Wall clock time and date at job start Tue Mar 31 2020 06:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 110.43215 * 2 1 4 4 C 1.54262 * 110.60008 * 237.38478 * 2 1 3 5 5 C 1.54077 * 106.62346 * 217.54208 * 4 2 1 6 6 C 1.54263 * 106.49564 * 0.17526 * 5 4 2 7 7 H 1.09005 * 110.48664 * 264.71208 * 6 5 4 8 8 C 1.52991 * 110.49038 * 142.19271 * 6 5 4 9 9 N 1.46500 * 109.47288 * 68.24288 * 8 6 5 10 10 C 1.34773 * 120.00432 * 179.97438 * 9 8 6 11 11 O 1.21353 * 120.00047 * 0.02562 * 10 9 8 12 12 C 1.49454 * 120.00135 * 179.72278 * 10 9 8 13 13 O 1.21343 * 119.99752 * 0.28157 * 12 10 9 14 14 N 1.34777 * 120.00164 * 180.27489 * 12 10 9 15 15 C 1.46499 * 120.00065 * 180.02562 * 14 12 10 16 16 C 1.53003 * 109.46671 * 180.02562 * 15 14 12 17 17 C 1.50700 * 109.46681 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00300 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00286 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99512 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00323 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46983 * 89.99936 * 21 19 17 23 23 H 1.48499 * 109.47218 * 210.00005 * 21 19 17 24 24 H 1.48505 * 109.47256 * 330.00011 * 21 19 17 25 25 C 1.54884 * 110.48940 * 122.54193 * 2 1 3 26 26 H 1.09000 * 109.47096 * 297.45672 * 1 2 3 27 27 H 1.09001 * 109.47441 * 57.45660 * 1 2 3 28 28 H 1.09000 * 109.47420 * 177.45391 * 1 2 3 29 29 H 1.09004 * 110.03218 * 336.94316 * 4 2 1 30 30 H 1.09001 * 110.03226 * 98.31719 * 4 2 1 31 31 H 1.08995 * 110.16439 * 240.88129 * 5 4 2 32 32 H 1.09006 * 110.00783 * 119.38227 * 5 4 2 33 33 H 1.09000 * 109.47648 * 308.24179 * 8 6 5 34 34 H 1.09001 * 109.47172 * 188.24123 * 8 6 5 35 35 H 0.97001 * 119.99454 * 0.02562 * 9 8 6 36 36 H 0.97000 * 119.99555 * 0.02562 * 14 12 10 37 37 H 1.08994 * 109.46952 * 300.00262 * 15 14 12 38 38 H 1.08992 * 109.46844 * 60.00609 * 15 14 12 39 39 H 1.08994 * 109.47336 * 299.99647 * 16 15 14 40 40 H 1.08992 * 109.47300 * 60.00508 * 16 15 14 41 41 H 0.96999 * 119.99804 * 180.02562 * 20 19 17 42 42 H 1.09005 * 110.75453 * 38.43721 * 25 2 1 43 43 H 1.08998 * 110.76006 * 275.07317 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0727 -0.7783 -1.2163 5 6 3.3236 -1.5364 -0.7320 6 6 3.4920 -1.1940 0.7627 7 1 4.1898 -0.3661 0.8881 8 6 3.9718 -2.4199 1.5422 9 7 5.3434 -2.7459 1.1438 10 6 5.9764 -3.7956 1.7039 11 8 5.4101 -4.4712 2.5379 12 6 7.3734 -4.1319 1.2929 13 8 7.9396 -3.4566 0.4587 14 7 8.0045 -5.1850 1.8490 15 6 9.3741 -5.5142 1.4465 16 6 9.8519 -6.7436 2.2220 17 6 11.2610 -7.0819 1.8085 18 1 11.7652 -6.4806 1.0665 19 6 11.9066 -8.1592 2.3774 20 7 11.2925 -8.8918 3.2806 21 14 13.6530 -8.5790 1.8643 22 1 14.6126 -7.8586 2.7392 23 1 13.8685 -10.0426 1.9930 24 1 13.8663 -8.1694 0.4529 25 6 2.0721 -0.7804 1.2231 26 1 -0.3633 0.4738 0.9119 27 1 -0.3634 0.5528 -0.8663 28 1 -0.3634 -1.0266 -0.0457 29 1 1.3221 -1.4832 -1.5738 30 1 2.3428 -0.0851 -2.0129 31 1 4.2006 -1.2101 -1.2909 32 1 3.1800 -2.6100 -0.8552 33 1 3.3198 -3.2662 1.3259 34 1 3.9452 -2.2045 2.6104 35 1 5.7962 -2.2057 0.4774 36 1 7.5518 -5.7249 2.5157 37 1 9.3974 -5.7275 0.3779 38 1 10.0291 -4.6705 1.6631 39 1 9.8285 -6.5307 3.2907 40 1 9.1968 -7.5872 2.0051 41 1 11.7468 -9.6494 3.6811 42 1 1.4594 -1.6596 1.4228 43 1 2.1229 -0.1363 2.1009 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326791690.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:58 Heat of formation + Delta-G solvation = -129.793055 kcal Electronic energy + Delta-G solvation = -21343.635826 eV Core-core repulsion = 18000.340367 eV Total energy + Delta-G solvation = -3343.295459 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.72355 -39.99143 -39.23916 -36.93622 -35.93128 -34.80593 -32.42046 -31.69439 -30.25201 -27.99434 -26.91743 -25.28551 -24.13829 -22.80085 -21.66512 -21.02075 -20.50416 -19.46130 -18.58090 -17.82948 -17.33534 -16.94615 -16.57065 -16.47473 -16.11736 -15.88599 -15.14055 -15.00303 -14.76346 -14.44510 -14.31092 -14.29250 -13.88999 -13.46503 -13.26431 -12.94749 -12.86207 -12.76837 -12.52987 -12.28677 -12.01534 -11.89201 -11.69771 -11.66449 -11.57294 -11.44795 -11.43576 -11.23309 -10.68523 -10.61837 -10.33765 -10.19767 -8.23647 -6.34907 0.31715 1.32399 1.43684 1.43777 1.55416 2.11706 2.39844 2.68988 3.11229 3.42346 3.56056 3.63658 3.78860 4.21615 4.27955 4.38284 4.43568 4.44693 4.49049 4.65107 4.71632 4.72499 4.79679 4.80839 4.82580 4.97927 5.07392 5.09316 5.13659 5.16462 5.21747 5.37408 5.37993 5.42102 5.47915 5.54413 5.60248 5.75203 5.93005 6.12559 6.35663 6.70405 6.79515 6.92465 7.34578 8.88362 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.057195 B = 0.002262 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.434225 B =12376.159612 C =12671.520999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 H 0.078 0.922 4 C -0.120 4.120 5 C -0.126 4.126 6 C -0.099 4.099 7 H 0.091 0.909 8 C 0.123 3.877 9 N -0.685 5.685 10 C 0.512 3.488 11 O -0.544 6.544 12 C 0.500 3.500 13 O -0.549 6.549 14 N -0.689 5.689 15 C 0.138 3.862 16 C 0.018 3.982 17 C -0.545 4.545 18 H 0.065 0.935 19 C 0.004 3.996 20 N -0.928 5.928 21 Si 0.969 3.031 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.263 1.263 25 C -0.109 4.109 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.419 0.581 36 H 0.414 0.586 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.008 0.992 40 H 0.008 0.992 41 H 0.265 0.735 42 H 0.071 0.929 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.992 18.779 -6.547 28.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 H 0.096 0.904 4 C -0.157 4.157 5 C -0.164 4.164 6 C -0.117 4.117 7 H 0.109 0.891 8 C 0.001 3.999 9 N -0.338 5.338 10 C 0.293 3.707 11 O -0.422 6.422 12 C 0.280 3.720 13 O -0.428 6.428 14 N -0.340 5.340 15 C 0.015 3.985 16 C -0.020 4.020 17 C -0.583 4.583 18 H 0.083 0.917 19 C -0.195 4.195 20 N -0.567 5.567 21 Si 0.793 3.207 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.188 1.188 25 C -0.147 4.147 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.257 0.743 36 H 0.251 0.749 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.026 0.974 40 H 0.026 0.974 41 H 0.074 0.926 42 H 0.090 0.910 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -20.983 18.627 -6.448 28.790 hybrid contribution 0.965 -0.675 0.019 1.178 sum -20.018 17.952 -6.429 27.647 Atomic orbital electron populations 1.21796 0.94503 1.01866 1.01991 1.21952 0.95893 0.99305 0.94275 0.90376 1.22245 0.96727 0.98869 0.97878 1.22305 0.98771 1.00382 0.94895 1.22229 0.98552 0.96077 0.94883 0.89056 1.21714 0.80162 0.98124 0.99887 1.45765 1.16148 1.29302 1.42585 1.19969 0.86515 0.82077 0.82181 1.90758 1.67467 1.50928 1.32996 1.20364 0.87534 0.81699 0.82381 1.90712 1.67919 1.50969 1.33176 1.46080 1.16361 1.29341 1.42235 1.21481 0.79603 0.98267 0.99148 1.19182 0.95880 0.91862 0.95036 1.21451 0.99616 1.13338 1.23899 0.91672 1.25937 1.02833 0.95911 0.94832 1.70080 1.39312 1.18807 1.28545 0.85387 0.78935 0.77279 0.79086 1.19776 1.20761 1.18757 1.22558 0.93722 1.00301 0.98153 0.92258 0.92423 0.92780 0.91751 0.91517 0.91366 0.92257 0.91152 0.90842 0.74335 0.74946 0.92016 0.91972 0.97407 0.97412 0.92576 0.90985 0.90424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.15 71.98 0.66 -0.58 16 2 C -0.10 -0.90 3.45 -9.72 -0.03 -0.93 16 3 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 4 C -0.12 -1.26 6.38 31.39 0.20 -1.06 16 5 C -0.13 -1.55 6.15 31.39 0.19 -1.35 16 6 C -0.10 -1.17 2.90 -9.72 -0.03 -1.20 16 7 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 8 C 0.12 2.08 4.99 86.38 0.43 2.51 16 9 N -0.69 -14.75 5.41 -464.42 -2.51 -17.26 16 10 C 0.51 15.05 7.89 87.27 0.69 15.74 16 11 O -0.54 -18.33 16.48 -3.26 -0.05 -18.38 16 12 C 0.50 17.06 7.89 87.27 0.69 17.75 16 13 O -0.55 -20.33 16.48 -3.23 -0.05 -20.39 16 14 N -0.69 -25.41 5.55 -464.43 -2.58 -27.99 16 15 C 0.14 5.81 5.61 86.38 0.48 6.30 16 16 C 0.02 0.91 5.09 29.85 0.15 1.06 16 17 C -0.54 -30.16 9.11 25.60 0.23 -29.93 16 18 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 19 C 0.00 0.20 5.46 84.66 0.46 0.66 16 20 N -0.93 -54.98 13.29 21.45 0.28 -54.70 16 21 Si 0.97 43.46 29.54 68.60 2.03 45.49 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 24 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 25 C -0.11 -1.09 5.75 31.88 0.18 -0.91 16 26 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.05 0.49 8.08 -2.39 -0.02 0.47 16 29 H 0.06 0.70 7.80 -2.39 -0.02 0.68 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.06 0.85 7.74 -2.38 -0.02 0.83 16 33 H 0.07 1.27 8.01 -2.39 -0.02 1.25 16 34 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.42 8.03 7.85 -92.71 -0.73 7.30 16 36 H 0.41 14.76 7.94 -92.71 -0.74 14.03 16 37 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 39 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 42 H 0.07 0.76 7.98 -2.38 -0.02 0.74 16 43 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -64.94 357.04 0.96 -63.97 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: -0.46 Total: 21.19 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: 4.31 Total: 8.07 kcal Atomic # 7 Polarization: -95.14 SS G_CDS: -4.80 Total: -99.95 kcal Atomic # 8 Polarization: -38.66 SS G_CDS: -0.11 Total: -38.77 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -64.94 0.96 -63.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326791690.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.818 kcal (2) G-P(sol) polarization free energy of solvation -64.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds