Wall clock time and date at job start Tue Mar 31 2020 06:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 110.88479 * 2 1 4 4 C 1.55157 * 111.00231 * 236.08444 * 2 1 3 5 5 C 1.54323 * 102.86403 * 206.22700 * 4 2 1 6 6 H 1.08996 * 109.77531 * 141.88307 * 5 4 2 7 7 C 1.52993 * 109.98541 * 263.04869 * 5 4 2 8 8 N 1.47026 * 107.27279 * 22.52440 * 5 4 2 9 9 C 1.34769 * 125.64894 * 180.97119 * 8 5 4 10 10 O 1.21353 * 120.00161 * 359.70938 * 9 8 5 11 11 C 1.49452 * 120.00161 * 179.71978 * 9 8 5 12 12 O 1.21346 * 120.00041 * 359.97438 * 11 9 8 13 13 N 1.34777 * 119.99670 * 179.97438 * 11 9 8 14 14 C 1.46500 * 119.99746 * 179.97438 * 13 11 9 15 15 C 1.52996 * 109.47368 * 179.97438 * 14 13 11 16 16 C 1.53002 * 109.47346 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.46931 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00193 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99398 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00338 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99424 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46845 * 180.02562 * 21 19 17 23 23 H 1.48503 * 109.47399 * 299.99813 * 21 19 17 24 24 H 1.48498 * 109.47295 * 60.00420 * 21 19 17 25 25 C 1.47429 * 108.70205 * 0.70377 * 8 5 4 26 26 H 1.09000 * 109.47034 * 297.57010 * 1 2 3 27 27 H 1.08999 * 109.47379 * 57.56567 * 1 2 3 28 28 H 1.08997 * 109.47331 * 177.57094 * 1 2 3 29 29 H 1.09003 * 110.71997 * 324.78154 * 4 2 1 30 30 H 1.09000 * 110.72655 * 87.88268 * 4 2 1 31 31 H 1.09002 * 109.46920 * 179.33139 * 7 5 4 32 32 H 1.09004 * 109.47356 * 299.32407 * 7 5 4 33 33 H 1.09004 * 109.47521 * 59.32703 * 7 5 4 34 34 H 0.97003 * 120.00723 * 359.97438 * 13 11 9 35 35 H 1.09000 * 109.47175 * 59.99850 * 14 13 11 36 36 H 1.09004 * 109.47042 * 299.99808 * 14 13 11 37 37 H 1.09004 * 109.47368 * 59.99943 * 15 14 13 38 38 H 1.08996 * 109.47261 * 300.00328 * 15 14 13 39 39 H 1.09000 * 109.46986 * 60.00254 * 16 15 14 40 40 H 1.08992 * 109.46974 * 300.00318 * 16 15 14 41 41 H 0.97000 * 119.99706 * 359.97438 * 20 19 17 42 42 H 1.08999 * 110.36380 * 94.93874 * 25 8 5 43 43 H 1.09004 * 110.36404 * 217.14963 * 25 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0185 0.0000 4 6 2.0861 -0.8082 -1.2020 5 6 3.4691 -1.2690 -0.6958 6 1 3.6699 -2.2826 -1.0429 7 6 4.5550 -0.3177 -1.2024 8 7 3.4272 -1.2428 0.7736 9 6 4.4481 -1.5597 1.5943 10 8 5.5140 -1.9078 1.1304 11 6 4.2674 -1.4827 3.0759 12 8 3.2017 -1.1344 3.5399 13 7 5.2883 -1.8001 3.8966 14 6 5.1114 -1.7241 5.3489 15 6 6.4118 -2.1338 6.0432 16 6 6.2272 -2.0538 7.5599 17 6 7.5080 -2.4579 8.2438 18 1 8.3677 -2.7428 7.6555 19 6 7.5820 -2.4638 9.6206 20 7 6.5350 -2.1173 10.3370 21 14 9.1697 -2.9640 10.4682 22 1 8.9901 -2.8877 11.9403 23 1 9.5189 -4.3554 10.0842 24 1 10.2621 -2.0472 10.0541 25 6 2.0853 -0.8062 1.2005 26 1 -0.3633 0.4756 0.9110 27 1 -0.3634 0.5512 -0.8673 28 1 -0.3634 -1.0267 -0.0436 29 1 1.4467 -1.6636 -1.4205 30 1 2.1892 -0.1713 -2.0805 31 1 5.5262 -0.6440 -0.8305 32 1 4.5630 -0.3229 -2.2924 33 1 4.3494 0.6915 -0.8454 34 1 6.1402 -2.0789 3.5257 35 1 4.3099 -2.3973 5.6530 36 1 4.8548 -0.7029 5.6307 37 1 7.2136 -1.4609 5.7391 38 1 6.6681 -3.1550 5.7613 39 1 5.4254 -2.7264 7.8643 40 1 5.9712 -1.0324 7.8414 41 1 5.7107 -1.8572 9.8967 42 1 1.4519 -1.6699 1.4028 43 1 2.1559 -0.1729 2.0848 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322763777.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:35 Heat of formation + Delta-G solvation = -92.907033 kcal Electronic energy + Delta-G solvation = -22014.750675 eV Core-core repulsion = 18673.054714 eV Total energy + Delta-G solvation = -3341.695961 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.98473 -39.19780 -37.86298 -35.75428 -33.72225 -33.22280 -32.05256 -31.18570 -27.47076 -26.98569 -26.08887 -24.65887 -22.90790 -21.47750 -21.02383 -20.62108 -19.46116 -17.82296 -17.03588 -16.73152 -16.44888 -15.88889 -15.44616 -14.94744 -14.41869 -14.13691 -13.95616 -13.73807 -13.73190 -13.58409 -13.08122 -12.97948 -12.89313 -12.59906 -12.31663 -12.01898 -11.93779 -11.72746 -11.54970 -11.07080 -11.03534 -10.95537 -10.86751 -10.80187 -10.17783 -10.05344 -9.96948 -9.44161 -9.11546 -8.94725 -8.59170 -8.34872 -6.38211 -4.08019 1.40529 2.20319 3.18882 3.42609 3.44364 3.45518 3.64331 4.07295 4.15798 4.39913 4.48590 4.53925 4.70324 4.95568 4.97443 5.05798 5.24296 5.29876 5.38609 5.38917 5.43067 5.48165 5.51886 5.58207 5.60238 5.69090 5.77610 5.88813 5.91372 5.95598 6.07160 6.21651 6.40802 6.59277 6.78884 6.98940 7.26850 7.32584 7.44887 7.68238 8.01686 8.16929 8.43468 8.85766 9.64348 11.02608 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.038175 B = 0.002660 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.289206 B =10525.387325 C =11130.068711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.109 4.109 3 H 0.085 0.915 4 C -0.125 4.125 5 C 0.132 3.868 6 H 0.079 0.921 7 C -0.165 4.165 8 N -0.590 5.590 9 C 0.522 3.478 10 O -0.521 6.521 11 C 0.503 3.497 12 O -0.522 6.522 13 N -0.692 5.692 14 C 0.114 3.886 15 C -0.116 4.116 16 C 0.012 3.988 17 C -0.604 4.604 18 H 0.049 0.951 19 C 0.014 3.986 20 N -0.912 5.912 21 Si 1.070 2.930 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.288 1.288 25 C 0.100 3.900 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.411 0.589 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.011 0.989 40 H 0.011 0.989 41 H 0.269 0.731 42 H 0.073 0.927 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.761 3.912 -25.067 27.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.128 4.128 3 H 0.103 0.897 4 C -0.163 4.163 5 C 0.029 3.971 6 H 0.097 0.903 7 C -0.222 4.222 8 N -0.324 5.324 9 C 0.305 3.695 10 O -0.397 6.397 11 C 0.283 3.717 12 O -0.399 6.399 13 N -0.344 5.344 14 C -0.008 4.008 15 C -0.154 4.154 16 C -0.026 4.026 17 C -0.642 4.642 18 H 0.068 0.932 19 C -0.189 4.189 20 N -0.548 5.548 21 Si 0.898 3.102 22 H -0.207 1.207 23 H -0.214 1.214 24 H -0.214 1.214 25 C -0.022 4.022 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.247 0.753 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.029 0.971 40 H 0.029 0.971 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.169 3.732 -23.410 25.794 hybrid contribution -0.314 0.047 -1.718 1.747 sum -10.483 3.779 -25.127 27.487 Atomic orbital electron populations 1.21685 0.93464 1.02328 1.02340 1.22430 0.96477 0.99509 0.94366 0.89669 1.22825 0.94668 1.00496 0.98294 1.21674 0.96183 1.00223 0.79008 0.90294 1.22159 0.99764 0.99245 1.01080 1.48344 1.12655 1.64907 1.06514 1.19982 0.83382 0.78589 0.87528 1.90744 1.25488 1.46193 1.77274 1.19960 0.84987 0.79524 0.87230 1.90703 1.25867 1.46166 1.77206 1.46031 1.15058 1.65460 1.07819 1.21824 1.00530 1.02177 0.76250 1.21787 0.93993 1.00820 0.98772 1.19155 0.97885 0.96543 0.89017 1.22018 0.98259 1.50011 0.93941 0.93217 1.25873 1.03633 0.94704 0.94728 1.70785 1.03103 1.41932 1.38980 0.83535 0.74220 0.76292 0.76187 1.20746 1.21425 1.21420 1.22771 0.81816 0.99314 0.98334 0.91945 0.92121 0.92244 0.90271 0.89699 0.90897 0.91466 0.92359 0.75286 0.91185 0.91190 0.92258 0.92248 0.97115 0.97114 0.92051 0.90830 0.87934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 9.29 37.16 0.35 -0.43 16 2 C -0.11 -0.75 3.64 -88.48 -0.32 -1.07 16 3 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 4 C -0.12 -0.77 5.97 -24.90 -0.15 -0.92 16 5 C 0.13 1.18 3.48 -66.95 -0.23 0.95 16 6 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 7 C -0.16 -1.43 9.07 37.15 0.34 -1.10 16 8 N -0.59 -6.78 3.08 -163.52 -0.50 -7.29 16 9 C 0.52 7.40 7.69 -11.59 -0.09 7.31 16 10 O -0.52 -8.18 15.38 5.49 0.08 -8.10 16 11 C 0.50 7.76 7.86 -11.58 -0.09 7.67 16 12 O -0.52 -8.77 13.78 5.50 0.08 -8.70 16 13 N -0.69 -10.65 5.55 -60.73 -0.34 -10.99 16 14 C 0.11 1.98 5.67 -4.04 -0.02 1.95 16 15 C -0.12 -2.29 5.27 -26.73 -0.14 -2.43 16 16 C 0.01 0.29 4.28 -27.88 -0.12 0.17 16 17 C -0.60 -17.14 9.11 -34.44 -0.31 -17.46 16 18 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 19 C 0.01 0.42 5.46 -17.82 -0.10 0.32 16 20 N -0.91 -28.04 13.65 55.43 0.76 -27.28 16 21 Si 1.07 25.31 29.90 -169.99 -5.08 20.22 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 25 C 0.10 0.99 5.54 -2.53 -0.01 0.97 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.31 8.11 -51.93 -0.42 -0.11 16 29 H 0.08 0.43 8.01 -51.93 -0.42 0.01 16 30 H 0.08 0.40 7.84 -51.93 -0.41 0.00 16 31 H 0.07 0.81 6.75 -51.93 -0.35 0.46 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.41 5.86 7.94 -40.82 -0.32 5.53 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.01 0.28 8.01 -51.93 -0.42 -0.14 16 40 H 0.01 0.28 8.01 -51.93 -0.42 -0.14 16 41 H 0.27 8.21 7.22 -40.82 -0.29 7.92 16 42 H 0.07 0.72 8.04 -51.93 -0.42 0.30 16 43 H 0.10 1.19 6.15 -51.93 -0.32 0.87 16 LS Contribution 350.23 15.07 5.28 5.28 Total: -1.00 -32.38 350.23 -7.85 -40.23 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -7.21 Total: 0.68 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: -0.91 Total: -4.06 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: -0.08 Total: -45.56 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: 0.16 Total: -16.79 kcal Atomic # 14 Polarization: 25.31 SS G_CDS: -5.08 Total: 20.22 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.38 -7.85 -40.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322763777.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.679 kcal (2) G-P(sol) polarization free energy of solvation -32.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds