Wall clock time and date at job start Tue Mar 31 2020 06:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.05604 * 2 1 4 4 C 1.54264 * 110.03633 * 238.57917 * 2 1 3 5 5 C 1.54890 * 104.20022 * 217.10894 * 4 2 1 6 6 C 1.54890 * 102.74753 * 37.94159 * 5 4 2 7 7 C 1.53880 * 110.02865 * 121.41529 * 2 1 3 8 8 H 1.08999 * 110.07447 * 238.59262 * 7 2 1 9 9 C 1.52997 * 110.03349 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47473 * 183.62246 * 9 7 2 11 11 C 1.34777 * 120.00376 * 179.97438 * 10 9 7 12 12 O 1.21352 * 119.99754 * 0.02562 * 11 10 9 13 13 C 1.49441 * 120.00194 * 179.97438 * 11 10 9 14 14 O 1.21352 * 120.00052 * 0.02562 * 13 11 10 15 15 N 1.34777 * 120.00194 * 179.97438 * 13 11 10 16 16 C 1.46500 * 120.00376 * 180.02562 * 15 13 11 17 17 C 1.52997 * 109.47473 * 180.02562 * 16 15 13 18 18 C 1.50701 * 109.47212 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00129 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99861 * 179.97438 * 18 17 16 21 21 N 1.31510 * 119.99913 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99734 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47294 * 60.00559 * 22 20 18 24 24 H 1.48503 * 109.46954 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47431 * 300.00157 * 22 20 18 26 26 H 1.08996 * 109.47709 * 298.58454 * 1 2 3 27 27 H 1.09001 * 109.46694 * 58.58886 * 1 2 3 28 28 H 1.09000 * 109.46853 * 178.57917 * 1 2 3 29 29 H 1.08996 * 110.48460 * 98.42936 * 4 2 1 30 30 H 1.09000 * 110.60207 * 335.84369 * 4 2 1 31 31 H 1.09004 * 110.75728 * 279.63494 * 5 4 2 32 32 H 1.08993 * 110.91802 * 156.33070 * 5 4 2 33 33 H 1.08999 * 110.48806 * 203.38183 * 6 5 4 34 34 H 1.09005 * 110.60087 * 80.78846 * 6 5 4 35 35 H 1.09002 * 109.47153 * 63.62003 * 9 7 2 36 36 H 1.09001 * 109.46832 * 303.62194 * 9 7 2 37 37 H 0.97004 * 119.99396 * 359.97438 * 10 9 7 38 38 H 0.97004 * 120.00228 * 0.02562 * 15 13 11 39 39 H 1.09002 * 109.47129 * 59.99747 * 16 15 13 40 40 H 1.08998 * 109.46845 * 300.00553 * 16 15 13 41 41 H 1.09002 * 109.47153 * 59.99757 * 17 16 15 42 42 H 1.09001 * 109.46832 * 299.99948 * 17 16 15 43 43 H 0.97002 * 119.99768 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0585 -0.7555 -1.2368 5 6 3.3137 -1.5008 -0.7190 6 6 2.8874 -1.9407 0.7037 7 6 2.0570 -0.7536 1.2338 8 1 2.6864 -0.0959 1.8333 9 6 0.8861 -1.2674 2.0738 10 7 1.3994 -1.9067 3.2879 11 6 0.5434 -2.4360 4.1844 12 8 -0.6526 -2.3834 3.9856 13 6 1.0671 -3.0886 5.4226 14 8 2.2631 -3.1415 5.6211 15 7 0.2111 -3.6174 6.3193 16 6 0.7245 -4.2567 7.5334 17 6 -0.4465 -4.7699 8.3737 18 6 0.0816 -5.4281 9.6223 19 1 1.1460 -5.4752 9.7991 20 6 -0.7941 -5.9692 10.5396 21 7 -2.0903 -5.9114 10.3246 22 14 -0.1395 -6.7843 12.0876 23 1 0.6401 -5.7961 12.8757 24 1 -1.2761 -7.2826 12.9032 25 1 0.7380 -7.9228 11.7144 26 1 -0.3634 0.4917 0.9023 27 1 -0.3633 0.5356 -0.8771 28 1 -0.3633 -1.0274 -0.0255 29 1 2.3298 -0.0537 -2.0253 30 1 1.3153 -1.4660 -1.5988 31 1 4.1711 -0.8291 -0.6748 32 1 3.5357 -2.3678 -1.3411 33 1 3.7636 -2.1037 1.3312 34 1 2.2776 -2.8432 0.6595 35 1 0.3145 -1.9929 1.4951 36 1 0.2414 -0.4322 2.3478 37 1 2.3554 -1.9490 3.4466 38 1 -0.7449 -3.5748 6.1608 39 1 1.2968 -3.5314 8.1117 40 1 1.3685 -5.0923 7.2595 41 1 -1.0185 -5.4954 7.7952 42 1 -1.0908 -3.9345 8.6476 43 1 -2.7063 -6.2924 10.9698 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323245783.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:24 Heat of formation + Delta-G solvation = -124.018780 kcal Electronic energy + Delta-G solvation = -21659.712815 eV Core-core repulsion = 18316.667748 eV Total energy + Delta-G solvation = -3343.045067 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.75011 -40.21820 -39.29476 -36.91109 -35.70931 -34.77965 -32.37487 -31.69998 -30.82313 -27.62308 -26.34824 -25.75828 -24.29293 -22.80572 -21.72496 -21.40147 -20.23945 -19.00589 -18.58112 -17.97343 -17.31187 -17.05275 -16.53411 -16.35419 -16.13737 -15.85984 -15.47631 -14.96619 -14.85927 -14.54435 -14.34131 -14.30186 -13.51960 -13.39077 -13.26755 -13.00209 -12.92776 -12.84355 -12.54693 -12.27432 -11.90430 -11.80810 -11.69393 -11.64396 -11.56969 -11.46564 -11.43900 -11.27259 -10.68935 -10.61260 -10.29520 -10.18802 -8.23528 -6.34973 0.32020 1.33002 1.43718 1.45628 1.53831 2.12009 2.39997 2.69647 3.11295 3.42473 3.57454 3.64668 3.71713 4.24994 4.34469 4.38303 4.42185 4.44598 4.48139 4.51763 4.66082 4.70821 4.80350 4.81923 4.90586 4.97150 5.04938 5.07486 5.12877 5.15561 5.27593 5.36852 5.38685 5.41941 5.48316 5.54312 5.56686 5.75102 5.93428 6.12539 6.36008 6.70778 6.79422 6.92771 7.34545 8.88336 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.046988 B = 0.002455 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.750046 B =11401.702892 C =11802.032466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.084 4.084 3 H 0.085 0.915 4 C -0.120 4.120 5 C -0.123 4.123 6 C -0.126 4.126 7 C -0.096 4.096 8 H 0.089 0.911 9 C 0.120 3.880 10 N -0.686 5.686 11 C 0.512 3.488 12 O -0.544 6.544 13 C 0.499 3.501 14 O -0.549 6.549 15 N -0.689 5.689 16 C 0.138 3.862 17 C 0.019 3.981 18 C -0.546 4.546 19 H 0.065 0.935 20 C 0.004 3.996 21 N -0.928 5.928 22 Si 0.968 3.032 23 H -0.267 1.267 24 H -0.283 1.283 25 H -0.267 1.267 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.418 0.582 38 H 0.414 0.586 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.007 0.993 42 H 0.007 0.993 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.181 12.301 -23.645 28.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.103 4.103 3 H 0.103 0.897 4 C -0.157 4.157 5 C -0.160 4.160 6 C -0.164 4.164 7 C -0.115 4.115 8 H 0.107 0.893 9 C -0.002 4.002 10 N -0.339 5.339 11 C 0.292 3.708 12 O -0.421 6.421 13 C 0.280 3.720 14 O -0.428 6.428 15 N -0.340 5.340 16 C 0.015 3.985 17 C -0.019 4.019 18 C -0.584 4.584 19 H 0.083 0.917 20 C -0.195 4.195 21 N -0.568 5.568 22 Si 0.793 3.207 23 H -0.191 1.191 24 H -0.209 1.209 25 H -0.192 1.192 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.256 0.744 38 H 0.250 0.750 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.026 0.974 42 H 0.026 0.974 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.005 12.259 -23.578 28.059 hybrid contribution -0.181 -0.577 1.017 1.183 sum 8.824 11.682 -22.561 26.895 Atomic orbital electron populations 1.22031 0.95122 1.01957 1.02162 1.21702 0.95660 0.99635 0.93271 0.89685 1.22466 0.97211 0.99055 0.97010 1.22472 0.97971 1.00204 0.95381 1.22514 0.99489 0.97144 0.97257 1.22071 0.95290 0.97716 0.96453 0.89271 1.22004 0.97306 0.97288 0.83558 1.45823 1.11027 1.56208 1.20827 1.19960 0.86499 0.79870 0.84436 1.90755 1.15949 1.58212 1.77223 1.20369 0.86518 0.80138 0.84964 1.90713 1.15647 1.58815 1.77608 1.46077 1.11283 1.55597 1.21041 1.21479 0.97645 0.96090 0.83272 1.19173 0.93071 0.95546 0.94095 1.21426 0.93776 1.37793 1.05427 0.91661 1.25934 0.95017 0.96579 1.01928 1.70072 1.02806 1.46291 1.37617 0.85448 0.77853 0.78959 0.78478 1.19148 1.20865 1.19162 0.92511 0.91822 0.92781 0.90709 0.91729 0.90791 0.91296 0.91099 0.92172 0.91073 0.90652 0.74431 0.74955 0.91993 0.92013 0.97449 0.97443 0.92555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 7.89 71.98 0.57 -1.24 16 2 C -0.08 -0.87 3.50 -10.07 -0.04 -0.90 16 3 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 4 C -0.12 -1.15 6.36 31.67 0.20 -0.95 16 5 C -0.12 -1.23 6.91 31.89 0.22 -1.01 16 6 C -0.13 -1.55 6.01 31.67 0.19 -1.36 16 7 C -0.10 -1.18 2.98 -10.07 -0.03 -1.21 16 8 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 9 C 0.12 2.10 3.77 86.38 0.33 2.42 16 10 N -0.69 -14.98 5.38 -464.42 -2.50 -17.48 16 11 C 0.51 15.15 7.89 87.27 0.69 15.83 16 12 O -0.54 -18.39 16.48 -3.25 -0.05 -18.44 16 13 C 0.50 17.12 7.89 87.27 0.69 17.81 16 14 O -0.55 -20.39 16.48 -3.25 -0.05 -20.45 16 15 N -0.69 -25.46 5.55 -464.42 -2.58 -28.04 16 16 C 0.14 5.83 5.61 86.38 0.48 6.31 16 17 C 0.02 0.95 5.09 29.85 0.15 1.10 16 18 C -0.55 -30.25 9.11 25.60 0.23 -30.02 16 19 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 20 C 0.00 0.23 5.46 84.66 0.46 0.70 16 21 N -0.93 -55.10 13.29 21.45 0.28 -54.82 16 22 Si 0.97 43.44 29.54 68.60 2.03 45.46 16 23 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 24 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 25 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 26 H 0.06 0.71 6.65 -2.39 -0.02 0.69 16 27 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.05 0.71 6.82 -2.39 -0.02 0.69 16 29 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 0.68 7.84 -2.39 -0.02 0.66 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.06 0.87 7.78 -2.38 -0.02 0.86 16 35 H 0.07 1.34 6.86 -2.39 -0.02 1.33 16 36 H 0.08 1.37 6.51 -2.39 -0.02 1.35 16 37 H 0.42 8.12 7.78 -92.71 -0.72 7.40 16 38 H 0.41 14.80 7.94 -92.71 -0.74 14.06 16 39 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 40 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 41 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 42 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 43 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -64.93 350.28 0.83 -64.10 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: -0.45 Total: 22.18 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: 4.15 Total: 7.48 kcal Atomic # 7 Polarization: -95.54 SS G_CDS: -4.79 Total: -100.33 kcal Atomic # 8 Polarization: -38.78 SS G_CDS: -0.11 Total: -38.89 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Total: -64.93 0.83 -64.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323245783.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.922 kcal (2) G-P(sol) polarization free energy of solvation -64.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds