Wall clock time and date at job start Tue Mar 31 2020 07:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 119.99728 * 2 1 4 4 O 1.42903 * 109.46878 * 134.99713 * 3 2 1 5 5 C 1.42899 * 113.99629 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.47377 * 330.00266 * 5 4 3 7 7 C 1.53005 * 109.47197 * 90.00111 * 5 4 3 8 8 C 1.50706 * 109.47222 * 209.99898 * 5 4 3 9 9 O 1.21281 * 119.99657 * 0.02562 * 8 5 4 10 10 N 1.34779 * 120.00089 * 179.97438 * 8 5 4 11 11 C 1.47421 * 125.64948 * 0.03322 * 10 8 5 12 12 C 1.54907 * 104.82830 * 204.08827 * 11 10 8 13 13 C 1.55154 * 101.58608 * 322.98843 * 12 11 10 14 14 H 1.09001 * 110.71638 * 277.14209 * 13 12 11 15 15 N 1.46486 * 110.72305 * 153.86706 * 13 12 11 16 16 C 1.36939 * 120.00374 * 86.45286 * 15 13 12 17 17 H 1.08005 * 119.99636 * 0.02562 * 16 15 13 18 18 C 1.38810 * 120.00447 * 180.02562 * 16 15 13 19 19 N 1.31617 * 119.99815 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00197 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47104 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47158 * 119.99653 * 20 18 16 23 23 H 1.48498 * 109.47392 * 240.00064 * 20 18 16 24 24 C 1.47017 * 125.64436 * 179.71951 * 10 8 5 25 25 H 1.09007 * 109.88619 * 298.39708 * 24 10 8 26 26 C 1.52995 * 109.88662 * 59.56331 * 24 10 8 27 27 H 1.07994 * 120.00340 * 0.02562 * 1 2 3 28 28 H 1.07999 * 119.99510 * 180.02562 * 1 2 3 29 29 H 1.07993 * 120.00120 * 179.97438 * 2 1 3 30 30 H 1.09002 * 109.47060 * 254.99843 * 3 2 1 31 31 H 1.09001 * 109.47380 * 14.99931 * 3 2 1 32 32 H 1.09001 * 109.46830 * 59.99820 * 7 5 4 33 33 H 1.09006 * 109.46899 * 179.97438 * 7 5 4 34 34 H 1.08994 * 109.46766 * 299.99641 * 7 5 4 35 35 H 1.09007 * 110.36419 * 322.92072 * 11 10 8 36 36 H 1.08995 * 110.36663 * 85.24612 * 11 10 8 37 37 H 1.09007 * 111.00544 * 81.06357 * 12 11 10 38 38 H 1.09001 * 111.00461 * 204.87408 * 12 11 10 39 39 H 0.97009 * 120.00273 * 266.45565 * 15 13 12 40 40 H 0.97001 * 119.99875 * 180.02562 * 19 18 16 41 41 H 1.08997 * 109.47054 * 58.54496 * 26 24 10 42 42 H 1.09001 * 109.47408 * 178.54538 * 26 24 10 43 43 H 1.09004 * 109.47146 * 298.54371 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2413 0.9527 5 6 3.9083 2.4350 1.0321 6 1 3.9136 2.9311 0.0615 7 6 3.3040 3.3716 2.0803 8 6 5.3205 2.0855 1.4254 9 8 5.6275 0.9281 1.6182 10 7 6.2426 3.0590 1.5618 11 6 6.0072 4.5000 1.3584 12 6 7.4008 5.0854 1.0195 13 6 8.3238 4.2478 1.9436 14 1 8.3417 4.6645 2.9507 15 7 9.6776 4.1684 1.3898 16 6 10.5886 5.1533 1.6642 17 1 10.3090 5.9885 2.2894 18 6 11.8713 5.0783 1.1390 19 7 12.2121 4.0603 0.3776 20 14 13.1141 6.4215 1.5140 21 1 12.4875 7.4457 2.3879 22 1 14.2872 5.8310 2.2071 23 1 13.5558 7.0553 0.2458 24 6 7.6482 2.8602 1.9443 25 1 7.7027 2.4196 2.9399 26 6 8.3396 1.9473 0.9297 27 1 -0.5400 0.9352 -0.0004 28 1 -0.5399 -0.9353 0.0004 29 1 1.8500 -0.9352 0.0004 30 1 2.4755 1.4868 -0.9927 31 1 1.3855 2.1161 0.2660 32 1 3.2987 2.8755 3.0508 33 1 3.9006 4.2819 2.1411 34 1 2.2827 3.6244 1.7958 35 1 5.3174 4.6584 0.5294 36 1 5.6169 4.9529 2.2698 37 1 7.6479 4.9237 -0.0298 38 1 7.4516 6.1446 1.2719 39 1 9.9288 3.4181 0.8286 40 1 13.1086 4.0077 0.0109 41 1 8.2745 2.3926 -0.0631 42 1 9.3871 1.8254 1.2052 43 1 7.8497 0.9736 0.9240 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180264289.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:30 Heat of formation + Delta-G solvation = -34.523121 kcal Electronic energy + Delta-G solvation = -22731.752170 eV Core-core repulsion = 19392.587926 eV Total energy + Delta-G solvation = -3339.164244 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.28010 -38.47623 -37.09724 -34.43783 -34.13814 -32.22530 -30.91821 -30.60937 -28.69836 -26.48333 -25.24149 -24.54579 -23.34613 -22.13786 -20.44676 -19.77159 -18.64536 -17.53933 -17.36151 -16.60373 -16.05793 -15.60343 -15.39179 -14.91539 -14.59125 -13.96523 -13.89545 -13.61214 -13.50642 -13.07808 -12.95245 -12.51220 -12.45789 -12.34999 -12.10308 -11.66324 -11.61892 -11.49753 -11.21972 -11.15750 -10.99326 -10.84143 -10.46446 -10.32939 -10.19828 -9.98186 -9.72283 -9.61983 -9.28802 -8.97530 -8.40845 -7.04364 -5.83529 -3.13456 1.83619 2.75432 2.86499 3.39537 3.45165 3.47613 3.77795 4.43529 4.53366 4.65901 4.76014 4.77151 4.89168 4.99415 5.09090 5.17497 5.18138 5.30408 5.38841 5.48438 5.52038 5.54674 5.58499 5.62820 5.80414 5.90471 6.02606 6.09583 6.21444 6.26965 6.29554 6.33657 6.53148 6.55981 6.68295 6.79840 6.94766 6.98679 7.64933 7.73720 8.34353 8.36909 9.46674 10.01802 10.36614 11.39001 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.043990 B = 0.003208 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.349067 B = 8726.011548 C = 9042.658191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.146 4.146 3 C 0.085 3.915 4 O -0.353 6.353 5 C 0.075 3.925 6 H 0.085 0.915 7 C -0.177 4.177 8 C 0.528 3.472 9 O -0.522 6.522 10 N -0.607 5.607 11 C 0.094 3.906 12 C -0.154 4.154 13 C 0.174 3.826 14 H 0.063 0.937 15 N -0.717 5.717 16 C -0.244 4.244 17 H 0.072 0.928 18 C -0.011 4.011 19 N -0.931 5.931 20 Si 0.908 3.092 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.130 3.870 25 H 0.072 0.928 26 C -0.159 4.159 27 H 0.097 0.903 28 H 0.104 0.896 29 H 0.118 0.882 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.391 0.609 40 H 0.256 0.744 41 H 0.056 0.944 42 H 0.079 0.921 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.682 -0.853 -0.327 21.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.164 4.164 3 C 0.009 3.991 4 O -0.271 6.271 5 C 0.014 3.986 6 H 0.102 0.898 7 C -0.234 4.234 8 C 0.315 3.685 9 O -0.397 6.397 10 N -0.343 5.343 11 C -0.029 4.029 12 C -0.195 4.195 13 C 0.062 3.938 14 H 0.081 0.919 15 N -0.361 5.361 16 C -0.375 4.375 17 H 0.090 0.910 18 C -0.207 4.207 19 N -0.578 5.578 20 Si 0.739 3.261 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.219 1.219 24 C 0.027 3.973 25 H 0.090 0.910 26 C -0.217 4.217 27 H 0.115 0.885 28 H 0.122 0.878 29 H 0.136 0.864 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.229 0.771 40 H 0.066 0.934 41 H 0.075 0.925 42 H 0.098 0.902 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -21.404 -1.588 -0.059 21.463 hybrid contribution 0.685 0.824 -0.286 1.109 sum -20.719 -0.765 -0.345 20.736 Atomic orbital electron populations 1.23815 0.95475 1.02212 1.00556 1.22751 0.95575 0.98320 0.99742 1.21658 0.89013 0.96035 0.92426 1.88069 1.43803 1.35333 1.59921 1.21835 0.89711 0.87037 1.00028 0.89762 1.22372 1.01599 0.99674 0.99803 1.19884 0.85619 0.84891 0.78148 1.90700 1.80473 1.18902 1.49631 1.48523 1.10519 1.06892 1.68414 1.22507 0.99422 0.80735 1.00209 1.23568 0.92993 1.00547 1.02414 1.21167 0.86183 0.90515 0.95924 0.91910 1.42681 1.06306 1.27836 1.59276 1.19277 0.91615 1.00986 1.25583 0.90999 1.24763 0.97605 0.98214 1.00167 1.69669 1.19743 1.30788 1.37632 0.86106 0.81538 0.81030 0.77398 1.20517 1.21826 1.21861 1.21841 0.79128 0.98094 0.98246 0.90989 1.22008 1.01481 0.99347 0.98893 0.88483 0.87776 0.86360 0.92147 0.92644 0.91131 0.90091 0.91522 0.91433 0.91322 0.90616 0.90513 0.77069 0.93408 0.92521 0.90187 0.92114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.34 14.31 29.01 0.42 -0.93 16 2 C -0.15 -1.36 9.89 -36.03 -0.36 -1.71 16 3 C 0.08 0.83 6.16 36.01 0.22 1.05 16 4 O -0.35 -4.79 9.50 -55.14 -0.52 -5.32 16 5 C 0.08 0.92 2.49 -27.88 -0.07 0.85 16 6 H 0.08 0.85 7.49 -51.93 -0.39 0.46 16 7 C -0.18 -1.68 9.34 37.16 0.35 -1.33 16 8 C 0.53 8.54 7.08 -10.98 -0.08 8.46 16 9 O -0.52 -10.60 15.39 -14.35 -0.22 -10.82 16 10 N -0.61 -9.30 3.08 -163.01 -0.50 -9.80 16 11 C 0.09 1.16 5.13 -2.53 -0.01 1.15 16 12 C -0.15 -2.41 6.77 -24.59 -0.17 -2.58 16 13 C 0.17 3.28 3.45 -66.10 -0.23 3.05 16 14 H 0.06 1.17 8.12 -51.93 -0.42 0.75 16 15 N -0.72 -17.14 5.02 -51.65 -0.26 -17.40 16 16 C -0.24 -6.46 9.98 -15.06 -0.15 -6.61 16 17 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 18 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 19 N -0.93 -27.43 13.06 55.49 0.72 -26.71 16 20 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 C 0.13 2.32 3.49 -66.95 -0.23 2.08 16 25 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 26 C -0.16 -3.04 7.93 37.16 0.29 -2.75 16 27 H 0.10 0.59 7.90 -52.49 -0.41 0.18 16 28 H 0.10 0.63 8.06 -52.49 -0.42 0.21 16 29 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 30 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 31 H 0.06 0.43 7.59 -51.93 -0.39 0.04 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.68 5.00 -51.93 -0.26 0.42 16 34 H 0.07 0.50 7.87 -51.93 -0.41 0.09 16 35 H 0.07 0.68 7.36 -51.93 -0.38 0.29 16 36 H 0.07 0.72 7.07 -51.93 -0.37 0.35 16 37 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.39 9.94 4.94 -40.82 -0.20 9.74 16 40 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 41 H 0.06 1.10 8.05 -51.93 -0.42 0.68 16 42 H 0.08 1.65 6.73 -51.93 -0.35 1.30 16 43 H 0.06 1.18 6.74 -51.93 -0.35 0.83 16 LS Contribution 346.21 15.07 5.22 5.22 Total: -1.00 -32.18 346.21 -7.56 -39.73 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -6.86 Total: 8.02 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -0.11 Total: 0.32 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: -0.04 Total: -53.91 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -0.74 Total: -16.14 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.18 -7.56 -39.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180264289.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.210 kcal (2) G-P(sol) polarization free energy of solvation -32.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds