Wall clock time and date at job start Tue Mar 31 2020 06:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.05604 * 2 1 4 4 C 1.54264 * 110.03633 * 238.57917 * 2 1 3 5 5 C 1.54890 * 104.20022 * 217.10894 * 4 2 1 6 6 C 1.54890 * 102.74753 * 37.94159 * 5 4 2 7 7 C 1.53880 * 110.02865 * 121.41529 * 2 1 3 8 8 H 1.08999 * 110.07447 * 238.59262 * 7 2 1 9 9 C 1.52997 * 110.03349 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47473 * 183.62246 * 9 7 2 11 11 C 1.34777 * 120.00376 * 179.97438 * 10 9 7 12 12 O 1.21352 * 119.99754 * 0.02562 * 11 10 9 13 13 C 1.49441 * 120.00194 * 179.97438 * 11 10 9 14 14 O 1.21352 * 120.00052 * 0.02562 * 13 11 10 15 15 N 1.34777 * 120.00194 * 179.97438 * 13 11 10 16 16 C 1.46500 * 120.00376 * 180.02562 * 15 13 11 17 17 C 1.52997 * 109.47473 * 180.02562 * 16 15 13 18 18 C 1.50701 * 109.47212 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00129 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99861 * 179.97438 * 18 17 16 21 21 N 1.31510 * 119.99913 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99734 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47294 * 60.00559 * 22 20 18 24 24 H 1.48503 * 109.46954 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47431 * 300.00157 * 22 20 18 26 26 H 1.08996 * 109.47709 * 298.58454 * 1 2 3 27 27 H 1.09001 * 109.46694 * 58.58886 * 1 2 3 28 28 H 1.09000 * 109.46853 * 178.57917 * 1 2 3 29 29 H 1.08996 * 110.48460 * 98.42936 * 4 2 1 30 30 H 1.09000 * 110.60207 * 335.84369 * 4 2 1 31 31 H 1.09004 * 110.75728 * 279.63494 * 5 4 2 32 32 H 1.08993 * 110.91802 * 156.33070 * 5 4 2 33 33 H 1.08999 * 110.48806 * 203.38183 * 6 5 4 34 34 H 1.09005 * 110.60087 * 80.78846 * 6 5 4 35 35 H 1.09002 * 109.47153 * 63.62003 * 9 7 2 36 36 H 1.09001 * 109.46832 * 303.62194 * 9 7 2 37 37 H 0.97004 * 119.99396 * 359.97438 * 10 9 7 38 38 H 0.97004 * 120.00228 * 0.02562 * 15 13 11 39 39 H 1.09002 * 109.47129 * 59.99747 * 16 15 13 40 40 H 1.08998 * 109.46845 * 300.00553 * 16 15 13 41 41 H 1.09002 * 109.47153 * 59.99757 * 17 16 15 42 42 H 1.09001 * 109.46832 * 299.99948 * 17 16 15 43 43 H 0.97002 * 119.99768 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0585 -0.7555 -1.2368 5 6 3.3137 -1.5008 -0.7190 6 6 2.8874 -1.9407 0.7037 7 6 2.0570 -0.7536 1.2338 8 1 2.6864 -0.0959 1.8333 9 6 0.8861 -1.2674 2.0738 10 7 1.3994 -1.9067 3.2879 11 6 0.5434 -2.4360 4.1844 12 8 -0.6526 -2.3834 3.9856 13 6 1.0671 -3.0886 5.4226 14 8 2.2631 -3.1415 5.6211 15 7 0.2111 -3.6174 6.3193 16 6 0.7245 -4.2567 7.5334 17 6 -0.4465 -4.7699 8.3737 18 6 0.0816 -5.4281 9.6223 19 1 1.1460 -5.4752 9.7991 20 6 -0.7941 -5.9692 10.5396 21 7 -2.0903 -5.9114 10.3246 22 14 -0.1395 -6.7843 12.0876 23 1 0.6401 -5.7961 12.8757 24 1 -1.2761 -7.2826 12.9032 25 1 0.7380 -7.9228 11.7144 26 1 -0.3634 0.4917 0.9023 27 1 -0.3633 0.5356 -0.8771 28 1 -0.3633 -1.0274 -0.0255 29 1 2.3298 -0.0537 -2.0253 30 1 1.3153 -1.4660 -1.5988 31 1 4.1711 -0.8291 -0.6748 32 1 3.5357 -2.3678 -1.3411 33 1 3.7636 -2.1037 1.3312 34 1 2.2776 -2.8432 0.6595 35 1 0.3145 -1.9929 1.4951 36 1 0.2414 -0.4322 2.3478 37 1 2.3554 -1.9490 3.4466 38 1 -0.7449 -3.5748 6.1608 39 1 1.2968 -3.5314 8.1117 40 1 1.3685 -5.0923 7.2595 41 1 -1.0185 -5.4954 7.7952 42 1 -1.0908 -3.9345 8.6476 43 1 -2.7063 -6.2924 10.9698 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323245783.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:24 Heat of formation + Delta-G solvation = -103.314231 kcal Electronic energy + Delta-G solvation = -21658.814999 eV Core-core repulsion = 18316.667748 eV Total energy + Delta-G solvation = -3342.147251 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.52085 -39.37946 -38.08107 -35.37848 -34.49454 -32.83955 -31.83931 -30.14039 -29.76337 -26.25369 -25.39193 -24.76332 -22.96491 -21.18234 -20.97211 -20.24372 -19.28485 -17.95617 -17.05925 -16.56193 -16.11835 -15.81573 -15.37346 -15.02521 -14.74670 -14.57485 -14.39768 -14.04234 -13.80238 -13.49242 -13.02450 -12.81811 -12.67332 -12.39319 -12.31358 -11.53805 -11.38845 -11.23442 -11.21825 -11.11992 -11.04359 -11.02292 -10.95277 -10.71956 -10.68190 -10.38261 -9.78744 -9.43963 -9.27166 -9.18411 -8.68144 -8.40999 -6.09634 -4.13396 1.64765 2.58268 3.30886 3.35049 3.37796 3.46165 3.89181 4.13551 4.20430 4.26428 4.41053 4.78424 4.80915 4.93389 4.95532 5.07319 5.10363 5.17199 5.21288 5.27092 5.42589 5.46604 5.54171 5.60510 5.62252 5.74943 5.82333 5.90096 5.99735 6.06541 6.18588 6.20116 6.24665 6.60940 6.70533 7.09401 7.47709 7.58533 7.69501 7.87614 7.95948 8.22381 8.35769 8.91993 9.51376 11.01824 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.046988 B = 0.002455 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.750046 B =11401.702892 C =11802.032466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.087 4.087 3 H 0.075 0.925 4 C -0.121 4.121 5 C -0.125 4.125 6 C -0.124 4.124 7 C -0.103 4.103 8 H 0.081 0.919 9 C 0.121 3.879 10 N -0.706 5.706 11 C 0.507 3.493 12 O -0.522 6.522 13 C 0.497 3.503 14 O -0.535 6.535 15 N -0.686 5.686 16 C 0.119 3.881 17 C 0.011 3.989 18 C -0.524 4.524 19 H 0.060 0.940 20 C 0.059 3.941 21 N -0.892 5.892 22 Si 0.899 3.101 23 H -0.275 1.275 24 H -0.287 1.287 25 H -0.276 1.276 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.411 0.589 38 H 0.410 0.590 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.025 0.975 42 H 0.025 0.975 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.796 11.726 -22.970 26.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.106 4.106 3 H 0.093 0.907 4 C -0.158 4.158 5 C -0.163 4.163 6 C -0.162 4.162 7 C -0.122 4.122 8 H 0.099 0.901 9 C -0.001 4.001 10 N -0.360 5.360 11 C 0.287 3.713 12 O -0.397 6.397 13 C 0.276 3.724 14 O -0.413 6.413 15 N -0.337 5.337 16 C -0.003 4.003 17 C -0.026 4.026 18 C -0.563 4.563 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.531 5.531 22 Si 0.726 3.274 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.201 1.201 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.247 0.753 38 H 0.246 0.754 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.043 0.957 42 H 0.043 0.957 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.585 11.663 -22.864 26.764 hybrid contribution 0.238 -0.436 0.889 1.018 sum 7.823 11.227 -21.975 25.887 Atomic orbital electron populations 1.22038 0.94797 1.02408 1.01995 1.21697 0.95981 0.99222 0.93659 0.90664 1.22466 0.97428 0.98985 0.96971 1.22475 0.97680 0.99948 0.96151 1.22504 0.99622 0.97655 0.96389 1.22081 0.96191 0.97511 0.96381 0.90077 1.21814 0.96236 0.97605 0.84486 1.45817 1.11043 1.57910 1.21187 1.20440 0.86575 0.79505 0.84733 1.90754 1.15162 1.56913 1.76866 1.20006 0.86961 0.80818 0.84603 1.90724 1.15046 1.58363 1.77144 1.46233 1.10863 1.55223 1.21386 1.21929 0.99514 0.96123 0.82729 1.19352 0.92271 0.96770 0.94238 1.20977 0.93301 1.37609 1.04383 0.92219 1.25004 0.94823 0.95995 0.98463 1.69949 1.01509 1.45306 1.36317 0.86551 0.78350 0.79796 0.82697 1.20098 1.21234 1.20102 0.92024 0.92638 0.91992 0.91713 0.91350 0.91494 0.91503 0.91306 0.91106 0.90717 0.90665 0.75272 0.75393 0.91885 0.91889 0.95667 0.95670 0.92711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.00 7.89 37.16 0.29 -0.71 16 2 C -0.09 -0.53 3.50 -89.50 -0.31 -0.85 16 3 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 4 C -0.12 -0.70 6.36 -25.07 -0.16 -0.86 16 5 C -0.13 -0.75 6.91 -24.74 -0.17 -0.92 16 6 C -0.12 -0.86 6.01 -25.07 -0.15 -1.01 16 7 C -0.10 -0.72 2.98 -89.50 -0.27 -0.99 16 8 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 9 C 0.12 1.13 3.77 -4.04 -0.02 1.11 16 10 N -0.71 -8.13 5.38 -60.73 -0.33 -8.46 16 11 C 0.51 7.67 7.89 -11.59 -0.09 7.57 16 12 O -0.52 -8.92 16.48 5.49 0.09 -8.82 16 13 C 0.50 8.64 7.89 -11.59 -0.09 8.55 16 14 O -0.53 -10.17 16.48 5.49 0.09 -10.08 16 15 N -0.69 -12.65 5.55 -60.73 -0.34 -12.99 16 16 C 0.12 2.50 5.61 -4.04 -0.02 2.48 16 17 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 18 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 19 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 21 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16 22 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H 0.06 0.42 6.65 -51.93 -0.35 0.07 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.43 6.82 -51.93 -0.35 0.08 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.41 7.84 -51.93 -0.41 0.00 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.55 7.78 -51.93 -0.40 0.15 16 35 H 0.07 0.74 6.86 -51.93 -0.36 0.38 16 36 H 0.08 0.73 6.51 -51.93 -0.34 0.39 16 37 H 0.41 4.31 7.78 -40.82 -0.32 4.00 16 38 H 0.41 7.23 7.94 -40.82 -0.32 6.91 16 39 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 350.28 15.07 5.28 5.28 Total: -1.00 -30.90 350.28 -8.07 -38.97 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -7.04 Total: 3.95 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -1.54 Total: 1.31 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: 0.07 Total: -46.91 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: 0.18 Total: -18.90 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.90 -8.07 -38.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323245783.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.346 kcal (2) G-P(sol) polarization free energy of solvation -30.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds