Wall clock time and date at job start Tue Mar 31 2020 06:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47377 * 2 1 4 4 O 1.42903 * 109.46857 * 179.97438 * 3 2 1 5 5 C 1.42906 * 113.99631 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.46662 * 179.97438 * 5 4 3 7 7 O 1.21281 * 120.00288 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99451 * 180.02562 * 6 5 4 9 9 C 1.47286 * 136.54720 * 359.97438 * 8 6 5 10 10 C 1.52793 * 87.32390 * 150.71790 * 9 8 6 11 11 H 1.09005 * 114.70489 * 142.41058 * 10 9 8 12 12 C 1.53065 * 111.38639 * 274.42729 * 10 9 8 13 13 C 1.53958 * 108.39658 * 144.15068 * 12 10 9 14 14 N 1.46537 * 107.57717 * 299.98395 * 13 12 10 15 15 C 1.36936 * 119.73598 * 237.77052 * 14 13 12 16 16 H 1.08005 * 119.99807 * 25.69020 * 15 14 13 17 17 C 1.38815 * 120.00333 * 205.69778 * 15 14 13 18 18 N 1.31618 * 120.00218 * 199.61347 * 17 15 14 19 19 Si 1.86801 * 119.99790 * 19.88518 * 17 15 14 20 20 H 1.48501 * 109.46965 * 274.60122 * 19 17 15 21 21 H 1.48505 * 109.47030 * 34.60323 * 19 17 15 22 22 H 1.48497 * 109.46933 * 154.60407 * 19 17 15 23 23 C 1.45701 * 120.52855 * 57.49331 * 14 13 12 24 24 C 1.46474 * 136.54054 * 180.02562 * 8 6 5 25 25 H 1.08992 * 111.43860 * 97.09513 * 24 8 6 26 26 H 1.08999 * 109.46916 * 60.00060 * 1 2 3 27 27 H 1.08999 * 109.47216 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47191 * 300.00418 * 1 2 3 29 29 H 1.08999 * 109.46682 * 239.99519 * 2 1 3 30 30 H 1.09005 * 109.46318 * 120.00278 * 2 1 3 31 31 H 1.09001 * 109.47302 * 59.99649 * 3 2 1 32 32 H 1.08999 * 109.47048 * 299.99859 * 3 2 1 33 33 H 1.08997 * 109.46974 * 59.99941 * 5 4 3 34 34 H 1.09002 * 109.46899 * 299.99710 * 5 4 3 35 35 H 1.09003 * 113.52993 * 266.07101 * 9 8 6 36 36 H 1.08996 * 113.52662 * 36.70004 * 9 8 6 37 37 H 1.09000 * 109.51274 * 262.82470 * 12 10 9 38 38 H 1.09002 * 109.51023 * 22.92714 * 12 10 9 39 39 H 1.08996 * 108.93131 * 181.12428 * 13 12 10 40 40 H 1.09005 * 111.13959 * 60.09737 * 13 12 10 41 41 H 0.96994 * 120.00041 * 179.97438 * 18 17 15 42 42 H 1.08998 * 108.78333 * 81.16260 * 23 14 13 43 43 H 1.09002 * 108.78879 * 199.48509 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4691 1.4423 0.0006 5 6 4.0504 2.7478 0.0012 6 6 5.5527 2.6287 0.0025 7 8 6.0742 1.5337 0.0032 8 7 6.3166 3.7390 0.0038 9 6 6.0882 5.1940 0.0039 10 6 7.4134 5.3298 0.7521 11 1 8.0111 6.1956 0.4667 12 6 7.2221 5.1620 2.2614 13 6 8.4522 4.4304 2.8288 14 7 8.5373 3.1271 2.1645 15 6 8.5235 1.9808 2.9134 16 1 8.0524 1.9764 3.8853 17 6 9.1151 0.8244 2.4237 18 7 8.7871 -0.3466 2.9270 19 14 10.3824 0.9311 1.0555 20 1 9.6913 0.9538 -0.2587 21 1 11.1812 2.1727 1.2163 22 1 11.2822 -0.2484 1.1213 23 6 8.6306 3.0409 0.7130 24 6 7.7493 4.0438 0.0047 25 1 8.1134 4.2501 -1.0017 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6768 1.9564 0.8899 32 1 1.6768 1.9563 -0.8900 33 1 3.7284 3.2884 0.8912 34 1 3.7292 3.2890 -0.8888 35 1 6.0896 5.6349 -0.9930 36 1 5.2284 5.4994 0.6002 37 1 7.1476 6.1431 2.7303 38 1 6.3095 4.5971 2.4521 39 1 8.3158 4.2884 3.9008 40 1 9.3654 4.9967 2.6457 41 1 9.2002 -1.1546 2.5846 42 1 9.6655 3.2125 0.4170 43 1 8.3386 2.0380 0.4014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221416183.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:20 Heat of formation + Delta-G solvation = -7.103698 kcal Electronic energy + Delta-G solvation = -23545.199851 eV Core-core repulsion = 20207.224602 eV Total energy + Delta-G solvation = -3337.975249 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.78234 -38.48747 -37.02569 -35.45844 -33.68904 -32.10575 -30.78717 -29.96934 -27.63257 -27.04094 -25.48880 -23.77903 -23.02906 -21.63886 -21.26061 -19.94565 -18.01104 -17.12754 -16.57010 -16.46477 -15.98569 -15.87733 -15.38176 -14.71609 -14.47143 -14.24577 -13.56097 -13.49337 -13.28442 -13.22606 -12.98406 -12.52895 -12.17153 -12.12123 -11.97485 -11.93535 -11.73193 -11.39585 -11.06837 -10.96677 -10.93737 -10.68271 -10.56439 -10.09357 -10.02316 -9.72155 -9.63859 -9.33303 -8.92822 -8.44296 -8.22845 -6.82030 -5.76259 -3.12734 2.84815 3.14759 3.51187 3.57983 3.62406 3.89277 4.52566 4.68793 4.71318 4.86638 4.97081 4.99818 5.05429 5.12929 5.23680 5.28222 5.33860 5.35564 5.40688 5.42740 5.54990 5.58895 5.61914 5.70445 5.85752 5.87148 5.92017 5.98945 6.05088 6.15320 6.20749 6.26767 6.39252 6.59102 6.65552 6.92456 6.97492 7.17827 8.13646 8.19382 8.49082 8.72884 9.12240 9.91725 10.21955 11.40245 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015508 B = 0.005867 C = 0.004802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.063951 B = 4771.375060 C = 5829.919011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.126 4.126 3 C 0.061 3.939 4 O -0.360 6.360 5 C 0.057 3.943 6 C 0.538 3.462 7 O -0.489 6.489 8 N -0.638 5.638 9 C 0.095 3.905 10 C -0.112 4.112 11 H 0.094 0.906 12 C -0.114 4.114 13 C 0.150 3.850 14 N -0.596 5.596 15 C -0.264 4.264 16 H 0.082 0.918 17 C 0.033 3.967 18 N -0.905 5.905 19 Si 0.885 3.115 20 H -0.285 1.285 21 H -0.276 1.276 22 H -0.305 1.305 23 C 0.116 3.884 24 C 0.128 3.872 25 H 0.078 0.922 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.048 0.952 32 H 0.046 0.954 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.029 0.971 41 H 0.261 0.739 42 H 0.022 0.978 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.797 13.151 -7.574 19.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C -0.016 4.016 4 O -0.278 6.278 5 C -0.023 4.023 6 C 0.325 3.675 7 O -0.361 6.361 8 N -0.378 5.378 9 C -0.028 4.028 10 C -0.131 4.131 11 H 0.112 0.888 12 C -0.154 4.154 13 C 0.024 3.976 14 N -0.319 5.319 15 C -0.392 4.392 16 H 0.099 0.901 17 C -0.166 4.166 18 N -0.548 5.548 19 Si 0.716 3.284 20 H -0.212 1.212 21 H -0.202 1.202 22 H -0.234 1.234 23 C -0.010 4.010 24 C 0.024 3.976 25 H 0.096 0.904 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.047 0.953 41 H 0.071 0.929 42 H 0.039 0.961 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.533 11.923 -7.553 18.875 hybrid contribution 0.414 0.300 -0.972 1.098 sum -12.119 12.222 -8.525 19.208 Atomic orbital electron populations 1.21689 0.94869 1.02172 1.01756 1.21456 0.95333 0.95570 1.03950 1.22588 0.80982 0.98174 0.99815 1.88066 1.19093 1.25339 1.95305 1.22046 0.92119 0.86509 1.01606 1.19546 0.87479 0.83012 0.77454 1.90836 1.73803 1.25093 1.46337 1.49422 1.08683 1.04971 1.74686 1.23106 0.99122 0.80753 0.99836 1.22604 0.96317 0.97359 0.96822 0.88794 1.21985 1.01180 0.99887 0.92318 1.20950 0.93674 0.86471 0.96551 1.43790 1.85973 1.02381 0.99778 1.18813 1.31430 0.86746 1.02221 0.90057 1.25159 0.98724 0.95176 0.97554 1.69819 1.43414 0.97150 1.44377 0.87039 0.82598 0.75980 0.82827 1.21243 1.20197 1.23386 1.20838 0.95120 0.99865 0.85211 1.22392 0.82535 0.94343 0.98326 0.90431 0.92743 0.92027 0.92570 0.91003 0.90657 0.93338 0.93582 0.90858 0.91193 0.90197 0.90868 0.92317 0.91543 0.91790 0.95308 0.92921 0.96052 0.88652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 37.16 0.37 -0.89 16 2 C -0.13 -1.46 6.30 -26.73 -0.17 -1.63 16 3 C 0.06 0.76 5.94 37.16 0.22 0.98 16 4 O -0.36 -6.35 9.88 -55.14 -0.54 -6.89 16 5 C 0.06 0.89 6.27 36.00 0.23 1.11 16 6 C 0.54 11.01 8.09 -10.99 -0.09 10.93 16 7 O -0.49 -13.12 15.74 -14.35 -0.23 -13.35 16 8 N -0.64 -11.22 3.27 -191.14 -0.62 -11.84 16 9 C 0.10 1.12 7.76 -12.21 -0.09 1.03 16 10 C -0.11 -1.54 4.47 -90.97 -0.41 -1.94 16 11 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 12 C -0.11 -1.77 5.72 -26.20 -0.15 -1.92 16 13 C 0.15 2.93 6.49 -3.52 -0.02 2.90 16 14 N -0.60 -14.89 2.80 -174.37 -0.49 -15.38 16 15 C -0.26 -7.91 9.95 -15.06 -0.15 -8.06 16 16 H 0.08 2.59 8.02 -52.48 -0.42 2.17 16 17 C 0.03 1.04 5.19 -17.43 -0.09 0.95 16 18 N -0.91 -30.09 13.97 55.49 0.78 -29.31 16 19 Si 0.88 24.50 24.01 -169.99 -4.08 20.41 16 20 H -0.29 -7.89 6.40 56.52 0.36 -7.53 16 21 H -0.28 -7.31 6.74 56.52 0.38 -6.93 16 22 H -0.31 -8.49 7.11 56.52 0.40 -8.09 16 23 C 0.12 2.75 3.90 -5.41 -0.02 2.73 16 24 C 0.13 2.31 4.10 -77.63 -0.32 1.99 16 25 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.73 8.01 -51.93 -0.42 0.32 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 1.16 7.64 -51.93 -0.40 0.76 16 39 H 0.06 1.26 7.87 -51.93 -0.41 0.85 16 40 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.26 8.29 8.31 -40.82 -0.34 7.95 16 42 H 0.02 0.52 5.93 -51.93 -0.31 0.21 16 43 H 0.10 2.69 3.75 -51.93 -0.19 2.50 16 LS Contribution 337.55 15.07 5.09 5.09 Total: -1.00 -38.52 337.55 -8.06 -46.58 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -7.26 Total: -3.49 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: -0.70 Total: 8.19 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: -0.34 Total: -56.53 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.77 Total: -20.24 kcal Atomic # 14 Polarization: 24.50 SS G_CDS: -4.08 Total: 20.41 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -38.52 -8.06 -46.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221416183.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.473 kcal (2) G-P(sol) polarization free energy of solvation -38.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds