Wall clock time and date at job start Tue Mar 31 2020 06:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.99482 * 2 1 4 4 C 1.54337 * 109.99063 * 238.96507 * 2 1 3 5 5 C 1.55159 * 103.01770 * 218.66399 * 4 2 1 6 6 H 1.08994 * 111.03793 * 277.21655 * 5 4 2 7 7 C 1.53004 * 111.00011 * 153.38197 * 5 4 2 8 8 C 1.54911 * 101.58402 * 35.30769 * 5 4 2 9 9 N 1.47026 * 109.88459 * 121.09780 * 2 1 3 10 10 C 1.34777 * 125.64403 * 298.39702 * 9 2 1 11 11 O 1.21346 * 120.00289 * 359.70951 * 10 9 2 12 12 C 1.49452 * 119.99674 * 179.71538 * 10 9 2 13 13 O 1.21353 * 119.99675 * 359.97438 * 12 10 9 14 14 N 1.34769 * 120.00169 * 179.97438 * 12 10 9 15 15 C 1.46500 * 120.00241 * 180.02562 * 14 12 10 16 16 C 1.53006 * 109.46998 * 180.02562 * 15 14 12 17 17 C 1.52999 * 109.46626 * 179.97438 * 16 15 14 18 18 C 1.50706 * 109.46957 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99816 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00340 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00347 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99775 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.46867 * 90.00546 * 22 20 18 24 24 H 1.48501 * 109.47216 * 210.00404 * 22 20 18 25 25 H 1.48499 * 109.47135 * 330.00745 * 22 20 18 26 26 H 1.09002 * 109.47281 * 300.35408 * 1 2 3 27 27 H 1.08994 * 109.47375 * 60.35655 * 1 2 3 28 28 H 1.09005 * 109.46976 * 180.35775 * 1 2 3 29 29 H 1.08994 * 110.84898 * 100.19381 * 4 2 1 30 30 H 1.09004 * 110.66567 * 337.04335 * 4 2 1 31 31 H 1.09003 * 109.47001 * 306.34700 * 7 5 4 32 32 H 1.09004 * 109.47102 * 66.34964 * 7 5 4 33 33 H 1.09000 * 109.46792 * 186.35368 * 7 5 4 34 34 H 1.08990 * 110.36458 * 204.14812 * 8 5 4 35 35 H 1.09000 * 110.36243 * 81.82632 * 8 5 4 36 36 H 0.97010 * 119.99849 * 0.02562 * 14 12 10 37 37 H 1.09000 * 109.47175 * 60.00333 * 15 14 12 38 38 H 1.09001 * 109.47297 * 299.99840 * 15 14 12 39 39 H 1.08993 * 109.46955 * 300.00226 * 16 15 14 40 40 H 1.09000 * 109.47050 * 60.00054 * 16 15 14 41 41 H 1.08993 * 109.47839 * 299.99931 * 17 16 15 42 42 H 1.09000 * 109.47160 * 60.00369 * 17 16 15 43 43 H 0.96991 * 119.99882 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0576 -0.7478 -1.2428 5 6 3.2864 -1.5183 -0.6915 6 1 4.1673 -0.8774 -0.6580 7 6 3.5591 -2.7777 -1.5165 8 6 2.8100 -1.8825 0.7368 9 7 2.0301 -0.7141 1.1839 10 6 1.8074 -0.3621 2.4657 11 8 1.1472 0.6243 2.7181 12 6 2.3737 -1.1866 3.5762 13 8 3.0336 -2.1732 3.3236 14 7 2.1515 -0.8343 4.8579 15 6 2.7071 -1.6422 5.9464 16 6 2.3094 -1.0291 7.2907 17 6 2.8892 -1.8732 8.4275 18 6 2.4970 -1.2698 9.7516 19 1 1.8942 -0.3741 9.7795 20 6 2.9078 -1.8612 10.9275 21 7 2.5651 -1.3349 12.0830 22 14 3.9498 -3.4108 10.8792 23 1 5.3875 -3.0399 10.8539 24 1 3.6717 -4.2321 12.0848 25 1 3.6186 -4.1923 9.6607 26 1 -0.3634 0.5193 0.8868 27 1 -0.3634 0.5082 -0.8931 28 1 -0.3633 -1.0277 0.0064 29 1 2.3596 -0.0449 -2.0192 30 1 1.3066 -1.4405 -1.6225 31 1 2.6522 -3.3799 -1.5708 32 1 3.8673 -2.4933 -2.5226 33 1 4.3522 -3.3570 -1.0436 34 1 3.6655 -2.0412 1.3931 35 1 2.1802 -2.7718 0.7113 36 1 1.6236 -0.0458 5.0597 37 1 3.7937 -1.6646 5.8642 38 1 2.3167 -2.6578 5.8810 39 1 2.6994 -0.0135 7.3564 40 1 1.2228 -1.0071 7.3728 41 1 2.4988 -2.8887 8.3617 42 1 3.9759 -1.8957 8.3457 43 1 2.8538 -1.7511 12.9101 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322763780.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:46 Heat of formation + Delta-G solvation = -85.744218 kcal Electronic energy + Delta-G solvation = -22019.852170 eV Core-core repulsion = 18678.466812 eV Total energy + Delta-G solvation = -3341.385358 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.97293 -39.18528 -37.85782 -35.74221 -33.52249 -33.19602 -32.05311 -31.47767 -27.75467 -27.39940 -26.15982 -24.83179 -22.77083 -21.23254 -20.88635 -20.56089 -19.42718 -17.73267 -17.38683 -16.72434 -16.38883 -15.86156 -15.30028 -14.87327 -14.51836 -14.35585 -14.17525 -13.93184 -13.68476 -13.41423 -13.17308 -13.00523 -12.72605 -12.47503 -12.30257 -12.08663 -11.97289 -11.93870 -11.63217 -11.13536 -11.11684 -11.03164 -10.92408 -10.91640 -10.14904 -9.96517 -9.77265 -9.40279 -9.24111 -9.12206 -8.95104 -8.56523 -6.06834 -4.05847 1.40342 2.20199 3.18629 3.30183 3.37784 3.41303 3.43161 4.06411 4.15076 4.39487 4.43283 4.46445 4.77687 4.89863 4.95400 5.09696 5.19374 5.26523 5.26846 5.39094 5.44004 5.44169 5.48323 5.56754 5.63992 5.67801 5.77446 5.85509 5.92954 5.94512 6.03948 6.19433 6.38797 6.56025 6.73816 6.98831 7.19614 7.26769 7.33195 7.67900 7.74550 8.01396 8.49647 8.97315 9.54957 11.06434 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033300 B = 0.002839 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.635717 B = 9860.660855 C =10565.031006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.132 3.868 3 H 0.080 0.920 4 C -0.125 4.125 5 C -0.110 4.110 6 H 0.085 0.915 7 C -0.140 4.140 8 C 0.101 3.899 9 N -0.590 5.590 10 C 0.522 3.478 11 O -0.520 6.520 12 C 0.503 3.497 13 O -0.523 6.523 14 N -0.692 5.692 15 C 0.112 3.888 16 C -0.115 4.115 17 C -0.010 4.010 18 C -0.523 4.523 19 H 0.072 0.928 20 C 0.066 3.934 21 N -0.902 5.902 22 Si 0.880 3.120 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.265 1.265 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.103 0.897 35 H 0.073 0.927 36 H 0.412 0.588 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.019 0.981 42 H 0.015 0.985 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.264 -0.341 -29.856 29.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.029 3.971 3 H 0.098 0.902 4 C -0.163 4.163 5 C -0.129 4.129 6 H 0.104 0.896 7 C -0.198 4.198 8 C -0.021 4.021 9 N -0.325 5.325 10 C 0.305 3.695 11 O -0.396 6.396 12 C 0.284 3.716 13 O -0.400 6.400 14 N -0.343 5.343 15 C -0.010 4.010 16 C -0.153 4.153 17 C -0.048 4.048 18 C -0.561 4.561 19 H 0.091 0.909 20 C -0.135 4.135 21 N -0.541 5.541 22 Si 0.708 3.292 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.189 1.189 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.121 0.879 35 H 0.091 0.909 36 H 0.248 0.752 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.038 0.962 42 H 0.033 0.967 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.149 -0.521 -29.584 29.588 hybrid contribution 0.275 -0.408 0.288 0.571 sum 0.126 -0.929 -29.295 29.310 Atomic orbital electron populations 1.22153 0.94319 1.02523 1.03227 1.21695 0.94951 0.96542 0.83913 0.90203 1.22844 0.97697 0.99543 0.96175 1.22438 0.98105 0.97834 0.94524 0.89634 1.21684 1.02182 0.96396 0.99523 1.22750 0.96734 0.87606 0.95057 1.48351 1.51387 1.28488 1.04239 1.19982 0.81365 0.85363 0.82816 1.90750 1.38932 1.26700 1.83215 1.19954 0.81861 0.85525 0.84309 1.90702 1.39112 1.26676 1.83554 1.46014 1.52874 1.30632 1.04819 1.21839 0.98816 0.94813 0.85509 1.21742 1.01437 1.00386 0.91757 1.19500 0.95902 0.95617 0.93787 1.21094 1.33709 1.12576 0.88693 0.90939 1.25032 0.95787 0.97251 0.95420 1.69910 1.46216 1.40553 0.97443 0.86770 0.80942 0.83761 0.77777 1.20244 1.21370 1.18908 0.91000 0.91410 0.92362 0.89862 0.90138 0.92261 0.92122 0.91952 0.87919 0.90912 0.75170 0.91143 0.91142 0.91823 0.91802 0.96249 0.96683 0.92675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.11 37.16 0.34 -1.06 16 2 C 0.13 1.15 3.46 -66.94 -0.23 0.92 16 3 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 4 C -0.12 -0.74 5.95 -24.89 -0.15 -0.89 16 5 C -0.11 -0.73 3.64 -88.47 -0.32 -1.05 16 6 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 7 C -0.14 -0.73 9.29 37.16 0.35 -0.39 16 8 C 0.10 0.96 5.53 -2.53 -0.01 0.95 16 9 N -0.59 -6.60 3.06 -163.51 -0.50 -7.10 16 10 C 0.52 7.19 7.70 -11.58 -0.09 7.10 16 11 O -0.52 -8.03 15.52 5.50 0.09 -7.94 16 12 C 0.50 7.47 7.86 -11.59 -0.09 7.38 16 13 O -0.52 -8.43 13.78 5.49 0.08 -8.35 16 14 N -0.69 -10.15 5.55 -60.73 -0.34 -10.49 16 15 C 0.11 1.82 5.67 -4.04 -0.02 1.79 16 16 C -0.12 -2.15 5.27 -26.73 -0.14 -2.29 16 17 C -0.01 -0.23 4.04 -27.88 -0.11 -0.35 16 18 C -0.52 -14.71 9.66 -34.44 -0.33 -15.05 16 19 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 20 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 21 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 22 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 26 H 0.07 0.78 6.89 -51.93 -0.36 0.43 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.43 7.72 -51.93 -0.40 0.03 16 31 H 0.06 0.30 8.11 -51.93 -0.42 -0.12 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.10 1.15 6.16 -51.93 -0.32 0.83 16 35 H 0.07 0.69 8.04 -51.93 -0.42 0.27 16 36 H 0.41 5.62 7.95 -40.82 -0.32 5.30 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 42 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 43 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 348.24 15.07 5.25 5.25 Total: -1.00 -32.09 348.24 -7.49 -39.58 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -7.24 Total: 0.23 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -0.92 Total: -1.10 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: -0.06 Total: -44.58 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: 0.16 Total: -16.29 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.09 -7.49 -39.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322763780.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.163 kcal (2) G-P(sol) polarization free energy of solvation -32.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds