Wall clock time and date at job start Tue Mar 31 2020 06:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50700 * 120.00129 * 2 1 4 4 O 1.42900 * 109.47194 * 134.99689 * 3 2 1 5 5 C 1.42893 * 113.99943 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.46993 * 180.02562 * 5 4 3 7 7 O 1.21278 * 120.00332 * 0.28142 * 6 5 4 8 8 N 1.34778 * 120.00082 * 180.02562 * 6 5 4 9 9 C 1.46502 * 119.99971 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47008 * 179.97438 * 9 8 6 11 11 C 1.52996 * 109.47081 * 175.02103 * 10 9 8 12 12 C 1.53002 * 115.54988 * 278.03010 * 11 10 9 13 13 N 1.46503 * 109.47093 * 303.89866 * 12 11 10 14 14 C 1.36936 * 119.99878 * 175.59100 * 13 12 11 15 15 H 1.08003 * 120.00049 * 0.02562 * 14 13 12 16 16 C 1.38815 * 120.00086 * 180.02562 * 14 13 12 17 17 N 1.31623 * 119.99556 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00277 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.46893 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47300 * 119.99722 * 18 16 14 21 21 H 1.48498 * 109.47151 * 239.99914 * 18 16 14 22 22 C 1.53002 * 117.49930 * 132.32289 * 11 10 9 23 23 C 1.52996 * 117.50135 * 63.70068 * 11 10 9 24 24 H 1.07999 * 120.00352 * 180.02562 * 1 2 3 25 25 H 1.08003 * 120.00123 * 0.02562 * 1 2 3 26 26 H 1.08002 * 119.99627 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.47050 * 15.00331 * 3 2 1 28 28 H 1.09003 * 109.46790 * 255.00102 * 3 2 1 29 29 H 1.09003 * 109.46906 * 60.00853 * 5 4 3 30 30 H 1.08990 * 109.47654 * 300.00216 * 5 4 3 31 31 H 0.96997 * 119.99715 * 359.97438 * 8 6 5 32 32 H 1.08998 * 109.46565 * 299.99242 * 9 8 6 33 33 H 1.08995 * 109.47366 * 59.99575 * 9 8 6 34 34 H 1.09002 * 109.47289 * 295.02052 * 10 9 8 35 35 H 1.08997 * 109.47472 * 55.02059 * 10 9 8 36 36 H 1.08994 * 109.46881 * 63.89829 * 12 11 10 37 37 H 1.09002 * 109.46821 * 183.90185 * 12 11 10 38 38 H 0.97005 * 119.99882 * 355.59554 * 13 12 11 39 39 H 0.97004 * 119.99496 * 180.02562 * 17 16 14 40 40 H 1.09005 * 117.49730 * 0.02562 * 22 11 10 41 41 H 1.08999 * 117.50027 * 145.01652 * 22 11 10 42 42 H 1.09000 * 117.50494 * 214.98016 * 23 11 10 43 43 H 1.09006 * 117.49881 * 0.02562 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2413 0.9527 5 6 3.9084 2.4348 1.0321 6 6 4.9946 2.2563 2.0613 7 8 5.0931 1.2083 2.6635 8 7 5.8599 3.2596 2.3088 9 6 6.9162 3.0859 3.3090 10 6 7.7531 4.3639 3.3941 11 6 8.7765 4.2290 4.5233 12 6 8.2508 4.5254 5.9293 13 7 7.6699 5.8700 5.9600 14 6 7.0521 6.3231 7.0950 15 1 6.9934 5.6894 7.9676 16 6 6.5011 7.5969 7.1240 17 7 6.5731 8.3694 6.0607 18 14 5.6590 8.2153 8.6724 19 1 5.7125 7.1630 9.7189 20 1 6.3526 9.4345 9.1599 21 1 4.2420 8.5398 8.3693 22 6 10.2245 4.6147 4.2142 23 6 9.8443 3.1423 4.3830 24 1 -0.5401 -0.9353 0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8499 -0.9354 0.0004 27 1 1.3856 2.1161 0.2660 28 1 2.4755 1.4867 -0.9927 29 1 3.2689 3.2695 1.3193 30 1 4.3587 2.6395 0.0609 31 1 5.7836 4.0964 1.8243 32 1 6.4664 2.8804 4.2804 33 1 7.5557 2.2517 3.0209 34 1 8.2733 4.5212 2.4492 35 1 7.1001 5.2132 3.5951 36 1 7.4874 3.7937 6.1934 37 1 9.0719 4.4680 6.6438 38 1 7.7229 6.4393 5.1764 39 1 6.1885 9.2596 6.0811 40 1 10.4479 4.9649 3.2064 41 1 10.8029 5.0799 5.0125 42 1 10.1726 2.6388 5.2922 43 1 9.8180 2.5237 3.4859 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163799547.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:29 Heat of formation + Delta-G solvation = -29.485199 kcal Electronic energy + Delta-G solvation = -21488.169787 eV Core-core repulsion = 18149.224003 eV Total energy + Delta-G solvation = -3338.945784 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.79657 -38.40769 -37.78874 -34.77447 -34.11470 -33.93864 -30.82714 -30.46496 -28.18257 -26.04602 -25.66217 -23.24658 -22.71866 -21.80764 -20.77807 -20.21863 -18.53819 -17.37160 -17.06453 -16.87847 -16.61351 -15.81559 -15.38423 -15.22458 -14.78519 -14.37547 -14.35419 -13.83317 -13.50100 -13.24180 -13.02604 -12.70534 -12.47447 -12.39175 -12.27653 -11.86755 -11.41964 -11.29392 -11.12648 -10.93737 -10.85248 -10.58343 -10.26468 -10.12562 -9.92155 -9.80035 -9.65640 -9.59997 -9.32670 -8.98197 -8.84309 -6.90243 -5.76874 -3.04318 1.80429 2.63357 2.82561 3.43398 3.49667 3.51501 3.85885 4.06681 4.57910 4.61331 4.74455 4.78619 4.89010 4.95539 5.03164 5.04815 5.10267 5.16261 5.18815 5.33768 5.52715 5.54328 5.60473 5.69549 5.77772 5.91495 6.16517 6.19491 6.21446 6.23761 6.29478 6.43259 6.45463 6.46662 6.60301 6.77534 6.79513 6.84184 7.51989 7.71526 8.24911 8.42577 9.54296 10.12298 10.48028 11.46162 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.013468 B = 0.003294 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.550175 B = 8499.219988 C =10075.720775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.150 4.150 3 C 0.086 3.914 4 O -0.360 6.360 5 C 0.044 3.956 6 C 0.512 3.488 7 O -0.522 6.522 8 N -0.725 5.725 9 C 0.127 3.873 10 C -0.092 4.092 11 C -0.118 4.118 12 C 0.187 3.813 13 N -0.728 5.728 14 C -0.235 4.235 15 H 0.070 0.930 16 C -0.015 4.015 17 N -0.934 5.934 18 Si 0.906 3.094 19 H -0.280 1.280 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.166 4.166 23 C -0.178 4.178 24 H 0.105 0.895 25 H 0.098 0.902 26 H 0.118 0.882 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.401 0.599 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.090 0.910 36 H 0.026 0.974 37 H 0.018 0.982 38 H 0.384 0.616 39 H 0.253 0.747 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.809 -11.632 -15.486 19.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.168 4.168 3 C 0.009 3.991 4 O -0.278 6.278 5 C -0.036 4.036 6 C 0.296 3.704 7 O -0.397 6.397 8 N -0.379 5.379 9 C 0.005 3.995 10 C -0.130 4.130 11 C -0.119 4.119 12 C 0.059 3.941 13 N -0.372 5.372 14 C -0.367 4.367 15 H 0.088 0.912 16 C -0.211 4.211 17 N -0.583 5.583 18 Si 0.737 3.263 19 H -0.206 1.206 20 H -0.219 1.219 21 H -0.219 1.219 22 C -0.203 4.203 23 C -0.215 4.215 24 H 0.123 0.877 25 H 0.116 0.884 26 H 0.136 0.864 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.235 0.765 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.108 0.892 36 H 0.044 0.956 37 H 0.036 0.964 38 H 0.218 0.782 39 H 0.063 0.937 40 H 0.107 0.893 41 H 0.113 0.887 42 H 0.111 0.889 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.771 -12.574 -14.742 19.740 hybrid contribution -0.531 1.343 0.182 1.456 sum -4.303 -11.231 -14.560 18.885 Atomic orbital electron populations 1.23846 0.95512 1.02346 1.00008 1.22717 0.95623 0.98191 1.00234 1.21623 0.88844 0.96268 0.92315 1.88045 1.44276 1.34997 1.60455 1.22221 0.93384 0.89346 0.98697 1.20158 0.82386 0.84136 0.83699 1.90732 1.72115 1.26956 1.49911 1.45915 1.32208 1.17152 1.42591 1.21358 0.88192 0.98107 0.91877 1.21265 0.97170 0.97796 0.96730 1.21563 0.89740 1.03338 0.97297 1.20187 0.95215 0.88696 0.89959 1.42316 1.67732 1.11956 1.15199 1.19288 1.27834 0.97558 0.91977 0.91200 1.24713 1.01888 0.96935 0.97534 1.69670 1.51010 1.09501 1.28146 0.86128 0.79004 0.78519 0.82644 1.20568 1.21923 1.21919 1.22996 0.97785 0.97242 1.02319 1.22967 1.03981 0.91778 1.02791 0.87718 0.88367 0.86426 0.92456 0.92119 0.89990 0.90260 0.76500 0.90854 0.91770 0.91978 0.89162 0.95587 0.96423 0.78158 0.93666 0.89321 0.88701 0.88923 0.89205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.30 14.31 29.01 0.42 -0.89 16 2 C -0.15 -1.31 9.89 -36.03 -0.36 -1.67 16 3 C 0.09 0.76 6.35 36.01 0.23 0.99 16 4 O -0.36 -4.58 9.86 -55.14 -0.54 -5.12 16 5 C 0.04 0.45 6.42 36.01 0.23 0.69 16 6 C 0.51 7.29 7.91 -10.98 -0.09 7.21 16 7 O -0.52 -9.93 16.50 -14.35 -0.24 -10.17 16 8 N -0.73 -9.12 5.56 -60.30 -0.33 -9.46 16 9 C 0.13 1.84 5.49 -4.04 -0.02 1.81 16 10 C -0.09 -1.33 5.20 -26.73 -0.14 -1.47 16 11 C -0.12 -1.88 1.65 -154.51 -0.25 -2.14 16 12 C 0.19 3.78 6.15 -4.04 -0.02 3.76 16 13 N -0.73 -18.10 5.23 -59.91 -0.31 -18.42 16 14 C -0.24 -6.57 9.99 -15.06 -0.15 -6.72 16 15 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 16 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 17 N -0.93 -27.81 13.06 55.49 0.72 -27.09 16 18 Si 0.91 22.46 29.55 -169.99 -5.02 17.43 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 22 C -0.17 -2.39 9.87 -26.73 -0.26 -2.65 16 23 C -0.18 -2.36 9.57 -26.73 -0.26 -2.62 16 24 H 0.10 0.63 8.06 -52.49 -0.42 0.20 16 25 H 0.10 0.61 7.90 -52.48 -0.41 0.20 16 26 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 27 H 0.06 0.44 7.86 -51.93 -0.41 0.03 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.40 3.88 8.47 -40.82 -0.35 3.54 16 32 H 0.07 1.25 7.96 -51.93 -0.41 0.84 16 33 H 0.06 0.91 7.72 -51.93 -0.40 0.51 16 34 H 0.06 0.77 7.93 -51.93 -0.41 0.36 16 35 H 0.09 1.53 6.94 -51.93 -0.36 1.17 16 36 H 0.03 0.55 7.96 -51.93 -0.41 0.13 16 37 H 0.02 0.37 8.10 -51.93 -0.42 -0.05 16 38 H 0.38 9.93 6.80 -40.82 -0.28 9.65 16 39 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.09 1.14 8.07 -51.93 -0.42 0.72 16 41 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 42 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.09 1.06 7.90 -51.93 -0.41 0.65 16 LS Contribution 365.95 15.07 5.51 5.51 Total: -1.00 -34.17 365.95 -8.19 -42.36 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -7.20 Total: 9.15 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -0.77 Total: -4.21 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: 0.08 Total: -54.96 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -0.78 Total: -15.29 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.17 -8.19 -42.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163799547.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.878 kcal (2) G-P(sol) polarization free energy of solvation -34.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds