Wall clock time and date at job start Tue Mar 31 2020 06:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.46879 * 2 1 4 4 O 1.21286 * 120.00156 * 0.02562 * 3 2 1 5 5 N 1.34776 * 119.99787 * 179.97438 * 3 2 1 6 6 C 1.46498 * 119.99920 * 180.02562 * 5 3 2 7 7 C 1.53070 * 109.44278 * 84.79819 * 6 5 3 8 8 C 1.53195 * 109.29524 * 181.23594 * 7 6 5 9 9 N 1.46919 * 108.89273 * 305.57804 * 8 7 6 10 10 C 1.34783 * 120.63144 * 233.55709 * 9 8 7 11 11 O 1.21274 * 119.99655 * 0.02562 * 10 9 8 12 12 C 1.50698 * 119.99922 * 179.97438 * 10 9 8 13 13 C 1.52999 * 109.47009 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.47500 * 180.02562 * 13 12 10 15 15 H 1.08003 * 119.99447 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00503 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99596 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00214 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47346 * 89.99896 * 18 16 14 20 20 H 1.48502 * 109.46996 * 210.00216 * 18 16 14 21 21 H 1.48502 * 109.46958 * 329.99649 * 18 16 14 22 22 C 1.46928 * 118.73982 * 53.53793 * 9 8 7 23 23 C 1.53039 * 109.46033 * 205.00305 * 6 5 3 24 24 H 1.09005 * 109.47159 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47249 * 299.99882 * 1 2 3 26 26 H 1.08992 * 109.47506 * 59.99787 * 1 2 3 27 27 H 1.08998 * 109.46587 * 240.00122 * 2 1 3 28 28 H 1.09002 * 109.46993 * 120.00021 * 2 1 3 29 29 H 0.97004 * 120.00060 * 0.02562 * 5 3 2 30 30 H 1.09007 * 109.45852 * 324.97047 * 6 5 3 31 31 H 1.08997 * 109.38860 * 61.35781 * 7 6 5 32 32 H 1.09003 * 109.62046 * 301.25123 * 7 6 5 33 33 H 1.09002 * 109.58720 * 185.71834 * 8 7 6 34 34 H 1.08996 * 109.58651 * 65.43731 * 8 7 6 35 35 H 1.09001 * 109.47385 * 300.00399 * 12 10 9 36 36 H 1.08997 * 109.47457 * 60.00250 * 12 10 9 37 37 H 1.09001 * 109.46917 * 300.00128 * 13 12 10 38 38 H 1.08997 * 109.47262 * 59.99573 * 13 12 10 39 39 H 0.97003 * 119.99721 * 180.02562 * 17 16 14 40 40 H 1.08998 * 109.58787 * 66.18123 * 22 9 8 41 41 H 1.09007 * 109.58600 * 186.46436 * 22 9 8 42 42 H 1.09002 * 109.49876 * 58.67575 * 23 6 5 43 43 H 1.09005 * 109.52615 * 298.59825 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3574 1.6671 0.0005 6 6 3.8457 3.0483 0.0011 7 6 3.8916 3.5719 1.4387 8 6 4.3732 5.0262 1.4327 9 7 5.6556 5.0997 0.7195 10 6 6.7323 5.6664 1.2993 11 8 6.6481 6.1214 2.4204 12 6 8.0409 5.7337 0.5551 13 6 9.0913 6.4191 1.4313 14 6 10.3999 6.4870 0.6868 15 1 10.4749 6.0813 -0.3113 16 6 11.5012 7.0668 1.2799 17 7 11.4100 7.5602 2.4955 18 14 13.1229 7.1515 0.3568 19 1 13.1852 8.4159 -0.4196 20 1 14.2471 7.1100 1.3262 21 1 13.2258 5.9958 -0.5701 22 6 5.7422 4.5433 -0.6375 23 6 5.2488 3.0933 -0.6083 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.9877 0.9298 0.0005 30 1 3.1734 3.6714 -0.5889 31 1 4.5807 2.9629 2.0238 32 1 2.8958 3.5202 1.8791 33 1 4.5049 5.3718 2.4580 34 1 3.6378 5.6525 0.9277 35 1 8.3732 4.7243 0.3124 36 1 7.9070 6.3030 -0.3647 37 1 8.7592 7.4284 1.6743 38 1 9.2252 5.8495 2.3509 39 1 12.1847 7.9685 2.9127 40 1 5.1179 5.1282 -1.3129 41 1 6.7770 4.5725 -0.9791 42 1 5.2171 2.6993 -1.6241 43 1 5.9274 2.4901 -0.0052 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001124010410.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:53 Heat of formation + Delta-G solvation = -96.748738 kcal Electronic energy + Delta-G solvation = -22145.756834 eV Core-core repulsion = 18803.894284 eV Total energy + Delta-G solvation = -3341.862550 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.44141 -39.48689 -37.32773 -34.67336 -33.53477 -33.17697 -31.77537 -31.06610 -30.47196 -26.27860 -25.36283 -23.74146 -23.43187 -21.71983 -20.61674 -20.44153 -18.61182 -17.38251 -17.13780 -16.34374 -15.97279 -15.67936 -15.40968 -15.21058 -14.46496 -14.41098 -14.23324 -13.97818 -13.55525 -13.27622 -13.00429 -12.71875 -12.48738 -12.20788 -12.10946 -12.10184 -11.88804 -11.53968 -11.41258 -11.23996 -11.03252 -10.93940 -10.84631 -10.59084 -10.09274 -9.96894 -9.63129 -9.32260 -9.17569 -8.98717 -8.46751 -8.31935 -5.96589 -4.01157 2.37324 2.84957 3.21325 3.27513 3.32567 3.38847 3.41126 4.33307 4.45967 4.49223 4.60181 4.70029 4.72998 4.85248 4.97267 5.14468 5.14813 5.19895 5.38263 5.40099 5.42206 5.45405 5.56535 5.59980 5.62465 5.75951 5.83162 5.86684 5.99547 6.07776 6.18818 6.20733 6.23121 6.71851 6.89469 7.20741 7.73003 7.74215 7.85709 7.95791 8.06743 8.37659 8.73638 9.07341 9.62350 11.14351 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.040852 B = 0.002794 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.232758 B =10018.026055 C =10392.644820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.145 4.145 3 C 0.510 3.490 4 O -0.540 6.540 5 N -0.729 5.729 6 C 0.145 3.855 7 C -0.141 4.141 8 C 0.114 3.886 9 N -0.627 5.627 10 C 0.513 3.487 11 O -0.533 6.533 12 C -0.128 4.128 13 C 0.036 3.964 14 C -0.527 4.527 15 H 0.056 0.944 16 C 0.057 3.943 17 N -0.889 5.889 18 Si 0.893 3.107 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.113 3.887 23 C -0.142 4.142 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.400 0.600 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.023 0.977 38 H 0.023 0.977 39 H 0.261 0.739 40 H 0.068 0.932 41 H 0.098 0.902 42 H 0.080 0.920 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.430 -16.463 -8.271 26.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.185 4.185 3 C 0.297 3.703 4 O -0.417 6.417 5 N -0.380 5.380 6 C 0.041 3.959 7 C -0.181 4.181 8 C -0.010 4.010 9 N -0.363 5.363 10 C 0.303 3.697 11 O -0.408 6.408 12 C -0.168 4.168 13 C -0.001 4.001 14 C -0.565 4.565 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.528 5.528 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.011 4.011 23 C -0.181 4.181 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.110 0.890 28 H 0.111 0.889 29 H 0.234 0.766 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.112 0.888 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.042 0.958 38 H 0.041 0.959 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.116 0.884 42 H 0.099 0.901 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.930 -15.440 -7.506 25.555 hybrid contribution 1.246 -0.403 -0.502 1.402 sum -17.684 -15.842 -8.008 25.057 Atomic orbital electron populations 1.21527 0.93001 1.01564 1.03413 1.21647 0.98747 0.93829 1.04311 1.20824 0.82156 0.91885 0.75473 1.90714 1.55263 1.46573 1.49113 1.46179 1.07176 1.08881 1.75737 1.20985 0.95346 0.82701 0.96916 1.22297 1.02099 0.97022 0.96654 1.21424 0.84921 0.95205 0.99431 1.48337 1.10823 1.60796 1.16369 1.21594 0.85475 0.75846 0.86746 1.90659 1.84377 1.46187 1.19564 1.21881 0.91786 1.02631 1.00509 1.18910 0.90742 0.96151 0.94309 1.21211 0.95176 1.38791 1.01330 0.92626 1.25032 0.98992 0.95492 0.94919 1.70004 1.30291 1.38975 1.13519 0.86589 0.83439 0.78365 0.79532 1.20666 1.21232 1.19911 1.21616 1.03279 0.92232 0.83959 1.22220 0.95618 0.98415 1.01856 0.92112 0.91957 0.91984 0.88971 0.88935 0.76596 0.89287 0.91333 0.90561 0.88760 0.91843 0.90302 0.90249 0.95827 0.95856 0.92947 0.91390 0.88362 0.90110 0.90627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 9.20 37.16 0.34 -0.56 16 2 C -0.15 -0.83 6.42 -27.88 -0.18 -1.01 16 3 C 0.51 4.71 7.79 -10.99 -0.09 4.62 16 4 O -0.54 -7.27 15.65 5.55 0.09 -7.18 16 5 N -0.73 -5.60 5.08 -53.75 -0.27 -5.87 16 6 C 0.14 1.36 2.41 -67.88 -0.16 1.20 16 7 C -0.14 -1.57 5.66 -26.59 -0.15 -1.72 16 8 C 0.11 1.51 6.43 -3.71 -0.02 1.49 16 9 N -0.63 -9.13 2.97 -172.77 -0.51 -9.64 16 10 C 0.51 10.00 7.70 -10.98 -0.08 9.91 16 11 O -0.53 -12.72 15.39 5.56 0.09 -12.64 16 12 C -0.13 -2.58 3.98 -27.88 -0.11 -2.69 16 13 C 0.04 0.98 4.26 -27.88 -0.12 0.86 16 14 C -0.53 -14.84 9.11 -34.44 -0.31 -15.16 16 15 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -27.41 13.29 55.43 0.74 -26.68 16 18 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 22 C 0.11 1.20 6.34 -3.71 -0.02 1.18 16 23 C -0.14 -1.19 5.55 -26.61 -0.15 -1.33 16 24 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.06 0.49 8.10 -51.93 -0.42 0.06 16 26 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 27 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.40 2.00 8.60 -40.82 -0.35 1.65 16 30 H 0.09 0.97 7.58 -51.93 -0.39 0.58 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.09 1.45 7.00 -51.93 -0.36 1.09 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 1.43 7.69 -51.93 -0.40 1.03 16 36 H 0.08 1.46 7.94 -51.93 -0.41 1.04 16 37 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 39 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.10 1.03 5.93 -51.92 -0.31 0.72 16 42 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 350.03 15.07 5.27 5.27 Total: -1.00 -36.03 350.03 -8.04 -44.07 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -7.26 Total: -2.22 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -1.16 Total: -1.64 kcal Atomic # 7 Polarization: -42.14 SS G_CDS: -0.05 Total: -42.19 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: 0.17 Total: -19.82 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -36.03 -8.04 -44.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001124010410.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.683 kcal (2) G-P(sol) polarization free energy of solvation -36.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds