Wall clock time and date at job start Tue Mar 31 2020 06:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.87795 * 2 1 4 4 C 1.54324 * 109.88124 * 121.17910 * 2 1 3 5 5 C 1.55165 * 102.94042 * 141.61158 * 4 2 1 6 6 C 1.55128 * 101.48395 * 324.32708 * 5 4 2 7 7 N 1.47021 * 109.88055 * 238.98449 * 2 1 3 8 8 C 1.34777 * 125.64918 * 61.61038 * 7 2 1 9 9 O 1.21343 * 120.00084 * 359.97438 * 8 7 2 10 10 C 1.49454 * 120.00164 * 179.97438 * 8 7 2 11 11 O 1.21353 * 119.99759 * 359.97438 * 10 8 7 12 12 N 1.34773 * 120.00135 * 180.27489 * 10 8 7 13 13 C 1.46500 * 120.00432 * 179.72278 * 12 10 8 14 14 C 1.52991 * 109.47288 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.47201 * 299.99711 * 14 13 12 16 16 C 1.52995 * 109.47457 * 60.00162 * 14 13 12 17 17 C 1.50707 * 109.46959 * 180.02562 * 14 13 12 18 18 H 1.07992 * 119.99760 * 359.97438 * 17 14 13 19 19 C 1.37880 * 119.99951 * 179.97438 * 17 14 13 20 20 N 1.31514 * 119.99843 * 0.02562 * 19 17 14 21 21 Si 1.86801 * 119.99948 * 179.97438 * 19 17 14 22 22 H 1.48496 * 109.46852 * 0.02562 * 21 19 17 23 23 H 1.48493 * 109.46892 * 120.00472 * 21 19 17 24 24 H 1.48503 * 109.46797 * 240.00078 * 21 19 17 25 25 H 1.09001 * 109.47016 * 179.56279 * 1 2 3 26 26 H 1.08994 * 109.47226 * 299.55708 * 1 2 3 27 27 H 1.09002 * 109.47154 * 59.56083 * 1 2 3 28 28 H 1.08996 * 110.71730 * 259.96873 * 4 2 1 29 29 H 1.08998 * 110.72519 * 23.24982 * 4 2 1 30 30 H 1.08999 * 111.00403 * 82.57069 * 5 4 2 31 31 H 1.09003 * 110.99816 * 206.38255 * 5 4 2 32 32 H 1.08997 * 110.50187 * 278.45622 * 6 5 4 33 33 H 1.09004 * 110.33906 * 156.06413 * 6 5 4 34 34 H 0.97001 * 120.00114 * 359.71542 * 12 10 8 35 35 H 1.09000 * 109.46865 * 300.00301 * 13 12 10 36 36 H 1.09001 * 109.46879 * 59.99699 * 13 12 10 37 37 H 1.09003 * 109.47008 * 60.00269 * 15 14 13 38 38 H 1.09001 * 109.47349 * 180.02562 * 15 14 13 39 39 H 1.09001 * 109.47429 * 300.00297 * 15 14 13 40 40 H 1.08995 * 109.47164 * 59.99432 * 16 14 13 41 41 H 1.09001 * 109.47294 * 180.02562 * 16 14 13 42 42 H 1.09003 * 109.46864 * 299.99799 * 16 14 13 43 43 H 0.97000 * 120.00287 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0548 -0.7513 1.2416 5 6 3.2876 -1.5153 0.6901 6 6 2.8099 -1.8815 -0.7396 7 7 2.0299 -0.7124 -1.1849 8 6 1.8074 -0.3585 -2.4662 9 8 1.1425 0.6250 -2.7173 10 6 2.3794 -1.1775 -3.5778 11 8 3.0446 -2.1609 -3.3267 12 7 2.1614 -0.8205 -4.8590 13 6 2.7272 -1.6199 -5.9486 14 6 2.3326 -1.0028 -7.2919 15 6 0.8077 -0.9804 -7.4145 16 6 2.8720 0.4265 -7.3747 17 6 2.9141 -1.8255 -8.4127 18 1 3.5062 -2.7006 -8.1892 19 6 2.6902 -1.4609 -9.7234 20 7 1.9695 -0.3950 -9.9955 21 14 3.4115 -2.4802 -11.1127 22 1 4.1769 -3.6192 -10.5451 23 1 2.3138 -2.9990 -11.9676 24 1 4.3169 -1.6329 -11.9298 25 1 -0.3633 -1.0277 -0.0078 26 1 -0.3633 0.5069 0.8939 27 1 -0.3633 0.5206 -0.8860 28 1 2.3529 -0.0489 2.0199 29 1 1.3051 -1.4483 1.6162 30 1 4.1654 -0.8698 0.6591 31 1 3.4856 -2.4125 1.2766 32 1 2.1801 -2.7708 -0.7155 33 1 3.6655 -2.0393 -1.3962 34 1 1.6299 -0.0344 -5.0598 35 1 3.8135 -1.6363 -5.8610 36 1 2.3425 -2.6380 -5.8899 37 1 0.3867 -0.3856 -6.6038 38 1 0.5266 -0.5412 -8.3717 39 1 0.4234 -1.9987 -7.3555 40 1 3.9584 0.4104 -7.2873 41 1 2.5905 0.8662 -8.3315 42 1 2.4511 1.0212 -6.5640 43 1 1.8122 -0.1382 -10.9176 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325653793.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:48 Heat of formation + Delta-G solvation = -74.999326 kcal Electronic energy + Delta-G solvation = -22943.147637 eV Core-core repulsion = 19602.228212 eV Total energy + Delta-G solvation = -3340.919424 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.66861 -38.84244 -37.46255 -36.44164 -33.40392 -31.88777 -31.46102 -30.87831 -26.46352 -25.95397 -25.71791 -25.30136 -24.00745 -22.03753 -20.95644 -19.46955 -18.77451 -17.52264 -17.07450 -16.27915 -15.78782 -15.34088 -14.96298 -14.72747 -14.18534 -14.02288 -13.76954 -13.63213 -13.28000 -12.92195 -12.89404 -12.70673 -12.36631 -12.22455 -11.84865 -11.61444 -11.39864 -11.21785 -11.11100 -11.02199 -10.89544 -10.84861 -10.66892 -10.39792 -10.19800 -9.64967 -9.47137 -9.12828 -8.83696 -8.78593 -8.56404 -8.37010 -6.02647 -4.13420 1.70332 2.49138 3.26942 3.35620 3.39626 3.49821 3.76440 4.33217 4.35057 4.40644 4.63239 4.81468 5.01808 5.07936 5.18488 5.24044 5.34421 5.47521 5.54047 5.66150 5.81452 5.84285 5.93992 6.05269 6.12397 6.22961 6.24062 6.47625 6.65872 6.85101 6.85802 6.95150 7.00840 7.22030 7.33661 7.55508 7.63164 7.69876 8.00332 8.00472 8.13863 8.34027 8.43157 8.87098 9.52529 10.98785 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.038417 B = 0.003524 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.678411 B = 7943.887389 C = 8382.203225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.131 3.869 3 H 0.079 0.921 4 C -0.128 4.128 5 C -0.137 4.137 6 C 0.097 3.903 7 N -0.592 5.592 8 C 0.521 3.479 9 O -0.522 6.522 10 C 0.498 3.502 11 O -0.532 6.532 12 N -0.680 5.680 13 C 0.129 3.871 14 C 0.055 3.945 15 C -0.133 4.133 16 C -0.133 4.133 17 C -0.507 4.507 18 H 0.059 0.941 19 C 0.066 3.934 20 N -0.884 5.884 21 Si 0.894 3.106 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.104 0.896 34 H 0.410 0.590 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.008 0.992 38 H 0.087 0.913 39 H 0.027 0.973 40 H 0.027 0.973 41 H 0.087 0.913 42 H 0.008 0.992 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.494 0.045 20.005 20.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.028 3.972 3 H 0.097 0.903 4 C -0.166 4.166 5 C -0.175 4.175 6 C -0.025 4.025 7 N -0.327 5.327 8 C 0.305 3.695 9 O -0.397 6.397 10 C 0.278 3.722 11 O -0.410 6.410 12 N -0.332 5.332 13 C 0.007 3.993 14 C 0.055 3.945 15 C -0.191 4.191 16 C -0.191 4.191 17 C -0.545 4.545 18 H 0.077 0.923 19 C -0.135 4.135 20 N -0.523 5.523 21 Si 0.722 3.278 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.089 0.911 33 H 0.122 0.878 34 H 0.248 0.752 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.027 0.973 38 H 0.106 0.894 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.105 0.895 42 H 0.027 0.973 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.460 0.002 19.753 19.759 hybrid contribution 0.081 -0.176 -0.859 0.881 sum -0.379 -0.175 18.894 18.899 Atomic orbital electron populations 1.22157 0.94500 1.02463 1.03117 1.21671 0.94878 0.96539 0.84103 0.90330 1.22741 0.98012 0.99625 0.96255 1.22897 0.97862 1.01011 0.95730 1.22696 0.96851 0.87658 0.95329 1.48374 1.51651 1.28471 1.04253 1.20167 0.81220 0.85311 0.82847 1.90733 1.38781 1.26924 1.83301 1.19900 0.82299 0.85572 0.84453 1.90666 1.39642 1.27113 1.83622 1.46216 1.51568 1.30721 1.04697 1.21930 0.97495 0.94081 0.85780 1.18388 0.93388 0.93525 0.89242 1.21853 0.97040 0.98671 1.01526 1.21849 0.98230 0.97524 1.01479 1.20991 1.32432 1.11027 0.90068 0.92297 1.24889 0.94925 0.95070 0.98644 1.69819 1.38842 1.24610 1.18981 0.86500 0.78903 0.80296 0.82090 1.19751 1.21060 1.21052 0.92413 0.91569 0.90999 0.89975 0.90292 0.90521 0.89695 0.91072 0.87804 0.75223 0.92035 0.92041 0.97280 0.89443 0.95371 0.95362 0.89453 0.97278 0.92999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.10 37.16 0.34 -1.33 16 2 C 0.13 1.36 3.46 -66.95 -0.23 1.13 16 3 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 4 C -0.13 -0.92 6.47 -24.89 -0.16 -1.08 16 5 C -0.14 -1.05 7.10 -24.46 -0.17 -1.23 16 6 C 0.10 1.09 6.08 -2.41 -0.01 1.07 16 7 N -0.59 -7.84 3.06 -163.38 -0.50 -8.34 16 8 C 0.52 8.58 7.71 -11.58 -0.09 8.49 16 9 O -0.52 -9.47 15.51 5.50 0.09 -9.38 16 10 C 0.50 9.01 7.86 -11.59 -0.09 8.92 16 11 O -0.53 -10.13 13.77 5.49 0.08 -10.06 16 12 N -0.68 -12.93 4.95 -60.73 -0.30 -13.23 16 13 C 0.13 2.72 4.50 -4.05 -0.02 2.70 16 14 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 15 C -0.13 -3.07 8.08 37.16 0.30 -2.77 16 16 C -0.13 -3.07 8.08 37.15 0.30 -2.77 16 17 C -0.51 -13.19 8.01 -34.44 -0.28 -13.46 16 18 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 19 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 20 N -0.88 -23.66 9.35 55.43 0.52 -23.15 16 21 Si 0.89 20.63 29.54 -169.99 -5.02 15.60 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.91 6.88 -51.93 -0.36 0.56 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.51 7.85 -51.93 -0.41 0.10 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.10 1.35 6.14 -51.93 -0.32 1.03 16 34 H 0.41 7.73 5.63 -40.82 -0.23 7.50 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 37 H 0.01 0.17 6.86 -51.93 -0.36 -0.18 16 38 H 0.09 2.22 6.07 -51.93 -0.32 1.91 16 39 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.09 2.22 6.07 -51.93 -0.32 1.90 16 42 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 43 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 337.59 15.07 5.09 5.09 Total: -1.00 -28.30 337.59 -7.19 -35.49 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -6.85 Total: 5.45 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -0.29 Total: 2.52 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: -0.28 Total: -44.72 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: 0.16 Total: -19.44 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.30 -7.19 -35.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325653793.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.510 kcal (2) G-P(sol) polarization free energy of solvation -28.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds