Wall clock time and date at job start Tue Mar 31 2020 07:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 110.43629 * 2 1 4 4 C 1.54810 * 110.48823 * 237.45578 * 2 1 3 5 5 C 1.54997 * 102.09169 * 220.44341 * 4 2 1 6 6 O 1.44380 * 103.49159 * 37.02078 * 5 4 2 7 7 C 1.43738 * 106.97470 * 319.93926 * 6 5 4 8 8 H 1.08999 * 109.88197 * 267.08846 * 7 6 5 9 9 C 1.50704 * 110.00365 * 146.00511 * 7 6 5 10 10 O 1.21287 * 119.99444 * 357.09510 * 9 7 6 11 11 N 1.34772 * 120.00559 * 177.09193 * 9 7 6 12 12 C 1.46498 * 120.00390 * 180.02562 * 11 9 7 13 13 C 1.53004 * 109.47055 * 180.02562 * 12 11 9 14 14 C 1.53774 * 113.61516 * 274.13755 * 13 12 11 15 15 C 1.53956 * 87.02150 * 220.04991 * 14 13 12 16 16 N 1.46497 * 113.53475 * 270.81339 * 15 14 13 17 17 C 1.36938 * 119.99864 * 252.48744 * 16 15 14 18 18 H 1.08007 * 119.99845 * 0.02562 * 17 16 15 19 19 C 1.38813 * 120.00218 * 179.97438 * 17 16 15 20 20 N 1.31615 * 120.00261 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 119.99864 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47312 * 89.99690 * 21 19 17 23 23 H 1.48500 * 109.47280 * 210.00014 * 21 19 17 24 24 H 1.48504 * 109.46802 * 329.99407 * 21 19 17 25 25 C 1.53783 * 113.61101 * 176.52833 * 13 12 11 26 26 H 1.09004 * 109.47311 * 181.08951 * 1 2 3 27 27 H 1.09004 * 109.47299 * 301.08897 * 1 2 3 28 28 H 1.09002 * 109.47713 * 61.09339 * 1 2 3 29 29 H 1.09001 * 110.90550 * 102.24617 * 4 2 1 30 30 H 1.08997 * 110.93991 * 338.65460 * 4 2 1 31 31 H 1.08995 * 110.62086 * 155.52609 * 5 4 2 32 32 H 1.09010 * 110.61810 * 278.52333 * 5 4 2 33 33 H 0.97006 * 119.99697 * 0.02562 * 11 9 7 34 34 H 1.09006 * 109.47128 * 300.00094 * 12 11 9 35 35 H 1.08997 * 109.46748 * 59.99993 * 12 11 9 36 36 H 1.09003 * 112.84941 * 45.33852 * 13 12 11 37 37 H 1.09007 * 113.61583 * 334.56672 * 14 13 12 38 38 H 1.08998 * 113.61798 * 105.46961 * 14 13 12 39 39 H 1.08996 * 113.74628 * 139.93894 * 15 14 13 40 40 H 0.97003 * 120.00269 * 72.49434 * 16 15 14 41 41 H 0.96997 * 120.00170 * 179.97438 * 20 19 17 42 42 H 1.08997 * 113.61143 * 254.52794 * 25 13 12 43 43 H 1.08994 * 113.61416 * 25.34715 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0718 -0.7801 -1.2225 5 6 3.2659 -1.5553 -0.6096 6 8 2.7955 -1.9118 0.7080 7 6 2.0694 -0.7796 1.2149 8 1 2.7350 -0.1431 1.7979 9 6 0.9229 -1.2454 2.0749 10 8 0.7033 -2.4314 2.2024 11 7 0.1415 -0.3442 2.7024 12 6 -0.9727 -0.7971 3.5389 13 6 -1.6931 0.4166 4.1295 14 6 -1.0652 0.9302 5.4359 15 6 -2.5012 1.1484 5.9462 16 7 -3.0407 2.4724 5.6268 17 6 -3.1909 3.4074 6.6160 18 1 -2.9113 3.1688 7.6316 19 6 -3.7016 4.6622 6.3133 20 7 -3.8455 5.5610 7.2639 21 14 -4.1846 5.0751 4.5567 22 1 -5.6087 4.7163 4.3375 23 1 -3.9985 6.5294 4.3210 24 1 -3.3302 4.3078 3.6151 25 6 -2.9354 0.0518 4.9594 26 1 -0.3634 -1.0275 0.0195 27 1 -0.3634 0.5307 0.8801 28 1 -0.3634 0.4967 -0.8996 29 1 2.4102 -0.0966 -2.0012 30 1 1.3200 -1.4673 -1.6105 31 1 3.4839 -2.4491 -1.1942 32 1 4.1456 -0.9150 -0.5429 33 1 0.3169 0.6043 2.6002 34 1 -1.6710 -1.3742 2.9326 35 1 -0.5903 -1.4216 4.3463 36 1 -1.8741 1.2006 3.3942 37 1 -0.5173 0.1658 5.9871 38 1 -0.4988 1.8536 5.3146 39 1 -2.6416 0.8751 6.9920 40 1 -3.2916 2.6868 4.7147 41 1 -4.2020 6.4379 7.0524 42 1 -3.8767 0.2672 4.4539 43 1 -2.9005 -0.9537 5.3787 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091237216.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:40 Heat of formation + Delta-G solvation = -45.862051 kcal Electronic energy + Delta-G solvation = -22545.986505 eV Core-core repulsion = 19206.330567 eV Total energy + Delta-G solvation = -3339.655937 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.86805 -39.13163 -38.19266 -35.03361 -33.88704 -33.11274 -30.92072 -30.32849 -27.87345 -26.78088 -25.21343 -23.76654 -22.99497 -21.89409 -21.57493 -20.18374 -18.60710 -17.72695 -17.42014 -17.08437 -16.42459 -15.47774 -15.45210 -14.99006 -14.74853 -14.40020 -14.30192 -13.79609 -13.62753 -13.50713 -13.03128 -12.78473 -12.72980 -12.49397 -12.08582 -11.86315 -11.59523 -11.53930 -11.42958 -11.36495 -11.19652 -10.94960 -10.54479 -10.38637 -10.26424 -10.11160 -9.74375 -9.64807 -9.48747 -9.02824 -8.94285 -7.34755 -5.83828 -3.20191 2.50287 2.80735 3.29769 3.33363 3.39293 3.70347 4.01553 4.29064 4.39114 4.51636 4.62327 4.78254 4.86052 4.91102 4.94183 5.00553 5.06572 5.21552 5.24125 5.34519 5.35598 5.39939 5.46979 5.50706 5.55687 5.67292 5.72199 5.81659 5.88827 5.90673 6.09753 6.19826 6.29097 6.42006 6.46926 6.58350 6.70570 6.85527 7.40097 7.94149 8.13234 8.35871 9.13542 9.85667 10.04863 11.34329 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024980 B = 0.003485 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.636036 B = 8032.991668 C = 8671.289855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.117 4.117 3 H 0.094 0.906 4 C -0.150 4.150 5 C 0.043 3.957 6 O -0.347 6.347 7 C 0.060 3.940 8 H 0.094 0.906 9 C 0.518 3.482 10 O -0.526 6.526 11 N -0.724 5.724 12 C 0.132 3.868 13 C -0.123 4.123 14 C -0.167 4.167 15 C 0.172 3.828 16 N -0.730 5.730 17 C -0.247 4.247 18 H 0.092 0.908 19 C 0.006 3.994 20 N -0.932 5.932 21 Si 0.885 3.115 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.278 1.278 25 C -0.148 4.148 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.064 0.936 33 H 0.402 0.598 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.362 0.638 41 H 0.260 0.740 42 H 0.067 0.933 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.010 -11.724 -17.000 23.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.136 4.136 3 H 0.113 0.887 4 C -0.188 4.188 5 C -0.033 4.033 6 O -0.265 6.265 7 C -0.001 4.001 8 H 0.112 0.888 9 C 0.303 3.697 10 O -0.401 6.401 11 N -0.378 5.378 12 C 0.009 3.991 13 C -0.142 4.142 14 C -0.208 4.208 15 C 0.061 3.939 16 N -0.370 5.370 17 C -0.377 4.377 18 H 0.110 0.890 19 C -0.190 4.190 20 N -0.579 5.579 21 Si 0.715 3.285 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.204 1.204 25 C -0.188 4.188 26 H 0.080 0.920 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.115 0.885 32 H 0.082 0.918 33 H 0.237 0.763 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.195 0.805 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 11.853 -12.645 -16.545 23.961 hybrid contribution -0.214 1.168 -1.471 1.890 sum 11.639 -11.477 -18.016 24.326 Atomic orbital electron populations 1.22201 0.93333 1.02944 1.03279 1.22512 0.97736 1.00006 0.93347 0.88737 1.23246 0.98479 0.99492 0.97587 1.23636 0.96069 1.00046 0.83564 1.89009 1.70679 1.35691 1.31139 1.22760 0.93022 0.88729 0.95626 0.88838 1.20251 0.83040 0.86515 0.79920 1.90717 1.70829 1.16515 1.62061 1.46179 1.32020 1.09781 1.49836 1.21466 0.87214 0.96814 0.93628 1.22751 0.97815 0.96569 0.97042 1.23886 1.00412 1.00631 0.95846 1.21040 0.91074 0.85051 0.96752 1.42517 1.76204 1.10519 1.07766 1.19119 1.35983 0.91883 0.90695 0.89015 1.24685 1.01134 0.96260 0.96966 1.69694 1.51223 1.05774 1.31218 0.86557 0.78622 0.77490 0.85851 1.21000 1.21671 1.20438 1.23457 0.96664 1.00097 0.98591 0.91987 0.90819 0.91795 0.89750 0.90061 0.88539 0.91794 0.76264 0.91759 0.91366 0.89261 0.90907 0.91332 0.91033 0.80542 0.92957 0.91426 0.89954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 7.87 37.15 0.29 -1.07 16 2 C -0.12 -0.90 3.64 -89.09 -0.32 -1.22 16 3 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 4 C -0.15 -1.03 6.71 -24.72 -0.17 -1.19 16 5 C 0.04 0.34 7.72 38.21 0.29 0.63 16 6 O -0.35 -4.24 10.75 -54.74 -0.59 -4.83 16 7 C 0.06 0.62 3.84 -27.31 -0.10 0.51 16 8 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 9 C 0.52 6.72 5.47 -10.99 -0.06 6.66 16 10 O -0.53 -9.17 16.53 -13.95 -0.23 -9.40 16 11 N -0.72 -8.03 3.90 -60.29 -0.24 -8.26 16 12 C 0.13 1.61 5.50 -4.04 -0.02 1.59 16 13 C -0.12 -1.63 3.62 -89.81 -0.33 -1.96 16 14 C -0.17 -2.54 7.44 -25.83 -0.19 -2.74 16 15 C 0.17 3.12 4.57 -67.02 -0.31 2.82 16 16 N -0.73 -16.48 5.11 -52.55 -0.27 -16.74 16 17 C -0.25 -6.77 10.45 -15.06 -0.16 -6.93 16 18 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 19 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 20 N -0.93 -28.72 13.97 55.49 0.78 -27.94 16 21 Si 0.88 21.39 27.74 -169.99 -4.71 16.67 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.28 -6.23 6.52 56.52 0.37 -5.86 16 25 C -0.15 -2.14 7.39 -25.91 -0.19 -2.33 16 26 H 0.06 0.66 7.42 -51.93 -0.39 0.27 16 27 H 0.07 0.63 5.44 -51.93 -0.28 0.35 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.61 7.87 -51.93 -0.41 0.20 16 31 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.39 8.14 -51.92 -0.42 -0.04 16 33 H 0.40 3.67 7.47 -40.82 -0.30 3.37 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.89 7.88 -51.93 -0.41 0.48 16 36 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.07 1.01 7.92 -51.92 -0.41 0.60 16 38 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.07 1.34 8.10 -51.93 -0.42 0.92 16 40 H 0.36 7.97 5.76 -40.82 -0.24 7.73 16 41 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 42 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 LS Contribution 342.20 15.07 5.16 5.16 Total: -1.00 -33.70 342.20 -8.56 -42.26 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -7.10 Total: 8.26 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: -1.36 Total: -5.16 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: 0.27 Total: -52.95 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: -0.82 Total: -14.23 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.71 Total: 16.67 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.70 -8.56 -42.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091237216.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.605 kcal (2) G-P(sol) polarization free energy of solvation -33.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds