Wall clock time and date at job start Tue Mar 31 2020 07:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 110.43629 * 2 1 4 4 C 1.54810 * 110.48823 * 237.45578 * 2 1 3 5 5 C 1.54997 * 102.09169 * 220.44341 * 4 2 1 6 6 O 1.44380 * 103.49159 * 37.02078 * 5 4 2 7 7 C 1.43738 * 106.97470 * 319.93926 * 6 5 4 8 8 H 1.08999 * 109.88197 * 267.08846 * 7 6 5 9 9 C 1.50704 * 110.00365 * 146.00511 * 7 6 5 10 10 O 1.21287 * 119.99444 * 357.09510 * 9 7 6 11 11 N 1.34772 * 120.00559 * 177.09193 * 9 7 6 12 12 C 1.46498 * 120.00390 * 180.02562 * 11 9 7 13 13 C 1.53004 * 109.47055 * 180.02562 * 12 11 9 14 14 C 1.53774 * 113.61516 * 274.13755 * 13 12 11 15 15 C 1.53956 * 87.02150 * 220.04991 * 14 13 12 16 16 N 1.46497 * 113.53475 * 270.81339 * 15 14 13 17 17 C 1.36938 * 119.99864 * 252.48744 * 16 15 14 18 18 H 1.08007 * 119.99845 * 0.02562 * 17 16 15 19 19 C 1.38813 * 120.00218 * 179.97438 * 17 16 15 20 20 N 1.31615 * 120.00261 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 119.99864 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47312 * 89.99690 * 21 19 17 23 23 H 1.48500 * 109.47280 * 210.00014 * 21 19 17 24 24 H 1.48504 * 109.46802 * 329.99407 * 21 19 17 25 25 C 1.53783 * 113.61101 * 176.52833 * 13 12 11 26 26 H 1.09004 * 109.47311 * 181.08951 * 1 2 3 27 27 H 1.09004 * 109.47299 * 301.08897 * 1 2 3 28 28 H 1.09002 * 109.47713 * 61.09339 * 1 2 3 29 29 H 1.09001 * 110.90550 * 102.24617 * 4 2 1 30 30 H 1.08997 * 110.93991 * 338.65460 * 4 2 1 31 31 H 1.08995 * 110.62086 * 155.52609 * 5 4 2 32 32 H 1.09010 * 110.61810 * 278.52333 * 5 4 2 33 33 H 0.97006 * 119.99697 * 0.02562 * 11 9 7 34 34 H 1.09006 * 109.47128 * 300.00094 * 12 11 9 35 35 H 1.08997 * 109.46748 * 59.99993 * 12 11 9 36 36 H 1.09003 * 112.84941 * 45.33852 * 13 12 11 37 37 H 1.09007 * 113.61583 * 334.56672 * 14 13 12 38 38 H 1.08998 * 113.61798 * 105.46961 * 14 13 12 39 39 H 1.08996 * 113.74628 * 139.93894 * 15 14 13 40 40 H 0.97003 * 120.00269 * 72.49434 * 16 15 14 41 41 H 0.96997 * 120.00170 * 179.97438 * 20 19 17 42 42 H 1.08997 * 113.61143 * 254.52794 * 25 13 12 43 43 H 1.08994 * 113.61416 * 25.34715 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0718 -0.7801 -1.2225 5 6 3.2659 -1.5553 -0.6096 6 8 2.7955 -1.9118 0.7080 7 6 2.0694 -0.7796 1.2149 8 1 2.7350 -0.1431 1.7979 9 6 0.9229 -1.2454 2.0749 10 8 0.7033 -2.4314 2.2024 11 7 0.1415 -0.3442 2.7024 12 6 -0.9727 -0.7971 3.5389 13 6 -1.6931 0.4166 4.1295 14 6 -1.0652 0.9302 5.4359 15 6 -2.5012 1.1484 5.9462 16 7 -3.0407 2.4724 5.6268 17 6 -3.1909 3.4074 6.6160 18 1 -2.9113 3.1688 7.6316 19 6 -3.7016 4.6622 6.3133 20 7 -3.8455 5.5610 7.2639 21 14 -4.1846 5.0751 4.5567 22 1 -5.6087 4.7163 4.3375 23 1 -3.9985 6.5294 4.3210 24 1 -3.3302 4.3078 3.6151 25 6 -2.9354 0.0518 4.9594 26 1 -0.3634 -1.0275 0.0195 27 1 -0.3634 0.5307 0.8801 28 1 -0.3634 0.4967 -0.8996 29 1 2.4102 -0.0966 -2.0012 30 1 1.3200 -1.4673 -1.6105 31 1 3.4839 -2.4491 -1.1942 32 1 4.1456 -0.9150 -0.5429 33 1 0.3169 0.6043 2.6002 34 1 -1.6710 -1.3742 2.9326 35 1 -0.5903 -1.4216 4.3463 36 1 -1.8741 1.2006 3.3942 37 1 -0.5173 0.1658 5.9871 38 1 -0.4988 1.8536 5.3146 39 1 -2.6416 0.8751 6.9920 40 1 -3.2916 2.6868 4.7147 41 1 -4.2020 6.4379 7.0524 42 1 -3.8767 0.2672 4.4539 43 1 -2.9005 -0.9537 5.3787 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091237216.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:39 Heat of formation + Delta-G solvation = -68.946969 kcal Electronic energy + Delta-G solvation = -22546.987542 eV Core-core repulsion = 19206.330567 eV Total energy + Delta-G solvation = -3340.656975 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.71431 -40.28900 -39.21803 -36.20722 -35.25632 -34.29268 -32.66731 -31.21426 -28.89543 -27.65750 -26.45752 -25.42590 -23.96200 -23.00478 -22.42939 -21.09812 -20.05230 -19.54926 -18.27741 -17.85644 -17.36579 -16.74603 -16.38583 -16.15694 -16.03488 -15.67687 -15.12374 -14.94177 -14.89941 -14.61253 -14.39468 -14.11643 -13.64805 -13.47972 -13.35692 -13.08796 -13.01733 -12.70218 -12.38265 -12.24531 -12.17354 -12.00183 -11.86727 -11.77027 -11.62738 -11.53304 -11.09346 -10.97720 -10.86899 -10.47408 -10.01246 -9.29033 -8.01856 -5.35816 1.37902 1.43132 1.50072 1.54598 1.94605 2.49277 3.01547 3.28426 3.39540 3.51880 3.58482 3.73408 3.75445 3.85302 4.00105 4.02712 4.24912 4.27576 4.29076 4.37772 4.45435 4.61475 4.69127 4.70851 4.76921 4.82581 4.91422 4.93707 4.97805 5.02073 5.08883 5.12556 5.24645 5.27157 5.32608 5.48105 5.54766 5.78443 5.81642 6.23386 6.51211 7.08735 7.19457 7.85206 8.04395 9.19763 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024980 B = 0.003485 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.636036 B = 8032.991668 C = 8671.289855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.112 4.112 3 H 0.124 0.876 4 C -0.147 4.147 5 C 0.036 3.964 6 O -0.387 6.387 7 C 0.057 3.943 8 H 0.115 0.885 9 C 0.515 3.485 10 O -0.578 6.578 11 N -0.712 5.712 12 C 0.139 3.861 13 C -0.102 4.102 14 C -0.155 4.155 15 C 0.145 3.855 16 N -0.733 5.733 17 C -0.233 4.233 18 H 0.055 0.945 19 C -0.066 4.066 20 N -0.986 5.986 21 Si 0.957 3.043 22 H -0.280 1.280 23 H -0.297 1.297 24 H -0.245 1.245 25 C -0.134 4.134 26 H 0.034 0.966 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.112 0.888 30 H 0.068 0.932 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.414 0.586 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.368 0.632 41 H 0.258 0.742 42 H 0.068 0.932 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.907 -11.822 -19.913 26.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.131 4.131 3 H 0.142 0.858 4 C -0.184 4.184 5 C -0.039 4.039 6 O -0.305 6.305 7 C -0.004 4.004 8 H 0.133 0.867 9 C 0.302 3.698 10 O -0.458 6.458 11 N -0.366 5.366 12 C 0.016 3.984 13 C -0.121 4.121 14 C -0.196 4.196 15 C 0.036 3.964 16 N -0.375 5.375 17 C -0.364 4.364 18 H 0.073 0.927 19 C -0.257 4.257 20 N -0.636 5.636 21 Si 0.784 3.216 22 H -0.207 1.207 23 H -0.224 1.224 24 H -0.169 1.169 25 C -0.174 4.174 26 H 0.053 0.947 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.130 0.870 30 H 0.087 0.913 31 H 0.119 0.881 32 H 0.103 0.897 33 H 0.252 0.748 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.201 0.799 41 H 0.067 0.933 42 H 0.087 0.913 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 12.779 -12.777 -19.484 26.574 hybrid contribution -0.455 1.105 -0.449 1.277 sum 12.324 -11.671 -19.933 26.181 Atomic orbital electron populations 1.22173 0.94123 1.01293 1.03976 1.22586 0.96977 1.01177 0.92322 0.85769 1.23253 0.97720 0.99558 0.97869 1.23888 0.97083 1.00964 0.81995 1.88970 1.71150 1.37201 1.33222 1.22940 0.92286 0.88683 0.96483 0.86710 1.20846 0.83450 0.85861 0.79600 1.90688 1.72358 1.18721 1.63984 1.46070 1.31263 1.10303 1.48955 1.21294 0.87466 0.96088 0.93578 1.22567 0.96639 0.96757 0.96127 1.23734 0.98268 1.00649 0.96902 1.21369 0.93542 0.84322 0.97175 1.42417 1.76902 1.11267 1.06881 1.19062 1.34155 0.92829 0.90350 0.92716 1.25546 1.02105 0.96206 1.01878 1.69890 1.53384 1.06316 1.34010 0.85383 0.78666 0.76977 0.80579 1.20664 1.22385 1.16934 1.23360 0.97216 0.99563 0.97217 0.94707 0.90855 0.90364 0.87003 0.91338 0.88081 0.89705 0.74788 0.91767 0.91954 0.88786 0.89346 0.92592 0.92616 0.79871 0.93337 0.91287 0.87796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 7.87 71.98 0.57 -1.74 16 2 C -0.11 -1.36 3.64 -9.81 -0.04 -1.40 16 3 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 4 C -0.15 -1.60 6.71 31.90 0.21 -1.38 16 5 C 0.04 0.49 7.72 72.67 0.56 1.05 16 6 O -0.39 -9.02 10.75 -130.33 -1.40 -10.42 16 7 C 0.06 1.06 3.84 30.22 0.12 1.17 16 8 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 9 C 0.52 12.74 5.47 87.66 0.48 13.22 16 10 O -0.58 -20.15 16.53 15.60 0.26 -19.89 16 11 N -0.71 -14.21 3.90 -463.05 -1.81 -16.02 16 12 C 0.14 3.09 5.50 86.38 0.47 3.57 16 13 C -0.10 -2.42 3.62 -10.27 -0.04 -2.46 16 14 C -0.16 -4.42 7.44 31.18 0.23 -4.19 16 15 C 0.15 5.10 4.57 45.58 0.21 5.31 16 16 N -0.73 -32.33 5.11 -320.16 -1.64 -33.96 16 17 C -0.23 -12.96 10.45 84.03 0.88 -12.08 16 18 H 0.05 3.37 8.06 -2.91 -0.02 3.35 16 19 C -0.07 -3.81 5.50 84.86 0.47 -3.35 16 20 N -0.99 -62.45 13.97 21.65 0.30 -62.15 16 21 Si 0.96 43.69 27.74 68.60 1.90 45.59 16 22 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 23 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 24 H -0.25 -9.72 6.52 99.48 0.65 -9.07 16 25 C -0.13 -3.53 7.39 31.12 0.23 -3.30 16 26 H 0.03 0.70 7.42 -2.39 -0.02 0.68 16 27 H 0.07 1.04 5.44 -2.38 -0.01 1.03 16 28 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.07 0.92 7.87 -2.39 -0.02 0.90 16 31 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.41 6.28 7.47 -92.70 -0.69 5.59 16 34 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 35 H 0.06 1.50 7.88 -2.39 -0.02 1.49 16 36 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.09 2.27 7.92 -2.38 -0.02 2.25 16 38 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.06 2.11 8.10 -2.39 -0.02 2.09 16 40 H 0.37 15.26 5.76 -92.71 -0.53 14.73 16 41 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 42 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.10 2.32 8.10 -2.39 -0.02 2.30 16 Total: -1.00 -76.02 342.20 1.69 -74.32 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: -0.28 Total: 28.11 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: 4.35 Total: -5.58 kcal Atomic # 7 Polarization: -108.99 SS G_CDS: -3.14 Total: -112.13 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -1.14 Total: -30.31 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.90 Total: 45.59 kcal Total: -76.02 1.69 -74.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091237216.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.378 kcal (2) G-P(sol) polarization free energy of solvation -76.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds