Wall clock time and date at job start Tue Mar 31 2020 06:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 110.43733 * 2 1 4 4 C 1.54893 * 110.48591 * 237.31758 * 2 1 3 5 5 C 1.54890 * 102.74613 * 203.37757 * 4 2 1 6 6 C 1.54264 * 104.19730 * 37.94313 * 5 4 2 7 7 H 1.09004 * 110.06952 * 95.69645 * 6 5 4 8 8 C 1.53001 * 110.03315 * 217.10129 * 6 5 4 9 9 N 1.46498 * 109.47427 * 292.17037 * 8 6 5 10 10 C 1.34774 * 120.00210 * 179.97438 * 9 8 6 11 11 O 1.21348 * 119.99610 * 0.02562 * 10 9 8 12 12 C 1.49448 * 119.99767 * 179.97438 * 10 9 8 13 13 O 1.21341 * 120.00524 * 359.72844 * 12 10 9 14 14 N 1.34784 * 119.99762 * 179.97438 * 12 10 9 15 15 C 1.46499 * 119.99893 * 179.72897 * 14 12 10 16 16 C 1.53003 * 109.46708 * 180.02562 * 15 14 12 17 17 C 1.50708 * 109.46949 * 179.97438 * 16 15 14 18 18 H 1.07997 * 119.99690 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00050 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99915 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00185 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46887 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47066 * 120.00377 * 21 19 17 24 24 H 1.48499 * 109.47339 * 240.00877 * 21 19 17 25 25 C 1.53868 * 106.59801 * 336.38716 * 6 5 4 26 26 H 1.08999 * 109.46863 * 297.45593 * 1 2 3 27 27 H 1.09000 * 109.46838 * 57.45864 * 1 2 3 28 28 H 1.09005 * 109.46761 * 177.45640 * 1 2 3 29 29 H 1.08991 * 110.75769 * 321.69246 * 4 2 1 30 30 H 1.09003 * 110.75511 * 85.06598 * 4 2 1 31 31 H 1.08999 * 110.48928 * 279.25894 * 5 4 2 32 32 H 1.09004 * 110.48600 * 156.62164 * 5 4 2 33 33 H 1.08998 * 109.47065 * 172.16396 * 8 6 5 34 34 H 1.09001 * 109.46892 * 52.16660 * 8 6 5 35 35 H 0.97004 * 119.99753 * 359.97438 * 9 8 6 36 36 H 0.97005 * 119.99846 * 359.72685 * 14 12 10 37 37 H 1.08998 * 109.47134 * 299.99552 * 15 14 12 38 38 H 1.08994 * 109.47397 * 59.99843 * 15 14 12 39 39 H 1.09000 * 109.47195 * 299.99415 * 16 15 14 40 40 H 1.08994 * 109.47584 * 59.99634 * 16 15 14 41 41 H 0.97000 * 120.00246 * 179.97438 * 20 19 17 42 42 H 1.09004 * 110.03152 * 119.28148 * 25 6 5 43 43 H 1.08996 * 110.03456 * 240.66612 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0721 -0.7835 -1.2212 5 6 3.4907 -1.1988 -0.7585 6 6 3.3166 -1.5396 0.7359 7 1 3.1697 -2.6125 0.8603 8 6 4.5466 -1.0846 1.5240 9 7 5.7017 -1.8998 1.1399 10 6 6.9030 -1.6767 1.7088 11 8 7.0277 -0.8009 2.5394 12 6 8.0811 -2.5087 1.3173 13 8 7.9551 -3.3883 0.4911 14 7 9.2826 -2.2852 1.8858 15 6 10.4362 -3.1047 1.5065 16 6 11.6666 -2.6483 2.2931 17 6 12.8532 -3.4917 1.9034 18 1 12.7408 -4.2751 1.1685 19 6 14.0823 -3.2632 2.4850 20 7 14.2190 -2.3095 3.3802 21 14 15.5529 -4.3090 2.0025 22 1 15.1380 -5.3063 0.9834 23 1 16.6157 -3.4385 1.4386 24 1 16.0741 -5.0134 3.2014 25 6 2.0700 -0.7773 1.2182 26 1 -0.3633 0.4738 0.9119 27 1 -0.3633 0.5528 -0.8663 28 1 -0.3633 -1.0267 -0.0456 29 1 1.4582 -1.6618 -1.4202 30 1 2.1252 -0.1407 -2.1000 31 1 4.1898 -0.3718 -0.8823 32 1 3.8317 -2.0738 -1.3121 33 1 4.3581 -1.2015 2.5912 34 1 4.7520 -0.0370 1.3039 35 1 5.6019 -2.6001 0.4762 36 1 9.3835 -1.5818 2.5461 37 1 10.2287 -4.1507 1.7320 38 1 10.6254 -2.9938 0.4388 39 1 11.8744 -1.6023 2.0680 40 1 11.4772 -2.7595 3.3607 41 1 15.0835 -2.1490 3.7897 42 1 1.3177 -1.4803 1.5758 43 1 2.3411 -0.0839 2.0142 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326791689.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:54 Heat of formation + Delta-G solvation = -109.016357 kcal Electronic energy + Delta-G solvation = -21365.859678 eV Core-core repulsion = 18023.465165 eV Total energy + Delta-G solvation = -3342.394514 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.46723 -39.18433 -38.10730 -35.48042 -34.68850 -32.85697 -31.74265 -29.85211 -29.67923 -26.95651 -25.42899 -24.35110 -22.91352 -21.03207 -20.72776 -20.39295 -19.70386 -18.20282 -16.88802 -16.43233 -15.99737 -15.99537 -15.42392 -14.94185 -14.73662 -14.49624 -14.38896 -13.98045 -13.67311 -13.42061 -13.34868 -13.04571 -12.72210 -12.32938 -12.21797 -11.61998 -11.43743 -11.25487 -11.22086 -11.18188 -11.07581 -11.03839 -10.93536 -10.79525 -10.64955 -10.40374 -9.78770 -9.43138 -9.31595 -9.17465 -8.68822 -8.41906 -6.10191 -4.13787 1.63878 2.56997 3.27969 3.35568 3.40168 3.45355 3.88796 4.11413 4.21726 4.28393 4.40788 4.68255 4.78736 4.85478 5.01072 5.07979 5.13160 5.22854 5.23420 5.26722 5.35573 5.43560 5.49296 5.59314 5.65530 5.69445 5.77799 5.85008 6.00046 6.04055 6.17058 6.19084 6.24394 6.60543 6.70141 7.08207 7.47606 7.58169 7.68721 7.87412 7.94982 8.21868 8.35230 8.92109 9.51143 11.01327 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.057657 B = 0.002270 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.510956 B =12329.800555 C =12619.719990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 H 0.075 0.925 4 C -0.120 4.120 5 C -0.125 4.125 6 C -0.105 4.105 7 H 0.081 0.919 8 C 0.124 3.876 9 N -0.705 5.705 10 C 0.507 3.493 11 O -0.521 6.521 12 C 0.497 3.503 13 O -0.534 6.534 14 N -0.686 5.686 15 C 0.119 3.881 16 C 0.010 3.990 17 C -0.522 4.522 18 H 0.061 0.939 19 C 0.058 3.942 20 N -0.892 5.892 21 Si 0.898 3.102 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.283 1.283 25 C -0.113 4.113 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.412 0.588 36 H 0.410 0.590 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.025 0.975 40 H 0.025 0.975 41 H 0.262 0.738 42 H 0.069 0.931 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.727 4.088 -6.198 27.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 H 0.093 0.907 4 C -0.157 4.157 5 C -0.162 4.162 6 C -0.124 4.124 7 H 0.099 0.901 8 C 0.001 3.999 9 N -0.359 5.359 10 C 0.288 3.712 11 O -0.397 6.397 12 C 0.276 3.724 13 O -0.412 6.412 14 N -0.337 5.337 15 C -0.003 4.003 16 C -0.027 4.027 17 C -0.561 4.561 18 H 0.079 0.921 19 C -0.144 4.144 20 N -0.531 5.531 21 Si 0.726 3.274 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.151 4.151 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.248 0.752 36 H 0.246 0.754 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.044 0.956 40 H 0.044 0.956 41 H 0.072 0.928 42 H 0.088 0.912 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -26.565 4.174 -6.055 27.565 hybrid contribution 0.895 -0.478 -0.126 1.022 sum -25.671 3.696 -6.181 26.662 Atomic orbital electron populations 1.21809 0.94998 1.01782 1.01622 1.21990 0.95473 0.99428 0.94849 0.90690 1.22569 0.95957 0.99776 0.97443 1.22500 0.97430 1.01708 0.94567 1.22043 0.94010 1.00949 0.95431 0.90064 1.21635 0.83708 0.95240 0.99327 1.45768 1.08225 1.38044 1.43850 1.20454 0.84567 0.84315 0.81913 1.90756 1.84747 1.32282 1.31887 1.19996 0.84610 0.84739 0.83022 1.90722 1.84741 1.32738 1.33047 1.46239 1.08535 1.36894 1.42045 1.21930 0.84243 0.93883 1.00242 1.19367 0.90157 0.97618 0.95592 1.21055 0.93378 1.17606 1.24074 0.92102 1.25011 0.99071 0.95377 0.94900 1.69971 1.24533 1.31099 1.27457 0.86438 0.82335 0.80241 0.78424 1.19584 1.20930 1.20925 1.22203 0.96053 0.98919 0.97908 0.92691 0.92734 0.92625 0.91370 0.91569 0.91093 0.91278 0.91051 0.90913 0.75173 0.75388 0.91875 0.91869 0.95646 0.95644 0.92831 0.91226 0.91256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.74 9.12 37.16 0.34 -0.40 16 2 C -0.10 -0.58 3.46 -88.96 -0.31 -0.88 16 3 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 4 C -0.12 -0.72 6.33 -24.74 -0.16 -0.87 16 5 C -0.12 -0.85 6.08 -25.07 -0.15 -1.00 16 6 C -0.11 -0.72 2.96 -89.51 -0.26 -0.99 16 7 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 8 C 0.12 1.14 4.73 -4.04 -0.02 1.12 16 9 N -0.70 -8.08 5.40 -60.73 -0.33 -8.41 16 10 C 0.51 7.66 7.89 -11.59 -0.09 7.57 16 11 O -0.52 -8.94 16.48 5.50 0.09 -8.85 16 12 C 0.50 8.64 7.89 -11.58 -0.09 8.54 16 13 O -0.53 -10.15 16.48 5.50 0.09 -10.06 16 14 N -0.69 -12.65 5.55 -60.73 -0.34 -12.99 16 15 C 0.12 2.50 5.61 -4.04 -0.02 2.47 16 16 C 0.01 0.25 5.09 -27.88 -0.14 0.11 16 17 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 18 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 21 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 22 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 C -0.11 -0.68 6.03 -25.62 -0.15 -0.83 16 26 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 27 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.05 0.27 8.12 -51.93 -0.42 -0.15 16 29 H 0.07 0.39 8.04 -51.93 -0.42 -0.03 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.54 7.76 -51.93 -0.40 0.14 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.71 8.00 -51.93 -0.42 0.29 16 35 H 0.41 4.28 7.83 -40.82 -0.32 3.97 16 36 H 0.41 7.23 7.95 -40.82 -0.32 6.91 16 37 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 42 H 0.07 0.39 7.84 -51.93 -0.41 -0.02 16 43 H 0.07 0.42 7.67 -51.93 -0.40 0.02 16 LS Contribution 356.61 15.07 5.37 5.37 Total: -1.00 -30.99 356.61 -8.17 -39.16 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -7.30 Total: 3.25 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -1.47 Total: 1.66 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: 0.07 Total: -46.83 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: 0.18 Total: -18.91 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.99 -8.17 -39.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326791689.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.856 kcal (2) G-P(sol) polarization free energy of solvation -30.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds