Wall clock time and date at job start Tue Mar 31 2020 06:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.86852 * 2 1 4 4 C 1.54100 * 109.87950 * 238.99594 * 2 1 3 5 5 C 1.54817 * 104.18606 * 238.39547 * 4 2 1 6 6 C 1.54998 * 102.12466 * 339.09929 * 5 4 2 7 7 H 1.08997 * 110.62197 * 278.54323 * 6 5 4 8 8 C 1.50696 * 110.61941 * 155.53916 * 6 5 4 9 9 O 1.21276 * 120.00527 * 245.00081 * 8 6 5 10 10 N 1.34784 * 119.99721 * 65.00300 * 8 6 5 11 11 C 1.46498 * 119.99937 * 180.02562 * 10 8 6 12 12 H 1.09004 * 110.64156 * 323.31047 * 11 10 8 13 13 C 1.55149 * 110.72367 * 86.45549 * 11 10 8 14 14 C 1.54902 * 101.58815 * 153.86562 * 13 11 10 15 15 N 1.47430 * 104.82839 * 322.98942 * 14 13 11 16 16 C 1.36936 * 125.64789 * 204.08810 * 15 14 13 17 17 H 1.08004 * 119.99643 * 180.02562 * 16 15 14 18 18 C 1.38809 * 120.00031 * 0.03180 * 16 15 14 19 19 N 1.31619 * 120.00411 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99889 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47104 * 59.99888 * 20 18 16 22 22 H 1.48500 * 109.47162 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47408 * 299.99740 * 20 18 16 24 24 C 1.47020 * 108.70081 * 24.12870 * 15 14 13 25 25 H 1.09003 * 109.87875 * 239.52027 * 24 15 14 26 26 C 1.52999 * 109.88397 * 118.36003 * 24 15 14 27 27 O 1.43746 * 110.00491 * 121.08478 * 2 1 3 28 28 H 1.08999 * 109.47436 * 181.00407 * 1 2 3 29 29 H 1.09005 * 109.47578 * 301.00283 * 1 2 3 30 30 H 1.09000 * 109.47518 * 61.00584 * 1 2 3 31 31 H 1.08991 * 110.48958 * 119.72262 * 4 2 1 32 32 H 1.08998 * 110.49031 * 357.06904 * 4 2 1 33 33 H 1.09002 * 110.90844 * 97.31763 * 5 4 2 34 34 H 1.08997 * 110.90682 * 220.88854 * 5 4 2 35 35 H 0.96994 * 120.00052 * 359.97438 * 10 8 6 36 36 H 1.09003 * 111.00423 * 271.94173 * 13 11 10 37 37 H 1.08998 * 111.00452 * 35.78639 * 13 11 10 38 38 H 1.09004 * 110.37194 * 81.82438 * 14 13 11 39 39 H 1.08995 * 110.37460 * 204.04677 * 14 13 11 40 40 H 0.96997 * 120.00308 * 180.02562 * 19 18 16 41 41 H 1.09007 * 109.46927 * 302.18988 * 26 24 15 42 42 H 1.09004 * 109.47626 * 62.18787 * 26 24 15 43 43 H 1.09001 * 109.47746 * 182.18832 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 6 2.0539 -0.7465 -1.2421 5 6 2.9227 -1.8882 -0.6602 6 6 3.2426 -1.3614 0.7619 7 1 4.0716 -0.6543 0.7319 8 6 3.5515 -2.5043 1.6942 9 8 2.8180 -2.7379 2.6313 10 7 4.6433 -3.2670 1.4866 11 6 4.9433 -4.3785 2.3926 12 1 4.6823 -4.1191 3.4186 13 6 4.2018 -5.6661 1.9462 14 6 5.1206 -6.7708 2.5251 15 7 6.4893 -6.2491 2.3580 16 6 7.6280 -7.0058 2.2810 17 1 8.5879 -6.5261 2.1583 18 6 7.5486 -8.3894 2.3607 19 7 6.3789 -8.9739 2.5106 20 14 9.1018 -9.4217 2.2550 21 1 10.0190 -9.0506 3.3624 22 1 8.7489 -10.8598 2.3661 23 1 9.7725 -9.1752 0.9532 24 6 6.4293 -4.7817 2.2885 25 1 6.8410 -4.4384 1.3395 26 6 7.2163 -4.1732 3.4510 27 8 2.0217 -0.6974 1.1568 28 1 -0.3634 -1.0275 0.0180 29 1 -0.3634 0.5293 0.8809 30 1 -0.3634 0.4981 -0.8988 31 1 2.6597 -0.0826 -1.8588 32 1 1.2248 -1.1546 -1.8200 33 1 2.3591 -2.8200 -0.6122 34 1 3.8355 -2.0173 -1.2416 35 1 5.2298 -3.0805 0.7370 36 1 3.2059 -5.7160 2.3864 37 1 4.1505 -5.7305 0.8593 38 1 4.9021 -6.9313 3.5809 39 1 4.9960 -7.6989 1.9673 40 1 6.3234 -9.9407 2.5666 41 1 6.8101 -4.5372 4.3947 42 1 8.2643 -4.4620 3.3710 43 1 7.1352 -3.0868 3.4154 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088869814.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:40 Heat of formation + Delta-G solvation = -60.004138 kcal Electronic energy + Delta-G solvation = -22935.734004 eV Core-core repulsion = 19595.464819 eV Total energy + Delta-G solvation = -3340.269184 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.36678 -38.88707 -37.34696 -34.06534 -32.56920 -32.32943 -31.49612 -30.36857 -28.71956 -26.88323 -24.54185 -23.99190 -22.88565 -21.22991 -20.62872 -20.09465 -19.58484 -17.26272 -16.84776 -16.77460 -16.13299 -15.55356 -14.84036 -14.63994 -14.47083 -13.93282 -13.69448 -13.60268 -13.30726 -12.85379 -12.74976 -12.55262 -12.19465 -12.12917 -11.91305 -11.78136 -11.57105 -11.16422 -11.14106 -10.98855 -10.85853 -10.82968 -10.52247 -10.39468 -10.12869 -10.02701 -9.76999 -9.60702 -9.40993 -8.68999 -8.60983 -6.88670 -5.66178 -3.09352 2.74084 2.95768 3.39143 3.43574 3.45022 3.85610 4.24073 4.44339 4.49036 4.60715 4.73021 4.86278 5.03535 5.12568 5.23986 5.30087 5.39099 5.41481 5.47079 5.54209 5.60693 5.63460 5.73979 5.78524 5.81828 5.94370 6.11479 6.24768 6.31122 6.34873 6.53637 6.58144 6.66523 6.72850 6.86569 7.11628 7.51620 7.61093 7.71765 7.84669 8.33601 8.41849 9.19577 9.80512 10.44477 11.37039 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.037674 B = 0.003435 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.034234 B = 8149.742515 C = 8229.088686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.068 3.932 3 H 0.069 0.931 4 C -0.150 4.150 5 C -0.144 4.144 6 C 0.060 3.940 7 H 0.094 0.906 8 C 0.517 3.483 9 O -0.522 6.522 10 N -0.713 5.713 11 C 0.137 3.863 12 H 0.092 0.908 13 C -0.153 4.153 14 C 0.153 3.847 15 N -0.595 5.595 16 C -0.222 4.222 17 H 0.077 0.923 18 C -0.010 4.010 19 N -0.921 5.921 20 Si 0.914 3.086 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.156 3.844 25 H 0.036 0.964 26 C -0.156 4.156 27 O -0.344 6.344 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.397 0.603 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.014 0.986 39 H 0.109 0.891 40 H 0.253 0.747 41 H 0.052 0.948 42 H 0.054 0.946 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.934 17.004 -8.566 20.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.010 3.990 3 H 0.087 0.913 4 C -0.188 4.188 5 C -0.182 4.182 6 C -0.002 4.002 7 H 0.112 0.888 8 C 0.301 3.699 9 O -0.397 6.397 10 N -0.365 5.365 11 C 0.032 3.968 12 H 0.110 0.890 13 C -0.192 4.192 14 C 0.028 3.972 15 N -0.320 5.320 16 C -0.350 4.350 17 H 0.095 0.905 18 C -0.205 4.205 19 N -0.569 5.569 20 Si 0.745 3.255 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.048 3.952 25 H 0.054 0.946 26 C -0.215 4.215 27 O -0.263 6.263 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.231 0.769 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.032 0.968 39 H 0.127 0.873 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -7.521 16.583 -7.651 19.751 hybrid contribution 1.241 -0.373 -0.531 1.400 sum -6.281 16.210 -8.182 19.213 Atomic orbital electron populations 1.21922 0.93522 1.03103 1.02266 1.22799 0.95497 0.95691 0.84997 0.91274 1.23028 1.00320 0.97411 0.98063 1.23108 1.01265 0.99708 0.94155 1.22996 0.90161 0.93669 0.93325 0.88793 1.20057 0.81347 0.82890 0.85588 1.90723 1.47970 1.70229 1.30731 1.45973 1.26481 1.32337 1.31708 1.22158 0.95978 0.85102 0.93525 0.89047 1.23394 0.99167 0.96075 1.00604 1.21948 0.81322 0.95928 0.98010 1.44484 1.03713 0.98265 1.85565 1.18974 0.85338 0.88019 1.42660 0.90508 1.24788 0.97059 0.96461 1.02224 1.69785 1.21592 1.08925 1.56604 0.86159 0.82063 0.79434 0.77852 1.21230 1.21587 1.21189 1.20978 0.91090 0.86988 0.96150 0.94645 1.22248 1.01216 0.98047 1.00011 1.89056 1.38080 1.66933 1.32210 0.91694 0.91818 0.91293 0.90331 0.89944 0.89709 0.89240 0.76872 0.91962 0.92018 0.96763 0.87336 0.93623 0.92888 0.92698 0.94314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.37 37.15 0.35 -0.92 16 2 C 0.07 0.64 4.05 -26.16 -0.11 0.53 16 3 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.15 -1.13 6.64 -25.20 -0.17 -1.29 16 5 C -0.14 -1.31 6.56 -24.72 -0.16 -1.48 16 6 C 0.06 0.70 3.77 -26.83 -0.10 0.60 16 7 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 8 C 0.52 8.07 7.20 -10.98 -0.08 7.99 16 9 O -0.52 -10.62 16.29 -13.47 -0.22 -10.84 16 10 N -0.71 -10.39 5.19 -52.04 -0.27 -10.66 16 11 C 0.14 2.50 2.76 -66.10 -0.18 2.32 16 12 H 0.09 1.82 7.41 -51.93 -0.38 1.44 16 13 C -0.15 -3.06 6.76 -24.59 -0.17 -3.22 16 14 C 0.15 3.73 5.89 -2.53 -0.01 3.72 16 15 N -0.60 -14.73 3.13 -162.58 -0.51 -15.24 16 16 C -0.22 -5.98 9.89 -15.06 -0.15 -6.13 16 17 H 0.08 1.99 7.83 -52.48 -0.41 1.58 16 18 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 19 N -0.92 -26.56 10.09 55.49 0.56 -26.00 16 20 Si 0.91 21.75 29.55 -169.99 -5.02 16.72 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 24 C 0.16 3.10 3.48 -66.96 -0.23 2.86 16 25 H 0.04 0.68 7.69 -51.93 -0.40 0.28 16 26 C -0.16 -2.87 9.14 37.16 0.34 -2.54 16 27 O -0.34 -4.74 10.48 -54.26 -0.57 -5.30 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.56 7.70 -51.93 -0.40 0.16 16 33 H 0.08 0.90 8.05 -51.93 -0.42 0.48 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.40 4.61 8.31 -40.82 -0.34 4.27 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.11 2.96 5.88 -51.93 -0.31 2.65 16 40 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.05 1.04 8.04 -51.93 -0.42 0.62 16 43 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 343.96 15.07 5.18 5.18 Total: -1.00 -32.64 343.96 -8.90 -41.54 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -7.28 Total: 2.51 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: -0.77 Total: 2.08 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: -0.22 Total: -51.90 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.79 Total: -16.14 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.64 -8.90 -41.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088869814.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.460 kcal (2) G-P(sol) polarization free energy of solvation -32.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds