Wall clock time and date at job start Tue Mar 31 2020 06:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.89041 * 2 1 4 4 C 1.55158 * 111.00874 * 123.88547 * 2 1 3 5 5 C 1.54319 * 102.94445 * 153.57827 * 4 2 1 6 6 H 1.09002 * 109.88202 * 218.23678 * 5 4 2 7 7 C 1.52997 * 109.88474 * 97.22778 * 5 4 2 8 8 N 1.47028 * 107.27161 * 337.80434 * 5 4 2 9 9 C 1.34773 * 125.64476 * 179.00125 * 8 5 4 10 10 O 1.21347 * 120.00518 * 359.97438 * 9 8 5 11 11 C 1.49456 * 119.99419 * 180.02562 * 9 8 5 12 12 O 1.21347 * 120.00063 * 359.97438 * 11 9 8 13 13 N 1.34781 * 119.99577 * 180.02562 * 11 9 8 14 14 C 1.46501 * 119.99533 * 180.02562 * 13 11 9 15 15 C 1.53002 * 109.46834 * 179.97438 * 14 13 11 16 16 C 1.53004 * 109.47140 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.46881 * 180.02562 * 16 15 14 18 18 H 1.07992 * 120.00401 * 0.02562 * 17 16 15 19 19 C 1.37872 * 119.99640 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00435 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00059 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47201 * 60.00097 * 21 19 17 23 23 H 1.48501 * 109.47386 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47061 * 300.00103 * 21 19 17 25 25 C 1.47471 * 108.71990 * 358.97693 * 8 5 4 26 26 H 1.09002 * 109.47153 * 299.29483 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.29674 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.29655 * 1 2 3 29 29 H 1.08998 * 110.71658 * 271.94406 * 4 2 1 30 30 H 1.09001 * 110.71572 * 35.20546 * 4 2 1 31 31 H 1.08993 * 109.47360 * 59.99833 * 7 5 4 32 32 H 1.09001 * 109.46958 * 180.02562 * 7 5 4 33 33 H 1.09000 * 109.46792 * 299.99464 * 7 5 4 34 34 H 0.97001 * 120.00261 * 359.97438 * 13 11 9 35 35 H 1.08998 * 109.47222 * 299.99238 * 14 13 11 36 36 H 1.08992 * 109.47351 * 59.99547 * 14 13 11 37 37 H 1.08998 * 109.47081 * 299.99920 * 15 14 13 38 38 H 1.09006 * 109.46924 * 59.99723 * 15 14 13 39 39 H 1.09006 * 109.46999 * 299.99919 * 16 15 14 40 40 H 1.08992 * 109.46968 * 60.00190 * 16 15 14 41 41 H 0.97000 * 120.00529 * 179.97438 * 20 19 17 42 42 H 1.08997 * 110.34769 * 265.24869 * 25 8 5 43 43 H 1.09000 * 110.40110 * 142.91615 * 25 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0862 -0.8076 1.2024 5 6 3.4675 -1.2738 0.6964 6 1 3.6663 -2.2880 1.0430 7 6 4.5555 -0.3271 1.2069 8 7 3.4272 -1.2433 -0.7731 9 6 4.4476 -1.5624 -1.5936 10 8 5.5132 -1.9110 -1.1295 11 6 4.2669 -1.4859 -3.0752 12 8 3.2014 -1.1368 -3.5393 13 7 5.2872 -1.8056 -3.8958 14 6 5.1103 -1.7300 -5.3482 15 6 6.4104 -2.1411 -6.0423 16 6 6.2255 -2.0628 -7.5591 17 6 7.5058 -2.4683 -8.2428 18 1 8.3652 -2.7538 -7.6544 19 6 7.5796 -2.4759 -9.6195 20 7 6.5326 -2.1297 -10.3361 21 14 9.1664 -2.9792 -10.4670 22 1 9.5137 -4.3706 -10.0815 23 1 8.9870 -2.9031 -11.9392 24 1 10.2600 -2.0636 -10.0542 25 6 2.0852 -0.8061 -1.2007 26 1 -0.3633 0.5028 0.8962 27 1 -0.3633 -1.0276 -0.0126 28 1 -0.3634 0.5247 -0.8836 29 1 2.1922 -0.1693 2.0796 30 1 1.4468 -1.6627 1.4215 31 1 4.5537 -0.3255 2.2968 32 1 5.5277 -0.6622 0.8453 33 1 4.3604 0.6812 0.8417 34 1 6.1388 -2.0849 -3.5248 35 1 4.3077 -2.4020 -5.6519 36 1 4.8553 -0.7086 -5.6305 37 1 7.2127 -1.4688 -5.7385 38 1 6.6657 -3.1625 -5.7599 39 1 5.4231 -2.7354 -7.8625 40 1 5.9700 -1.0416 -7.8417 41 1 6.5846 -2.1347 -11.3047 42 1 1.4519 -1.6698 -1.4032 43 1 2.1559 -0.1711 -2.0838 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322763779.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:42 Heat of formation + Delta-G solvation = -89.052327 kcal Electronic energy + Delta-G solvation = -21979.326738 eV Core-core repulsion = 18637.797929 eV Total energy + Delta-G solvation = -3341.528808 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.93427 -39.13927 -37.81737 -35.62211 -33.47656 -33.13849 -32.02089 -31.23805 -27.48378 -27.15514 -26.09453 -24.79803 -22.95657 -21.41183 -20.84702 -20.47360 -19.36312 -17.76734 -16.92895 -16.41031 -16.35778 -15.83481 -15.37568 -14.86292 -14.47285 -14.31892 -14.09414 -13.87773 -13.68630 -13.51383 -13.04389 -12.85550 -12.57294 -12.30285 -12.28506 -11.98586 -11.89142 -11.79009 -11.57391 -11.02907 -10.99174 -10.89274 -10.84171 -10.75362 -10.62662 -9.89747 -9.68046 -9.31223 -9.13676 -9.04980 -8.88871 -8.37733 -6.02643 -4.05759 1.45930 2.25465 3.24453 3.32571 3.37041 3.39216 3.49017 4.10572 4.19559 4.43093 4.44578 4.53993 4.73204 4.98487 5.00449 5.08673 5.27599 5.32378 5.33218 5.41079 5.46145 5.54978 5.59903 5.63681 5.69447 5.71963 5.80733 5.92026 5.94195 6.08182 6.10581 6.31086 6.54322 6.72015 6.95279 7.03636 7.33306 7.61407 7.73360 7.73984 7.95632 8.08410 8.36929 9.00562 9.58568 11.08626 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.038198 B = 0.002651 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.849586 B =10561.314419 C =11166.272583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.109 4.109 3 H 0.085 0.915 4 C -0.125 4.125 5 C 0.132 3.868 6 H 0.079 0.921 7 C -0.165 4.165 8 N -0.590 5.590 9 C 0.522 3.478 10 O -0.522 6.522 11 C 0.502 3.498 12 O -0.523 6.523 13 N -0.692 5.692 14 C 0.115 3.885 15 C -0.123 4.123 16 C 0.025 3.975 17 C -0.523 4.523 18 H 0.056 0.944 19 C 0.057 3.943 20 N -0.895 5.895 21 Si 0.894 3.106 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C 0.100 3.900 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.411 0.589 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.020 0.980 40 H 0.020 0.980 41 H 0.262 0.738 42 H 0.073 0.927 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.963 3.998 24.514 27.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.128 4.128 3 H 0.103 0.897 4 C -0.163 4.163 5 C 0.029 3.971 6 H 0.097 0.903 7 C -0.222 4.222 8 N -0.325 5.325 9 C 0.305 3.695 10 O -0.398 6.398 11 C 0.282 3.718 12 O -0.400 6.400 13 N -0.343 5.343 14 C -0.007 4.007 15 C -0.161 4.161 16 C -0.013 4.013 17 C -0.562 4.562 18 H 0.074 0.926 19 C -0.144 4.144 20 N -0.534 5.534 21 Si 0.722 3.278 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.202 1.202 25 C -0.022 4.022 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.247 0.753 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.071 0.929 42 H 0.092 0.908 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.136 4.049 24.156 26.905 hybrid contribution 1.243 -0.429 -0.412 1.378 sum -9.893 3.620 23.744 25.976 Atomic orbital electron populations 1.21686 0.93485 1.02354 1.02286 1.22432 0.96457 0.99518 0.94387 0.89682 1.22824 0.94706 1.00458 0.98297 1.21671 0.96165 1.00200 0.79071 0.90311 1.22162 0.99776 0.99310 1.00999 1.48356 1.12740 1.64892 1.06470 1.20022 0.83361 0.78514 0.87597 1.90739 1.25507 1.46211 1.77293 1.19947 0.85042 0.79609 0.87169 1.90704 1.25879 1.46207 1.77175 1.46068 1.15028 1.65291 1.07949 1.21834 1.00651 1.02271 0.75983 1.21930 0.93896 1.00573 0.99675 1.19025 0.97473 0.97660 0.87104 1.21166 0.98082 1.45523 0.91394 0.92623 1.25022 0.96431 0.95335 0.97636 1.69951 1.29267 1.48182 1.05953 0.86630 0.83723 0.79148 0.78333 1.20216 1.21273 1.20223 1.22778 0.81811 0.99282 0.98309 0.92146 0.92241 0.91954 0.89718 0.90305 0.91510 0.90907 0.92369 0.75349 0.91114 0.91133 0.92442 0.92442 0.96208 0.96209 0.92852 0.90831 0.87898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 9.29 37.16 0.35 -0.43 16 2 C -0.11 -0.76 3.64 -88.47 -0.32 -1.08 16 3 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 4 C -0.12 -0.78 5.96 -24.90 -0.15 -0.93 16 5 C 0.13 1.19 3.49 -66.95 -0.23 0.95 16 6 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 7 C -0.16 -1.44 9.05 37.16 0.34 -1.11 16 8 N -0.59 -6.82 3.08 -163.48 -0.50 -7.33 16 9 C 0.52 7.42 7.70 -11.58 -0.09 7.33 16 10 O -0.52 -8.21 15.39 5.50 0.08 -8.12 16 11 C 0.50 7.78 7.86 -11.58 -0.09 7.69 16 12 O -0.52 -8.82 13.78 5.50 0.08 -8.74 16 13 N -0.69 -10.65 5.55 -60.73 -0.34 -10.99 16 14 C 0.11 1.98 5.67 -4.04 -0.02 1.96 16 15 C -0.12 -2.41 5.27 -26.73 -0.14 -2.55 16 16 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 17 C -0.52 -14.62 9.11 -34.44 -0.31 -14.94 16 18 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -26.76 13.29 55.43 0.74 -26.02 16 21 Si 0.89 21.56 29.54 -169.99 -5.02 16.53 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 C 0.10 1.00 5.53 -2.50 -0.01 0.99 16 26 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 0.32 8.13 -51.93 -0.42 -0.10 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.41 7.83 -51.93 -0.41 0.00 16 30 H 0.08 0.43 8.04 -51.93 -0.42 0.01 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.81 6.77 -51.93 -0.35 0.46 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.41 5.83 7.94 -40.82 -0.32 5.51 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.07 0.72 8.03 -51.93 -0.42 0.31 16 43 H 0.10 1.21 6.16 -51.93 -0.32 0.89 16 LS Contribution 351.59 15.07 5.30 5.30 Total: -1.00 -31.53 351.59 -7.87 -39.40 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -7.27 Total: 0.07 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -0.93 Total: -0.09 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: -0.10 Total: -44.34 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: 0.16 Total: -16.87 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.53 -7.87 -39.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322763779.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.657 kcal (2) G-P(sol) polarization free energy of solvation -31.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds