Wall clock time and date at job start Tue Mar 31 2020 06:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 110.43215 * 2 1 4 4 C 1.54262 * 110.60008 * 237.38478 * 2 1 3 5 5 C 1.54077 * 106.62346 * 217.54208 * 4 2 1 6 6 C 1.54263 * 106.49564 * 0.17526 * 5 4 2 7 7 H 1.09005 * 110.48664 * 264.71208 * 6 5 4 8 8 C 1.52991 * 110.49038 * 142.19271 * 6 5 4 9 9 N 1.46500 * 109.47288 * 68.24288 * 8 6 5 10 10 C 1.34773 * 120.00432 * 179.97438 * 9 8 6 11 11 O 1.21353 * 120.00047 * 0.02562 * 10 9 8 12 12 C 1.49454 * 120.00135 * 179.72278 * 10 9 8 13 13 O 1.21343 * 119.99752 * 0.28157 * 12 10 9 14 14 N 1.34777 * 120.00164 * 180.27489 * 12 10 9 15 15 C 1.46499 * 120.00065 * 180.02562 * 14 12 10 16 16 C 1.53003 * 109.46671 * 180.02562 * 15 14 12 17 17 C 1.50700 * 109.46681 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00300 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00286 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99512 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00323 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46983 * 89.99936 * 21 19 17 23 23 H 1.48499 * 109.47218 * 210.00005 * 21 19 17 24 24 H 1.48505 * 109.47256 * 330.00011 * 21 19 17 25 25 C 1.54884 * 110.48940 * 122.54193 * 2 1 3 26 26 H 1.09000 * 109.47096 * 297.45672 * 1 2 3 27 27 H 1.09001 * 109.47441 * 57.45660 * 1 2 3 28 28 H 1.09000 * 109.47420 * 177.45391 * 1 2 3 29 29 H 1.09004 * 110.03218 * 336.94316 * 4 2 1 30 30 H 1.09001 * 110.03226 * 98.31719 * 4 2 1 31 31 H 1.08995 * 110.16439 * 240.88129 * 5 4 2 32 32 H 1.09006 * 110.00783 * 119.38227 * 5 4 2 33 33 H 1.09000 * 109.47648 * 308.24179 * 8 6 5 34 34 H 1.09001 * 109.47172 * 188.24123 * 8 6 5 35 35 H 0.97001 * 119.99454 * 0.02562 * 9 8 6 36 36 H 0.97000 * 119.99555 * 0.02562 * 14 12 10 37 37 H 1.08994 * 109.46952 * 300.00262 * 15 14 12 38 38 H 1.08992 * 109.46844 * 60.00609 * 15 14 12 39 39 H 1.08994 * 109.47336 * 299.99647 * 16 15 14 40 40 H 1.08992 * 109.47300 * 60.00508 * 16 15 14 41 41 H 0.96999 * 119.99804 * 180.02562 * 20 19 17 42 42 H 1.09005 * 110.75453 * 38.43721 * 25 2 1 43 43 H 1.08998 * 110.76006 * 275.07317 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0727 -0.7783 -1.2163 5 6 3.3236 -1.5364 -0.7320 6 6 3.4920 -1.1940 0.7627 7 1 4.1898 -0.3661 0.8881 8 6 3.9718 -2.4199 1.5422 9 7 5.3434 -2.7459 1.1438 10 6 5.9764 -3.7956 1.7039 11 8 5.4101 -4.4712 2.5379 12 6 7.3734 -4.1319 1.2929 13 8 7.9396 -3.4566 0.4587 14 7 8.0045 -5.1850 1.8490 15 6 9.3741 -5.5142 1.4465 16 6 9.8519 -6.7436 2.2220 17 6 11.2610 -7.0819 1.8085 18 1 11.7652 -6.4806 1.0665 19 6 11.9066 -8.1592 2.3774 20 7 11.2925 -8.8918 3.2806 21 14 13.6530 -8.5790 1.8643 22 1 14.6126 -7.8586 2.7392 23 1 13.8685 -10.0426 1.9930 24 1 13.8663 -8.1694 0.4529 25 6 2.0721 -0.7804 1.2231 26 1 -0.3633 0.4738 0.9119 27 1 -0.3634 0.5528 -0.8663 28 1 -0.3634 -1.0266 -0.0457 29 1 1.3221 -1.4832 -1.5738 30 1 2.3428 -0.0851 -2.0129 31 1 4.2006 -1.2101 -1.2909 32 1 3.1800 -2.6100 -0.8552 33 1 3.3198 -3.2662 1.3259 34 1 3.9452 -2.2045 2.6104 35 1 5.7962 -2.2057 0.4774 36 1 7.5518 -5.7249 2.5157 37 1 9.3974 -5.7275 0.3779 38 1 10.0291 -4.6705 1.6631 39 1 9.8285 -6.5307 3.2907 40 1 9.1968 -7.5872 2.0051 41 1 11.7468 -9.6494 3.6811 42 1 1.4594 -1.6596 1.4228 43 1 2.1229 -0.1363 2.1009 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326791690.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:58 Heat of formation + Delta-G solvation = -109.286128 kcal Electronic energy + Delta-G solvation = -21342.746579 eV Core-core repulsion = 18000.340367 eV Total energy + Delta-G solvation = -3342.406212 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.45650 -39.14717 -38.11007 -35.49167 -34.70067 -32.85645 -31.75517 -29.84351 -29.64889 -27.02001 -25.44533 -24.32141 -22.92064 -21.05679 -20.78474 -19.97643 -19.95148 -18.20208 -16.83294 -16.60871 -16.22905 -15.77796 -15.38770 -14.93589 -14.64825 -14.52841 -14.31487 -13.96916 -13.81064 -13.44262 -13.38833 -13.02923 -12.65304 -12.32255 -12.26441 -11.58315 -11.42590 -11.32060 -11.22996 -11.14534 -11.06093 -11.04745 -10.98875 -10.73768 -10.66497 -10.39381 -9.78799 -9.43659 -9.31716 -9.18180 -8.68659 -8.41450 -6.09920 -4.13557 1.63900 2.56583 3.29158 3.35400 3.39121 3.45368 3.87880 4.10826 4.18549 4.30926 4.40895 4.72933 4.78929 4.86574 4.96387 5.01840 5.16004 5.20806 5.26910 5.28224 5.29226 5.41540 5.52179 5.58828 5.65065 5.71886 5.77331 5.84744 6.00087 6.04789 6.16287 6.19044 6.24468 6.60589 6.70186 7.08175 7.47554 7.58343 7.68709 7.87491 7.95005 8.22021 8.35295 8.92040 9.51255 11.01555 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.057195 B = 0.002262 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.434225 B =12376.159612 C =12671.520999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.074 0.926 4 C -0.120 4.120 5 C -0.124 4.124 6 C -0.106 4.106 7 H 0.083 0.917 8 C 0.125 3.875 9 N -0.705 5.705 10 C 0.507 3.493 11 O -0.521 6.521 12 C 0.497 3.503 13 O -0.534 6.534 14 N -0.686 5.686 15 C 0.119 3.881 16 C 0.011 3.989 17 C -0.523 4.523 18 H 0.060 0.940 19 C 0.059 3.941 20 N -0.892 5.892 21 Si 0.898 3.102 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.273 1.273 25 C -0.111 4.111 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.412 0.588 36 H 0.410 0.590 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.025 0.975 40 H 0.025 0.975 41 H 0.263 0.737 42 H 0.073 0.927 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.761 17.484 -5.817 27.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 H 0.092 0.908 4 C -0.158 4.158 5 C -0.162 4.162 6 C -0.125 4.125 7 H 0.102 0.898 8 C 0.002 3.998 9 N -0.359 5.359 10 C 0.288 3.712 11 O -0.397 6.397 12 C 0.276 3.724 13 O -0.413 6.413 14 N -0.337 5.337 15 C -0.003 4.003 16 C -0.027 4.027 17 C -0.562 4.562 18 H 0.078 0.922 19 C -0.143 4.143 20 N -0.531 5.531 21 Si 0.726 3.274 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.197 1.197 25 C -0.149 4.149 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.248 0.752 36 H 0.246 0.754 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.043 0.957 40 H 0.044 0.956 41 H 0.072 0.928 42 H 0.092 0.908 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -20.724 17.287 -5.695 27.582 hybrid contribution 0.967 -0.322 -0.191 1.037 sum -19.757 16.966 -5.886 26.698 Atomic orbital electron populations 1.21806 0.94919 1.01897 1.01610 1.21956 0.95548 0.99287 0.94823 0.90777 1.22248 0.97172 0.98846 0.97530 1.22297 0.98232 1.00830 0.94835 1.22266 0.97853 0.97119 0.95281 0.89815 1.21520 0.81817 0.97127 0.99379 1.45758 1.15506 1.30915 1.43695 1.20457 0.87595 0.81212 0.81986 1.90757 1.67374 1.49798 1.31730 1.19996 0.86652 0.82602 0.83118 1.90723 1.67249 1.50656 1.32628 1.46235 1.17167 1.28565 1.41739 1.21931 0.78204 1.00121 1.00044 1.19359 0.96815 0.90840 0.95677 1.21014 0.98366 1.13051 1.23758 0.92165 1.25009 0.98374 0.96034 0.94914 1.69960 1.37427 1.18241 1.27422 0.86490 0.84340 0.77498 0.79079 1.20556 1.21157 1.19734 1.22553 0.94558 1.00143 0.97669 0.92649 0.92754 0.92535 0.91649 0.91908 0.91468 0.91313 0.90913 0.90986 0.75172 0.75387 0.91876 0.91873 0.95655 0.95647 0.92777 0.90843 0.91194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.15 37.16 0.34 -0.40 16 2 C -0.10 -0.55 3.45 -88.97 -0.31 -0.86 16 3 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 4 C -0.12 -0.73 6.38 -25.51 -0.16 -0.89 16 5 C -0.12 -0.86 6.15 -25.51 -0.16 -1.01 16 6 C -0.11 -0.73 2.90 -88.97 -0.26 -0.98 16 7 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 8 C 0.12 1.14 4.99 -4.05 -0.02 1.12 16 9 N -0.70 -8.07 5.41 -60.73 -0.33 -8.40 16 10 C 0.51 7.65 7.89 -11.59 -0.09 7.56 16 11 O -0.52 -8.93 16.48 5.49 0.09 -8.84 16 12 C 0.50 8.63 7.89 -11.58 -0.09 8.54 16 13 O -0.53 -10.15 16.48 5.50 0.09 -10.06 16 14 N -0.69 -12.65 5.55 -60.73 -0.34 -12.98 16 15 C 0.12 2.50 5.61 -4.04 -0.02 2.47 16 16 C 0.01 0.26 5.09 -27.88 -0.14 0.12 16 17 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16 18 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 21 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 25 C -0.11 -0.66 5.75 -24.74 -0.14 -0.80 16 26 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.29 8.08 -51.93 -0.42 -0.13 16 29 H 0.06 0.40 7.80 -51.93 -0.41 -0.01 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.53 7.74 -51.93 -0.40 0.13 16 33 H 0.07 0.70 8.01 -51.93 -0.42 0.29 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.41 4.29 7.85 -40.82 -0.32 3.97 16 36 H 0.41 7.23 7.94 -40.82 -0.32 6.91 16 37 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.07 0.45 7.98 -51.93 -0.41 0.03 16 43 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 357.04 15.07 5.38 5.38 Total: -1.00 -30.96 357.04 -8.17 -39.13 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -7.32 Total: 3.23 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -1.47 Total: 1.67 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: 0.07 Total: -46.81 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: 0.18 Total: -18.90 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.96 -8.17 -39.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326791690.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.160 kcal (2) G-P(sol) polarization free energy of solvation -30.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds