Wall clock time and date at job start Tue Mar 31 2020 06:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.86852 * 2 1 4 4 C 1.54100 * 109.87950 * 238.99594 * 2 1 3 5 5 C 1.54817 * 104.18606 * 238.39547 * 4 2 1 6 6 C 1.54998 * 102.12466 * 339.09929 * 5 4 2 7 7 H 1.08997 * 110.62197 * 278.54323 * 6 5 4 8 8 C 1.50696 * 110.61941 * 155.53916 * 6 5 4 9 9 O 1.21276 * 120.00527 * 245.00081 * 8 6 5 10 10 N 1.34784 * 119.99721 * 65.00300 * 8 6 5 11 11 C 1.46498 * 119.99937 * 180.02562 * 10 8 6 12 12 H 1.09004 * 110.64156 * 323.31047 * 11 10 8 13 13 C 1.55149 * 110.72367 * 86.45549 * 11 10 8 14 14 C 1.54902 * 101.58815 * 153.86562 * 13 11 10 15 15 N 1.47430 * 104.82839 * 322.98942 * 14 13 11 16 16 C 1.36936 * 125.64789 * 204.08810 * 15 14 13 17 17 H 1.08004 * 119.99643 * 180.02562 * 16 15 14 18 18 C 1.38809 * 120.00031 * 0.03180 * 16 15 14 19 19 N 1.31619 * 120.00411 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99889 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47104 * 59.99888 * 20 18 16 22 22 H 1.48500 * 109.47162 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47408 * 299.99740 * 20 18 16 24 24 C 1.47020 * 108.70081 * 24.12870 * 15 14 13 25 25 H 1.09003 * 109.87875 * 239.52027 * 24 15 14 26 26 C 1.52999 * 109.88397 * 118.36003 * 24 15 14 27 27 O 1.43746 * 110.00491 * 121.08478 * 2 1 3 28 28 H 1.08999 * 109.47436 * 181.00407 * 1 2 3 29 29 H 1.09005 * 109.47578 * 301.00283 * 1 2 3 30 30 H 1.09000 * 109.47518 * 61.00584 * 1 2 3 31 31 H 1.08991 * 110.48958 * 119.72262 * 4 2 1 32 32 H 1.08998 * 110.49031 * 357.06904 * 4 2 1 33 33 H 1.09002 * 110.90844 * 97.31763 * 5 4 2 34 34 H 1.08997 * 110.90682 * 220.88854 * 5 4 2 35 35 H 0.96994 * 120.00052 * 359.97438 * 10 8 6 36 36 H 1.09003 * 111.00423 * 271.94173 * 13 11 10 37 37 H 1.08998 * 111.00452 * 35.78639 * 13 11 10 38 38 H 1.09004 * 110.37194 * 81.82438 * 14 13 11 39 39 H 1.08995 * 110.37460 * 204.04677 * 14 13 11 40 40 H 0.96997 * 120.00308 * 180.02562 * 19 18 16 41 41 H 1.09007 * 109.46927 * 302.18988 * 26 24 15 42 42 H 1.09004 * 109.47626 * 62.18787 * 26 24 15 43 43 H 1.09001 * 109.47746 * 182.18832 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 6 2.0539 -0.7465 -1.2421 5 6 2.9227 -1.8882 -0.6602 6 6 3.2426 -1.3614 0.7619 7 1 4.0716 -0.6543 0.7319 8 6 3.5515 -2.5043 1.6942 9 8 2.8180 -2.7379 2.6313 10 7 4.6433 -3.2670 1.4866 11 6 4.9433 -4.3785 2.3926 12 1 4.6823 -4.1191 3.4186 13 6 4.2018 -5.6661 1.9462 14 6 5.1206 -6.7708 2.5251 15 7 6.4893 -6.2491 2.3580 16 6 7.6280 -7.0058 2.2810 17 1 8.5879 -6.5261 2.1583 18 6 7.5486 -8.3894 2.3607 19 7 6.3789 -8.9739 2.5106 20 14 9.1018 -9.4217 2.2550 21 1 10.0190 -9.0506 3.3624 22 1 8.7489 -10.8598 2.3661 23 1 9.7725 -9.1752 0.9532 24 6 6.4293 -4.7817 2.2885 25 1 6.8410 -4.4384 1.3395 26 6 7.2163 -4.1732 3.4510 27 8 2.0217 -0.6974 1.1568 28 1 -0.3634 -1.0275 0.0180 29 1 -0.3634 0.5293 0.8809 30 1 -0.3634 0.4981 -0.8988 31 1 2.6597 -0.0826 -1.8588 32 1 1.2248 -1.1546 -1.8200 33 1 2.3591 -2.8200 -0.6122 34 1 3.8355 -2.0173 -1.2416 35 1 5.2298 -3.0805 0.7370 36 1 3.2059 -5.7160 2.3864 37 1 4.1505 -5.7305 0.8593 38 1 4.9021 -6.9313 3.5809 39 1 4.9960 -7.6989 1.9673 40 1 6.3234 -9.9407 2.5666 41 1 6.8101 -4.5372 4.3947 42 1 8.2643 -4.4620 3.3710 43 1 7.1352 -3.0868 3.4154 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088869814.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:39 Heat of formation + Delta-G solvation = -81.582510 kcal Electronic energy + Delta-G solvation = -22936.669712 eV Core-core repulsion = 19595.464819 eV Total energy + Delta-G solvation = -3341.204893 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.44348 -40.10150 -38.87878 -35.64714 -33.99035 -33.29444 -32.54330 -32.04125 -30.45874 -27.91869 -26.16081 -25.72871 -23.74847 -22.24161 -21.91914 -21.54581 -21.15590 -18.71309 -18.33384 -17.77609 -17.36787 -16.78080 -16.39822 -15.88337 -15.81902 -15.57722 -15.18700 -14.49772 -14.37140 -14.32473 -14.00127 -13.74155 -13.56198 -13.24699 -13.19590 -12.94385 -12.86081 -12.71282 -12.59997 -12.53457 -12.24328 -12.09305 -12.00779 -11.82052 -11.58555 -11.56897 -11.46664 -10.95402 -10.72019 -10.57911 -10.06047 -8.89882 -7.73866 -5.19261 1.49165 1.52178 1.54167 1.58286 1.83942 2.52268 2.99385 3.36538 3.44410 3.58677 3.71064 3.84307 3.93908 3.96091 3.99602 4.15716 4.19805 4.28106 4.47939 4.49310 4.61325 4.61967 4.66849 4.78154 4.80750 4.92107 4.93815 4.99263 5.04317 5.07756 5.12228 5.18287 5.30977 5.35452 5.50267 5.59196 5.60456 5.79978 5.91306 6.30558 6.55294 7.11443 7.22529 7.79434 8.43228 9.28056 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.037674 B = 0.003435 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.034234 B = 8149.742515 C = 8229.088686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 H 0.087 0.913 4 C -0.142 4.142 5 C -0.142 4.142 6 C 0.063 3.937 7 H 0.128 0.872 8 C 0.515 3.485 9 O -0.577 6.577 10 N -0.696 5.696 11 C 0.153 3.847 12 H 0.074 0.926 13 C -0.138 4.138 14 C 0.158 3.842 15 N -0.614 5.614 16 C -0.228 4.228 17 H 0.087 0.913 18 C -0.069 4.069 19 N -0.952 5.952 20 Si 0.979 3.021 21 H -0.280 1.280 22 H -0.298 1.298 23 H -0.273 1.273 24 C 0.153 3.847 25 H 0.059 0.941 26 C -0.148 4.148 27 O -0.386 6.386 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.063 0.937 34 H 0.119 0.881 35 H 0.417 0.583 36 H 0.059 0.941 37 H 0.073 0.927 38 H -0.018 1.018 39 H 0.078 0.922 40 H 0.246 0.754 41 H 0.032 0.968 42 H 0.049 0.951 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.702 19.477 -10.839 23.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.001 3.999 3 H 0.105 0.895 4 C -0.179 4.179 5 C -0.180 4.180 6 C 0.002 3.998 7 H 0.145 0.855 8 C 0.302 3.698 9 O -0.455 6.455 10 N -0.350 5.350 11 C 0.047 3.953 12 H 0.092 0.908 13 C -0.178 4.178 14 C 0.033 3.967 15 N -0.339 5.339 16 C -0.356 4.356 17 H 0.105 0.895 18 C -0.262 4.262 19 N -0.602 5.602 20 Si 0.808 3.192 21 H -0.207 1.207 22 H -0.225 1.225 23 H -0.199 1.199 24 C 0.046 3.954 25 H 0.076 0.924 26 C -0.207 4.207 27 O -0.305 6.305 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.115 0.885 31 H 0.125 0.875 32 H 0.107 0.893 33 H 0.082 0.918 34 H 0.138 0.862 35 H 0.254 0.746 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.000 1.000 39 H 0.096 0.904 40 H 0.055 0.945 41 H 0.051 0.949 42 H 0.068 0.932 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.260 19.116 -9.969 22.449 hybrid contribution 0.811 -1.078 0.197 1.363 sum -5.449 18.038 -9.772 21.226 Atomic orbital electron populations 1.21965 0.93429 1.02271 1.03198 1.23100 0.95763 0.96434 0.84637 0.89524 1.23039 1.00607 0.96949 0.97351 1.23155 1.02694 0.99297 0.92835 1.23130 0.90844 0.92657 0.93172 0.85469 1.20888 0.80310 0.83356 0.85285 1.90703 1.49721 1.71820 1.33263 1.45708 1.26779 1.30949 1.31523 1.21710 0.94683 0.85459 0.93463 0.90806 1.23184 0.98152 0.95556 1.00886 1.21651 0.82825 0.96430 0.95817 1.44721 1.03128 1.00541 1.85494 1.19376 0.86432 0.88516 1.41315 0.89484 1.25626 0.99838 0.97812 1.02881 1.70040 1.23536 1.08483 1.58152 0.85134 0.78702 0.77141 0.78236 1.20670 1.22485 1.19925 1.21185 0.92210 0.84369 0.97621 0.92377 1.22142 1.00287 1.00043 0.98236 1.89028 1.39049 1.67638 1.34794 0.93305 0.92799 0.88544 0.87458 0.89306 0.91797 0.86243 0.74561 0.92226 0.90862 1.00011 0.90388 0.94470 0.94864 0.93156 0.90913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.37 71.98 0.67 -1.64 16 2 C 0.06 0.94 4.05 30.96 0.13 1.06 16 3 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 4 C -0.14 -1.59 6.64 31.59 0.21 -1.38 16 5 C -0.14 -2.12 6.56 31.90 0.21 -1.91 16 6 C 0.06 1.31 3.77 30.53 0.12 1.42 16 7 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 8 C 0.51 15.38 7.20 87.65 0.63 16.01 16 9 O -0.58 -23.69 16.29 15.18 0.25 -23.45 16 10 N -0.70 -18.78 5.19 -436.93 -2.27 -21.05 16 11 C 0.15 5.47 2.76 46.18 0.13 5.60 16 12 H 0.07 2.96 7.41 -2.38 -0.02 2.95 16 13 C -0.14 -5.58 6.76 31.98 0.22 -5.36 16 14 C 0.16 8.02 5.89 86.85 0.51 8.53 16 15 N -0.61 -30.49 3.13 -668.27 -2.09 -32.58 16 16 C -0.23 -12.25 9.89 84.03 0.83 -11.42 16 17 H 0.09 4.40 7.83 -2.91 -0.02 4.38 16 18 C -0.07 -3.87 5.49 84.86 0.47 -3.40 16 19 N -0.95 -56.73 10.09 21.65 0.22 -56.51 16 20 Si 0.98 44.95 29.55 68.60 2.03 46.98 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 22 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 23 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 24 C 0.15 5.84 3.48 45.34 0.16 6.00 16 25 H 0.06 2.01 7.69 -2.39 -0.02 1.99 16 26 C -0.15 -5.22 9.14 71.98 0.66 -4.56 16 27 O -0.39 -10.09 10.48 -130.78 -1.37 -11.46 16 28 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.05 0.90 8.14 -2.38 -0.02 0.89 16 30 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.09 0.90 7.70 -2.39 -0.02 0.89 16 33 H 0.06 1.23 8.05 -2.39 -0.02 1.21 16 34 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.42 8.11 8.31 -92.71 -0.77 7.34 16 36 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 38 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 39 H 0.08 4.45 5.88 -2.39 -0.01 4.44 16 40 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 41 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 42 H 0.05 1.81 8.04 -2.38 -0.02 1.79 16 43 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -74.17 343.96 1.91 -72.25 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 0.22 Total: 16.88 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: 4.93 Total: 8.94 kcal Atomic # 7 Polarization: -106.00 SS G_CDS: -4.14 Total: -110.14 kcal Atomic # 8 Polarization: -33.79 SS G_CDS: -1.12 Total: -34.91 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -74.17 1.91 -72.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088869814.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.328 kcal (2) G-P(sol) polarization free energy of solvation -74.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds