Wall clock time and date at job start Tue Mar 31 2020 06:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08992 * 110.88846 * 2 1 4 4 C 1.55154 * 111.00133 * 236.07895 * 2 1 3 5 5 C 1.54326 * 102.94329 * 206.42072 * 4 2 1 6 6 H 1.08996 * 109.88725 * 262.77774 * 5 4 2 7 7 C 1.53002 * 110.01134 * 141.68233 * 5 4 2 8 8 N 1.47024 * 107.26637 * 22.19553 * 5 4 2 9 9 C 1.34776 * 125.64356 * 181.09218 * 8 5 4 10 10 O 1.21348 * 120.00232 * 359.97438 * 9 8 5 11 11 C 1.49458 * 119.99862 * 179.97438 * 9 8 5 12 12 O 1.21348 * 119.99906 * 359.97438 * 11 9 8 13 13 N 1.34776 * 119.99862 * 180.02562 * 11 9 8 14 14 C 1.46506 * 119.99571 * 179.97438 * 13 11 9 15 15 C 1.52999 * 109.46898 * 180.02562 * 14 13 11 16 16 C 1.52993 * 109.47261 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.47471 * 180.02562 * 16 15 14 18 18 H 1.07997 * 119.99814 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00080 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99674 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99943 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.46956 * 90.00592 * 21 19 17 23 23 H 1.48505 * 109.46977 * 210.00297 * 21 19 17 24 24 H 1.48493 * 109.47325 * 330.00374 * 21 19 17 25 25 C 1.47418 * 108.70570 * 1.05952 * 8 5 4 26 26 H 1.09001 * 109.47002 * 297.56794 * 1 2 3 27 27 H 1.08993 * 109.46955 * 57.57232 * 1 2 3 28 28 H 1.09000 * 109.47050 * 177.57060 * 1 2 3 29 29 H 1.08997 * 110.72608 * 324.78882 * 4 2 1 30 30 H 1.08999 * 110.72184 * 88.06171 * 4 2 1 31 31 H 1.09002 * 109.47076 * 300.66838 * 7 5 4 32 32 H 1.09001 * 109.47215 * 60.66303 * 7 5 4 33 33 H 1.08997 * 109.47133 * 180.66250 * 7 5 4 34 34 H 0.96998 * 120.00297 * 0.02562 * 13 11 9 35 35 H 1.08999 * 109.47036 * 299.99839 * 14 13 11 36 36 H 1.08989 * 109.47166 * 60.00091 * 14 13 11 37 37 H 1.09002 * 109.47408 * 299.99965 * 15 14 13 38 38 H 1.09003 * 109.47268 * 59.99949 * 15 14 13 39 39 H 1.09008 * 109.47318 * 300.00205 * 16 15 14 40 40 H 1.09003 * 109.46967 * 59.99830 * 16 15 14 41 41 H 0.97003 * 119.99296 * 179.97438 * 20 19 17 42 42 H 1.09003 * 110.36751 * 217.03565 * 25 8 5 43 43 H 1.08999 * 110.46166 * 94.75728 * 25 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0861 -0.8083 -1.2020 5 6 3.4675 -1.2744 -0.6957 6 1 4.2426 -0.6001 -1.0598 7 6 3.7486 -2.6989 -1.1780 8 7 3.4272 -1.2428 0.7737 9 6 4.4481 -1.5598 1.5944 10 8 5.5140 -1.9080 1.1304 11 6 4.2676 -1.4825 3.0760 12 8 3.2019 -1.1339 3.5400 13 7 5.2887 -1.7990 3.8967 14 6 5.1119 -1.7227 5.3490 15 6 6.4130 -2.1300 6.0433 16 6 6.2286 -2.0497 7.5599 17 6 7.5103 -2.4503 8.2438 18 1 8.3703 -2.7342 7.6555 19 6 7.5847 -2.4554 9.6206 20 7 8.7032 -2.8055 10.2173 21 14 6.0969 -1.9650 10.6381 22 1 5.2757 -3.1684 10.9261 23 1 6.5493 -1.3573 11.9154 24 1 5.2831 -0.9796 9.8820 25 6 2.0853 -0.8063 1.2005 26 1 -0.3633 0.4756 0.9110 27 1 -0.3633 0.5510 -0.8674 28 1 -0.3633 -1.0267 -0.0436 29 1 1.4468 -1.6636 -1.4205 30 1 2.1922 -0.1707 -2.0796 31 1 2.9742 -3.3686 -0.8040 32 1 3.7514 -2.7196 -2.2679 33 1 4.7204 -3.0233 -0.8060 34 1 6.1410 -2.0766 3.5258 35 1 4.8545 -0.7016 5.6305 36 1 4.3109 -2.3963 5.6533 37 1 6.6708 -3.1510 5.7618 38 1 7.2137 -1.4560 5.7389 39 1 5.9709 -1.0285 7.8411 40 1 5.4277 -2.7235 7.8647 41 1 8.7556 -2.8087 11.1860 42 1 2.1561 -0.1713 2.0837 43 1 1.4509 -1.6689 1.4042 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322763778.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:39 Heat of formation + Delta-G solvation = -85.719854 kcal Electronic energy + Delta-G solvation = -22019.724409 eV Core-core repulsion = 18678.340107 eV Total energy + Delta-G solvation = -3341.384301 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.97346 -39.18625 -37.85805 -35.74281 -33.52245 -33.19590 -32.05436 -31.47741 -27.75441 -27.40096 -26.15767 -24.83022 -22.76998 -21.23194 -20.88679 -20.56104 -19.42744 -17.73249 -17.38855 -16.72453 -16.38667 -15.86517 -15.29584 -14.87988 -14.51682 -14.35786 -14.15990 -13.94950 -13.67719 -13.41584 -13.17339 -13.00357 -12.72559 -12.47304 -12.30406 -12.08505 -11.97540 -11.93636 -11.63308 -11.13244 -11.11934 -11.03327 -10.92467 -10.91472 -10.15353 -9.95860 -9.77454 -9.40305 -9.24116 -9.12183 -8.95009 -8.56507 -6.06879 -4.05844 1.40348 2.20174 3.18604 3.30176 3.37764 3.41299 3.43138 4.06387 4.15176 4.39480 4.43276 4.46491 4.77565 4.89866 4.95539 5.09756 5.19424 5.26503 5.26829 5.39141 5.44051 5.44224 5.48236 5.56753 5.64045 5.67853 5.77498 5.85542 5.92973 5.94483 6.04134 6.19437 6.38786 6.56019 6.73839 6.98853 7.19589 7.26780 7.33147 7.67923 7.74552 8.01396 8.49644 8.97310 9.54937 11.06380 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033296 B = 0.002839 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.749838 B = 9860.424338 C =10566.016298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.110 4.110 3 H 0.085 0.915 4 C -0.124 4.124 5 C 0.131 3.869 6 H 0.080 0.920 7 C -0.164 4.164 8 N -0.590 5.590 9 C 0.521 3.479 10 O -0.520 6.520 11 C 0.504 3.496 12 O -0.523 6.523 13 N -0.692 5.692 14 C 0.112 3.888 15 C -0.115 4.115 16 C -0.010 4.010 17 C -0.523 4.523 18 H 0.072 0.928 19 C 0.066 3.934 20 N -0.902 5.902 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.265 1.265 25 C 0.101 3.899 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.412 0.588 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.019 0.981 40 H 0.015 0.985 41 H 0.263 0.737 42 H 0.103 0.897 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.328 4.819 -24.533 29.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 H 0.104 0.896 4 C -0.162 4.162 5 C 0.029 3.971 6 H 0.098 0.902 7 C -0.222 4.222 8 N -0.325 5.325 9 C 0.305 3.695 10 O -0.396 6.396 11 C 0.284 3.716 12 O -0.400 6.400 13 N -0.343 5.343 14 C -0.010 4.010 15 C -0.153 4.153 16 C -0.048 4.048 17 C -0.561 4.561 18 H 0.091 0.909 19 C -0.135 4.135 20 N -0.541 5.541 21 Si 0.708 3.292 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.189 1.189 25 C -0.022 4.022 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.248 0.752 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.038 0.962 40 H 0.033 0.967 41 H 0.073 0.927 42 H 0.121 0.879 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.348 4.827 -24.188 29.591 hybrid contribution -0.241 0.037 0.518 0.573 sum -16.589 4.864 -23.670 29.311 Atomic orbital electron populations 1.21683 0.93456 1.02316 1.02329 1.22439 0.96530 0.99509 0.94433 0.89635 1.22842 0.94817 1.00431 0.98144 1.21699 0.98296 0.98067 0.79055 0.90218 1.22154 1.03293 0.95506 1.01278 1.48346 1.12669 1.64879 1.06561 1.19984 0.83365 0.78645 0.87535 1.90750 1.25538 1.46042 1.77268 1.19956 0.84972 0.79481 0.87236 1.90700 1.25909 1.46212 1.77218 1.46015 1.15061 1.65489 1.07780 1.21835 1.00528 1.02211 0.76396 1.21741 0.94113 1.01387 0.98084 1.19501 0.97965 0.96935 0.90403 1.21093 0.97561 1.45643 0.91773 0.90939 1.25034 0.95880 0.94615 0.97970 1.69917 1.26089 1.48495 1.09616 0.86769 0.83393 0.79367 0.79712 1.20244 1.21368 1.18909 1.22746 0.81876 0.99259 0.98284 0.91954 0.92122 0.92261 0.90109 0.89856 0.92369 0.91418 0.90986 0.75172 0.91144 0.91142 0.91826 0.91799 0.96249 0.96687 0.92680 0.87933 0.90898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.73 9.29 37.16 0.35 -0.39 16 2 C -0.11 -0.73 3.64 -88.47 -0.32 -1.05 16 3 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 4 C -0.12 -0.74 5.95 -24.90 -0.15 -0.89 16 5 C 0.13 1.15 3.45 -66.95 -0.23 0.92 16 6 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 7 C -0.16 -1.40 9.11 37.16 0.34 -1.07 16 8 N -0.59 -6.60 3.07 -163.52 -0.50 -7.10 16 9 C 0.52 7.19 7.71 -11.58 -0.09 7.10 16 10 O -0.52 -8.03 15.51 5.50 0.09 -7.94 16 11 C 0.50 7.47 7.86 -11.58 -0.09 7.38 16 12 O -0.52 -8.43 13.78 5.50 0.08 -8.35 16 13 N -0.69 -10.15 5.55 -60.73 -0.34 -10.49 16 14 C 0.11 1.82 5.67 -4.04 -0.02 1.79 16 15 C -0.12 -2.15 5.27 -26.74 -0.14 -2.29 16 16 C -0.01 -0.23 4.04 -27.89 -0.11 -0.35 16 17 C -0.52 -14.71 9.66 -34.44 -0.33 -15.05 16 18 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 19 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 20 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 21 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 25 C 0.10 0.96 5.53 -2.53 -0.01 0.95 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.30 8.11 -51.93 -0.42 -0.12 16 29 H 0.08 0.43 7.73 -51.93 -0.40 0.03 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.79 6.87 -51.93 -0.36 0.43 16 34 H 0.41 5.62 7.94 -40.82 -0.32 5.30 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.07 1.15 8.14 -51.94 -0.42 0.73 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.02 0.45 7.20 -51.92 -0.37 0.07 16 40 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 41 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 42 H 0.10 1.15 6.16 -51.93 -0.32 0.83 16 43 H 0.07 0.69 8.03 -51.93 -0.42 0.27 16 LS Contribution 348.21 15.07 5.25 5.25 Total: -1.00 -32.09 348.21 -7.49 -39.58 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -7.24 Total: 0.23 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -0.92 Total: -1.11 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: -0.06 Total: -44.58 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: 0.16 Total: -16.29 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.09 -7.49 -39.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322763778.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.139 kcal (2) G-P(sol) polarization free energy of solvation -32.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds