Wall clock time and date at job start Tue Mar 31 2020 06:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 110.43506 * 2 1 4 4 C 1.54892 * 110.59943 * 237.38889 * 2 1 3 5 5 C 1.54890 * 102.75023 * 203.32520 * 4 2 1 6 6 C 1.54270 * 104.19586 * 37.93441 * 5 4 2 7 7 C 1.53871 * 106.60011 * 336.39508 * 6 5 4 8 8 H 1.09001 * 110.07348 * 240.69209 * 7 6 5 9 9 N 1.46506 * 110.03340 * 119.27858 * 7 6 5 10 10 C 1.34774 * 119.99539 * 87.83374 * 9 7 6 11 11 O 1.21349 * 120.00251 * 359.97438 * 10 9 7 12 12 C 1.49446 * 120.00198 * 180.02562 * 10 9 7 13 13 O 1.21354 * 119.99957 * 359.97438 * 12 10 9 14 14 N 1.34779 * 120.00569 * 180.02562 * 12 10 9 15 15 C 1.46496 * 120.00107 * 180.02562 * 14 12 10 16 16 C 1.52997 * 109.46953 * 180.02562 * 15 14 12 17 17 C 1.53006 * 109.47127 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.47184 * 180.02562 * 17 16 15 19 19 H 1.08005 * 119.99819 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00046 * 180.02562 * 18 17 16 21 21 N 1.31511 * 120.00192 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99979 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47309 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47510 * 119.99847 * 22 20 18 25 25 H 1.48506 * 109.47246 * 239.99882 * 22 20 18 26 26 H 1.09002 * 109.46642 * 297.45554 * 1 2 3 27 27 H 1.09002 * 109.46747 * 57.45521 * 1 2 3 28 28 H 1.08994 * 109.46785 * 177.45548 * 1 2 3 29 29 H 1.09003 * 110.75019 * 321.63532 * 4 2 1 30 30 H 1.08999 * 110.75774 * 84.81932 * 4 2 1 31 31 H 1.08988 * 110.49029 * 156.61890 * 5 4 2 32 32 H 1.09007 * 110.48269 * 279.12753 * 5 4 2 33 33 H 1.08999 * 110.03561 * 217.10707 * 6 5 4 34 34 H 1.09001 * 110.02806 * 95.68114 * 6 5 4 35 35 H 0.96989 * 120.00196 * 267.83504 * 9 7 6 36 36 H 0.96999 * 119.99538 * 359.97438 * 14 12 10 37 37 H 1.08996 * 109.47565 * 60.00082 * 15 14 12 38 38 H 1.09001 * 109.47062 * 299.99546 * 15 14 12 39 39 H 1.09001 * 109.47502 * 60.00124 * 16 15 14 40 40 H 1.09001 * 109.47289 * 299.99920 * 16 15 14 41 41 H 1.09001 * 109.47002 * 299.99574 * 17 16 15 42 42 H 1.08993 * 109.46955 * 60.00011 * 17 16 15 43 43 H 0.96996 * 120.00505 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0750 -0.7814 -1.2213 5 6 3.4938 -1.1947 -0.7574 6 6 3.3186 -1.5369 0.7367 7 6 2.0700 -0.7774 1.2181 8 1 2.3383 -0.0835 2.0148 9 7 1.0600 -1.7245 1.6969 10 6 1.0739 -2.1323 2.9814 11 8 1.9232 -1.7154 3.7412 12 6 0.0440 -3.0988 3.4697 13 8 -0.8052 -3.5161 2.7098 14 7 0.0575 -3.5063 4.7544 15 6 -0.9518 -4.4541 5.2329 16 6 -0.7130 -4.7483 6.7152 17 6 -1.7676 -5.7378 7.2151 18 6 -1.5328 -6.0270 8.6753 19 1 -0.7131 -5.5529 9.1947 20 6 -2.3636 -6.8978 9.3479 21 7 -3.3614 -7.4756 8.7153 22 14 -2.0721 -7.2568 11.1577 23 1 -0.8941 -6.4868 11.6317 24 1 -3.2704 -6.8608 11.9403 25 1 -1.8197 -8.7089 11.3400 26 1 -0.3633 0.4738 0.9120 27 1 -0.3633 0.5529 -0.8663 28 1 -0.3633 -1.0266 -0.0456 29 1 1.4628 -1.6607 -1.4217 30 1 2.1248 -0.1387 -2.1002 31 1 3.8369 -2.0684 -1.3112 32 1 4.1921 -0.3669 -0.8818 33 1 4.1936 -1.2117 1.2994 34 1 3.1731 -2.6102 0.8592 35 1 0.3814 -2.0580 1.0895 36 1 0.7360 -3.1724 5.3619 37 1 -0.8802 -5.3801 4.6622 38 1 -1.9448 -4.0236 5.1037 39 1 -0.7850 -3.8222 7.2856 40 1 0.2800 -5.1786 6.8449 41 1 -2.7604 -5.3070 7.0856 42 1 -1.6960 -6.6639 6.6448 43 1 -3.9457 -8.0884 9.1884 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117306103.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:18 Heat of formation + Delta-G solvation = -100.025339 kcal Electronic energy + Delta-G solvation = -21703.061442 eV Core-core repulsion = 18361.056808 eV Total energy + Delta-G solvation = -3342.004634 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.84914 -39.28734 -37.92974 -35.68433 -33.90032 -33.24127 -31.71538 -31.24235 -28.52316 -27.10628 -25.55010 -24.45726 -22.64551 -21.02729 -20.80441 -20.28749 -19.86971 -18.40656 -16.96955 -16.42042 -15.99286 -15.86178 -15.67652 -15.04569 -14.96101 -14.51825 -14.43407 -14.15763 -13.79803 -13.46894 -13.18685 -12.70091 -12.32280 -12.17735 -11.88715 -11.79500 -11.65345 -11.53958 -11.34244 -11.23836 -10.99416 -10.93567 -10.93259 -10.76267 -10.58202 -9.90804 -9.77201 -9.42968 -9.36505 -9.12024 -8.97464 -8.38686 -6.03174 -4.06088 1.44113 2.37774 3.24210 3.29935 3.37547 3.41470 3.68210 4.02578 4.18416 4.40229 4.43629 4.53195 4.84859 4.95312 5.03630 5.09731 5.12041 5.24750 5.32915 5.33046 5.46548 5.54843 5.59543 5.66155 5.69148 5.74704 5.79645 5.86256 5.95675 6.08020 6.16497 6.27693 6.54011 6.69940 6.94940 6.96348 7.42864 7.61606 7.73054 7.75764 7.95370 8.06536 8.36645 9.00689 9.58366 11.08177 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.045534 B = 0.002421 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.773179 B =11563.281262 C =11827.284093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.103 4.103 3 H 0.089 0.911 4 C -0.123 4.123 5 C -0.124 4.124 6 C -0.136 4.136 7 C 0.141 3.859 8 H 0.095 0.905 9 N -0.696 5.696 10 C 0.508 3.492 11 O -0.521 6.521 12 C 0.499 3.501 13 O -0.528 6.528 14 N -0.691 5.691 15 C 0.113 3.887 16 C -0.123 4.123 17 C 0.024 3.976 18 C -0.522 4.522 19 H 0.057 0.943 20 C 0.056 3.944 21 N -0.894 5.894 22 Si 0.893 3.107 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.412 0.588 36 H 0.411 0.589 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.549 15.330 -20.369 27.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.122 4.122 3 H 0.107 0.893 4 C -0.160 4.160 5 C -0.162 4.162 6 C -0.175 4.175 7 C 0.036 3.964 8 H 0.113 0.887 9 N -0.352 5.352 10 C 0.288 3.712 11 O -0.397 6.397 12 C 0.279 3.721 13 O -0.405 6.405 14 N -0.343 5.343 15 C -0.009 4.009 16 C -0.161 4.161 17 C -0.014 4.014 18 C -0.560 4.560 19 H 0.075 0.925 20 C -0.145 4.145 21 N -0.533 5.533 22 Si 0.721 3.279 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.210 1.210 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.251 0.749 36 H 0.247 0.753 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.391 15.192 -20.315 27.807 hybrid contribution 0.081 -0.325 1.050 1.102 sum 11.472 14.868 -19.265 26.903 Atomic orbital electron populations 1.21785 0.94304 1.02101 1.02376 1.22282 0.96350 0.99629 0.93966 0.89277 1.22629 0.96261 0.99943 0.97215 1.22349 0.97062 1.01344 0.95429 1.22615 0.97682 1.01077 0.96116 1.21740 0.87440 0.90479 0.96715 0.88737 1.46050 1.32977 1.45553 1.10617 1.20363 0.85410 0.82333 0.83050 1.90752 1.37723 1.55917 1.55271 1.20057 0.85530 0.82830 0.83705 1.90755 1.37860 1.56665 1.55183 1.46072 1.33097 1.45122 1.10006 1.21841 0.90524 0.91480 0.97005 1.21927 1.01915 1.01279 0.90938 1.19039 0.93049 0.93315 0.95969 1.21239 1.13519 1.26051 0.95178 0.92517 1.25030 0.95157 0.95947 0.98372 1.69970 1.17118 1.29893 1.36341 0.86518 0.78125 0.78057 0.85188 1.19724 1.20994 1.20999 0.92104 0.92021 0.92288 0.91156 0.91158 0.91409 0.91377 0.90821 0.91007 0.74878 0.75321 0.91110 0.91103 0.92430 0.92436 0.96192 0.96193 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 8.49 37.16 0.32 -0.64 16 2 C -0.10 -0.64 3.41 -88.96 -0.30 -0.94 16 3 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 4 C -0.12 -0.68 6.33 -24.74 -0.16 -0.84 16 5 C -0.12 -0.74 6.83 -25.07 -0.17 -0.91 16 6 C -0.14 -1.07 6.59 -25.61 -0.17 -1.24 16 7 C 0.14 1.18 3.12 -66.81 -0.21 0.97 16 8 H 0.09 0.90 7.57 -51.93 -0.39 0.50 16 9 N -0.70 -7.09 4.33 -53.15 -0.23 -7.32 16 10 C 0.51 6.69 7.89 -11.59 -0.09 6.60 16 11 O -0.52 -7.80 16.13 5.50 0.09 -7.71 16 12 C 0.50 7.50 7.89 -11.59 -0.09 7.41 16 13 O -0.53 -8.96 16.48 5.49 0.09 -8.87 16 14 N -0.69 -10.46 5.55 -60.73 -0.34 -10.79 16 15 C 0.11 1.96 5.67 -4.05 -0.02 1.94 16 16 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 17 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 18 C -0.52 -14.54 9.11 -34.44 -0.31 -14.85 16 19 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 20 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 21 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 22 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 23 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.40 6.22 -51.93 -0.32 0.07 16 29 H 0.07 0.41 8.05 -51.93 -0.42 0.00 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.39 8.14 -51.94 -0.42 -0.04 16 32 H 0.07 0.35 8.14 -51.92 -0.42 -0.07 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.65 7.92 -51.93 -0.41 0.24 16 35 H 0.41 3.91 5.92 -40.82 -0.24 3.67 16 36 H 0.41 5.70 7.94 -40.82 -0.32 5.37 16 37 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 353.18 15.07 5.32 5.32 Total: -1.00 -31.47 353.18 -8.09 -39.56 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -7.15 Total: 2.35 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -1.59 Total: -3.06 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: 0.17 Total: -44.10 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: 0.18 Total: -16.58 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.47 -8.09 -39.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117306103.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.464 kcal (2) G-P(sol) polarization free energy of solvation -31.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds