37064 * 281.47578 * 7 6 5 9 9 C 1.50698 * 110.37478 * 159.25120 * 7 6 5 10 10 O 1.21284 * 120.00121 * 357.94616 * 9 7 6 11 11 N 1.34780 * 120.00205 * 177.95197 * 9 7 6 12 12 C 1.46495 * 120.00279 * 179.97438 * 11 9 7 13 13 H 1.09005 * 110.63992 * 328.14349 * 12 11 9 14 14 C 1.55156 * 110.71990 * 91.47627 * 12 11 9 15 15 C 1.54913 * 101.58063 * 153.86727 * 14 12 11 16 16 N 1.47738 * 104.90228 * 323.04668 * 15 14 12 17 17 C 1.36936 * 125.81865 * 204.10392 * 16 15 14 18 18 H 1.07996 * 120.00073 * 168.87925 * 17 16 15 19 19 C 1.38811 * 120.00002 * 348.87288 * 17 16 15 20 20 N 1.31618 * 119.99862 * 350.26962 * 19 17 16 21 21 Si 1.86794 * 120.00067 * 170.27577 * 19 17 16 22 22 H 1.48504 * 109.47719 * 94.66340 * 21 19 17 23 23 H 1.48503 * 109.47313 * 214.66740 * 21 19 17 24 24 H 1.48505 * 109.47018 * 334.66346 * 21 19 17 25 25 C 1.47023 * 108.53094 * 24.00836 * 16 15 14 26 26 H 1.09002 * 109.88206 * 239.57886 * 25 16 15 27 27 C 1.52997 * 109.88237 * 118.56735 * 25 16 15 28 28 H 1.09000 * 109.46985 * 297.39730 * 1 2 3 29 29 H 1.09006 * 109.47492 * 57.38982 * 1 2 3 30 30 H 1.08996 * 109.47405 * 177.39840 * 1 2 3 31 31 H 1.09000 * 110.51115 * 359.97438 * 4 2 1 32 32 H 1.09003 * 110.51117 * 122.57637 * 4 2 1 33 33 H 1.09004 * 110.37075 * 142.80649 * 5 4 2 34 34 H 1.08997 * 110.37137 * 265.04074 * 5 4 2 35 35 H 0.97001 * 120.00091 * 0.02562 * 11 9 7 36 36 H 1.09004 * 111.00683 * 271.93873 * 14 12 11 37 37 H 1.08999 * 111.00123 * 35.75714 * 14 12 11 38 38 H 1.08998 * 110.36650 * 81.83474 * 15 14 12 39 39 H 1.08997 * 110.36637 * 204.15117 * 15 14 12 40 40 H 0.97010 * 119.99889 * 179.97438 * 20 19 17 41 41 H 1.09008 * 109.46880 * 301.71429 * 27 25 16 42 42 H 1.09000 * 109.47370 * 61.71409 * 27 25 16 43 43 H 1.08999 * 109.47449 * 181.71364 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9109 1.0213 0.0000 4 6 2.0713 -0.7829 -1.2171 5 6 2.8757 -1.9430 -0.5896 6 8 2.3090 -2.1171 0.7283 7 6 2.0712 -0.7796 1.2188 8 1 3.0013 -0.3340 1.5717 9 6 1.0479 -0.8006 2.3248 10 8 0.5282 -1.8469 2.6505 11 7 0.7101 0.3435 2.9521 12 6 -0.2851 0.3233 4.0270 13 1 -1.0264 -0.4559 3.8496 14 6 0.3999 0.1311 5.4058 15 6 -0.6237 0.7992 6.3574 16 7 -1.1409 1.9603 5.6044 17 6 -1.6904 3.0894 6.1505 18 1 -1.8743 3.9545 5.5308 19 6 -2.0111 3.1220 7.5007 20 7 -1.9689 2.0167 8.2140 21 14 -2.5029 4.7345 8.3052 22 1 -3.9830 4.8560 8.3065 23 1 -2.0026 4.7631 9.7031 24 1 -1.9140 5.8665 7.5455 25 6 -0.9648 1.7016 4.1678 26 1 -0.3334 2.4730 3.7269 27 6 -2.3271 1.6836 3.4716 28 1 -0.3633 0.4729 0.9124 29 1 -0.3634 0.5538 -0.8657 30 1 -0.3634 -1.0265 -0.0466 31 1 1.2489 -1.1703 -1.8185 32 1 2.7199 -0.1487 -1.8214 33 1 2.7533 -2.8518 -1.1789 34 1 3.9303 -1.6776 -0.5171 35 1 1.1254 1.1805 2.6914 36 1 0.5177 -0.9271 5.6395 37 1 1.3600 0.6459 5.4402 38 1 -1.4338 0.1077 6.5891 39 1 -0.1319 1.1288 7.2726 40 1 -2.1927 2.0395 9.1576 41 1 -2.9571 0.9187 3.9256 42 1 -2.8034 2.6580 3.5799 43 1 -2.1913 1.4613 2.4131 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088865105.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:30 Heat of formation + Delta-G solvation = -80.155817 kcal Electronic energy + Delta-G solvation = -23370.525878 eV Core-core repulsion = 20029.382851 eV Total energy + Delta-G solvation = -3341.143027 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.64262 -40.02694 -38.77924 -35.69207 -34.56028 -33.67534 -32.09017 -31.22568 -30.19883 -28.05462 -26.35645 -25.82518 -23.92999 -22.42223 -21.96155 -21.51396 -20.76941 -18.69092 -18.20158 -17.71363 -17.49403 -16.69176 -16.30934 -16.04030 -15.80140 -15.59384 -15.11744 -14.63477 -14.53310 -14.24085 -14.02075 -13.87576 -13.69775 -13.49179 -13.20101 -12.89978 -12.80661 -12.59210 -12.37160 -12.28832 -12.23767 -12.08501 -11.93725 -11.85475 -11.65041 -11.61103 -11.52698 -10.92749 -10.69402 -10.57855 -10.00980 -8.85936 -7.85079 -5.20412 1.48872 1.49675 1.57330 1.59260 1.88438 2.52406 3.09515 3.35680 3.43989 3.56196 3.69103 3.83330 3.84803 3.91699 4.09310 4.21581 4.25670 4.31727 4.50039 4.50230 4.63013 4.63894 4.66601 4.73442 4.81581 4.87088 4.94324 4.98616 5.04286 5.09309 5.12892 5.18337 5.31258 5.38265 5.48263 5.55970 5.62039 5.69846 5.79799 6.21320 6.56548 7.08234 7.24517 7.77303 8.44549 9.27515 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.038010 B = 0.003819 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.467357 B = 7329.397358 C = 7683.847570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.109 4.109 3 H 0.127 0.873 4 C -0.143 4.143 5 C 0.033 3.967 6 O -0.386 6.386 7 C 0.058 3.942 8 H 0.122 0.878 9 C 0.522 3.478 10 O -0.576 6.576 11 N -0.698 5.698 12 C 0.154 3.846 13 H 0.074 0.926 14 C -0.140 4.140 15 C 0.182 3.818 16 N -0.612 5.612 17 C -0.231 4.231 18 H 0.086 0.914 19 C -0.065 4.065 20 N -0.951 5.951 21 Si 0.975 3.025 22 H -0.290 1.290 23 H -0.297 1.297 24 H -0.264 1.264 25 C 0.153 3.847 26 H 0.060 0.940 27 C -0.146 4.146 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.033 0.967 31 H 0.076 0.924 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.416 0.584 36 H 0.063 0.937 37 H 0.078 0.922 38 H -0.006 1.006 39 H 0.037 0.963 40 H 0.246 0.754 41 H 0.028 0.972 42 H 0.048 0.952 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.233 -1.005 -20.844 23.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.127 4.127 3 H 0.145 0.855 4 C -0.181 4.181 5 C -0.043 4.043 6 O -0.305 6.305 7 C -0.002 4.002 8 H 0.139 0.861 9 C 0.309 3.691 10 O -0.454 6.454 11 N -0.351 5.351 12 C 0.049 3.951 13 H 0.092 0.908 14 C -0.180 4.180 15 C 0.056 3.944 16 N -0.338 5.338 17 C -0.360 4.360 18 H 0.103 0.897 19 C -0.259 4.259 20 N -0.599 5.599 21 Si 0.804 3.196 22 H -0.217 1.217 23 H -0.224 1.224 24 H -0.189 1.189 25 C 0.046 3.954 26 H 0.078 0.922 27 C -0.205 4.205 28 H 0.075 0.925 29 H 0.101 0.899 30 H 0.053 0.947 31 H 0.095 0.905 32 H 0.129 0.871 33 H 0.117 0.883 34 H 0.101 0.899 35 H 0.254 0.746 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.012 0.988 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.047 0.953 42 H 0.067 0.933 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.757 -1.878 -20.333 23.079 hybrid contribution -0.582 0.760 1.039 1.413 sum 10.176 -1.118 -19.293 21.841 Atomic orbital electron populations 1.22022 0.94864 1.01327 1.03220 1.22573 0.96446 1.01336 0.92395 0.85510 1.23050 1.00844 0.96932 0.97232 1.23762 0.97973 1.00287 0.82293 1.89272 1.83628 1.24752 1.32845 1.23152 0.97641 0.85687 0.93764 0.86066 1.20743 0.82676 0.83232 0.82415 1.90705 1.55441 1.32674 1.66623 1.45741 1.42757 1.10414 1.36221 1.21656 0.90078 0.97403 0.86003 0.90774 1.23209 0.99159 1.00110 0.95523 1.21144 0.92313 0.87440 0.93477 1.44793 1.71004 1.17479 1.00509 1.19346 1.33256 0.90652 0.92784 0.89653 1.25661 1.02070 1.00164 0.97975 1.70169 1.55654 1.27031 1.07095 0.85113 0.77434 0.79636 0.77424 1.21739 1.22398 1.18863 1.21206 0.95235 0.93578 0.85343 0.92247 1.22125 0.97931 1.00903 0.99566 0.92501 0.89901 0.94729 0.90534 0.87110 0.88317 0.89950 0.74603 0.91853 0.90321 0.98814 0.94429 0.94457 0.95258 0.93325 0.91056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 8.10 71.98 0.58 -2.30 16 2 C -0.11 -1.51 3.63 -9.78 -0.04 -1.54 16 3 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 4 C -0.14 -1.55 6.74 31.61 0.21 -1.33 16 5 C 0.03 0.48 7.63 72.49 0.55 1.03 16 6 O -0.39 -9.89 10.92 -130.62 -1.43 -11.31 16 7 C 0.06 1.21 3.62 30.35 0.11 1.32 16 8 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 9 C 0.52 15.28 5.47 87.66 0.48 15.76 16 10 O -0.58 -23.28 16.20 15.32 0.25 -23.04 16 11 N -0.70 -18.39 4.06 -436.92 -1.77 -20.17 16 12 C 0.15 5.45 2.84 46.18 0.13 5.58 16 13 H 0.07 2.98 7.26 -2.38 -0.02 2.97 16 14 C -0.14 -5.50 6.77 31.99 0.22 -5.29 16 15 C 0.18 9.11 5.42 86.80 0.47 9.58 16 16 N -0.61 -30.29 3.14 -667.47 -2.10 -32.39 16 17 C -0.23 -12.47 9.83 84.03 0.83 -11.64 16 18 H 0.09 4.34 7.85 -2.91 -0.02 4.32 16 19 C -0.07 -3.67 5.40 84.86 0.46 -3.21 16 20 N -0.95 -57.35 10.76 21.65 0.23 -57.12 16 21 Si 0.98 45.02 29.56 68.60 2.03 47.05 16 22 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 23 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 24 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 25 C 0.15 5.81 3.47 45.34 0.16 5.96 16 26 H 0.06 2.02 7.72 -2.39 -0.02 2.00 16 27 C -0.15 -5.25 9.13 71.98 0.66 -4.60 16 28 H 0.06 1.19 6.19 -2.39 -0.01 1.18 16 29 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.08 0.90 7.73 -2.39 -0.02 0.88 16 32 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.42 7.97 8.37 -92.71 -0.78 7.19 16 36 H 0.06 2.49 8.14 -2.38 -0.02 2.47 16 37 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 38 H -0.01 -0.35 8.05 -2.39 -0.02 -0.37 16 39 H 0.04 2.09 7.04 -2.39 -0.02 2.07 16 40 H 0.25 14.51 8.31 -92.70 -0.77 13.74 16 41 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 42 H 0.05 1.80 8.03 -2.39 -0.02 1.78 16 43 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -74.94 340.12 2.25 -72.70 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 0.21 Total: 14.96 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: 4.82 Total: 9.32 kcal Atomic # 7 Polarization: -106.04 SS G_CDS: -3.64 Total: -109.68 kcal Atomic # 8 Polarization: -33.17 SS G_CDS: -1.18 Total: -34.35 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -74.94 2.25 -72.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088865105.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.458 kcal (2) G-P(sol) polarization free energy of solvation -74.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds