Wall clock time and date at job start Tue Mar 31 2020 06:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09008 * 110.63953 * 2 1 4 4 C 1.55158 * 110.87543 * 236.75318 * 2 1 3 5 5 C 1.55127 * 101.48522 * 205.89703 * 4 2 1 6 6 N 1.47427 * 104.72341 * 37.29354 * 5 4 2 7 7 C 1.34780 * 125.65041 * 155.81277 * 6 5 4 8 8 O 1.21347 * 120.00101 * 179.69571 * 7 6 5 9 9 C 1.49457 * 119.99667 * 359.69710 * 7 6 5 10 10 O 1.21348 * 119.99763 * 359.97438 * 9 7 6 11 11 N 1.34771 * 119.99493 * 179.97438 * 9 7 6 12 12 C 1.46505 * 119.99622 * 180.02562 * 11 9 7 13 13 C 1.52997 * 109.47212 * 179.97438 * 12 11 9 14 14 C 1.53006 * 109.47127 * 300.00138 * 13 12 11 15 15 C 1.52999 * 109.47317 * 59.99649 * 13 12 11 16 16 C 1.50697 * 109.47466 * 179.97438 * 13 12 11 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 13 12 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 13 12 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 13 21 21 H 1.48506 * 109.46838 * 89.99826 * 20 18 16 22 22 H 1.48497 * 109.47419 * 209.99978 * 20 18 16 23 23 H 1.48499 * 109.47011 * 330.00539 * 20 18 16 24 24 C 1.47020 * 108.70428 * 335.55438 * 6 5 4 25 25 H 1.08997 * 109.47175 * 298.31086 * 1 2 3 26 26 H 1.08999 * 109.46977 * 58.31215 * 1 2 3 27 27 H 1.08998 * 109.46831 * 178.30906 * 1 2 3 28 28 H 1.08995 * 111.00098 * 324.13546 * 4 2 1 29 29 H 1.09001 * 111.00164 * 87.98723 * 4 2 1 30 30 H 1.08996 * 110.50143 * 278.45385 * 5 4 2 31 31 H 1.09001 * 110.34542 * 156.05643 * 5 4 2 32 32 H 0.96996 * 120.00772 * 359.97438 * 11 9 7 33 33 H 1.09002 * 109.47068 * 299.99729 * 12 11 9 34 34 H 1.09001 * 109.47372 * 59.99816 * 12 11 9 35 35 H 1.08993 * 109.46955 * 60.00011 * 14 13 12 36 36 H 1.09000 * 109.47050 * 179.97438 * 14 13 12 37 37 H 1.09001 * 109.47002 * 299.99574 * 14 13 12 38 38 H 1.09002 * 109.46716 * 60.00091 * 15 13 12 39 39 H 1.09000 * 109.47486 * 180.02562 * 15 13 12 40 40 H 1.09001 * 109.47362 * 300.00732 * 15 13 12 41 41 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 42 42 H 1.09002 * 109.88703 * 120.69896 * 24 6 5 43 43 H 1.08997 * 109.88651 * 241.71519 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0201 0.0000 4 6 2.0829 -0.7948 -1.2124 5 6 3.4708 -1.2412 -0.6822 6 7 3.2472 -1.5460 0.7427 7 6 3.9957 -2.3766 1.4952 8 8 3.7212 -2.5492 2.6646 9 6 5.1640 -3.0851 0.8894 10 8 5.4381 -2.9128 -0.2801 11 7 5.9128 -3.9153 1.6420 12 6 7.0583 -4.6094 1.0483 13 6 7.7318 -5.4819 2.1093 14 6 8.2120 -4.6009 3.2644 15 6 6.7289 -6.5106 2.6354 16 6 8.9097 -6.1964 1.4985 17 1 9.1538 -6.0431 0.4576 18 6 9.6764 -7.0450 2.2686 19 7 9.3794 -7.2313 3.5362 20 14 11.1360 -7.9311 1.5112 21 1 12.3546 -7.0958 1.6616 22 1 11.3385 -9.2306 2.2009 23 1 10.8755 -8.1713 0.0691 24 6 2.0760 -0.7891 1.2087 25 1 -0.3633 0.4874 0.9047 26 1 -0.3633 0.5398 -0.8745 27 1 -0.3633 -1.0272 -0.0303 28 1 1.4516 -1.6546 -1.4366 29 1 2.1887 -0.1514 -2.0859 30 1 4.1971 -0.4354 -0.7883 31 1 3.8104 -2.1313 -1.2118 32 1 5.6939 -4.0527 2.5769 33 1 6.7162 -5.2367 0.2251 34 1 7.7730 -3.8765 0.6738 35 1 7.3598 -4.0846 3.7061 36 1 8.6914 -5.2227 4.0205 37 1 8.9266 -3.8681 2.8897 38 1 6.3867 -7.1382 1.8125 39 1 7.2085 -7.1320 3.3917 40 1 5.8766 -5.9942 3.0771 41 1 9.9190 -7.8280 4.0781 42 1 1.3140 -1.4754 1.5781 43 1 2.3705 -0.1010 2.0011 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328888416.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:15 Heat of formation + Delta-G solvation = -76.947157 kcal Electronic energy + Delta-G solvation = -22687.621438 eV Core-core repulsion = 19346.617549 eV Total energy + Delta-G solvation = -3341.003889 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -40.60671 -38.82719 -37.60032 -36.45091 -33.58294 -32.88297 -30.88437 -29.82993 -27.50449 -25.94109 -25.71734 -25.20474 -23.71111 -22.18173 -20.54363 -19.73524 -18.83216 -17.69018 -16.80731 -16.50925 -15.83174 -15.39621 -15.07731 -14.74529 -14.21035 -14.10624 -13.72947 -13.60465 -13.15003 -13.08383 -12.90455 -12.80352 -12.50406 -12.22622 -12.03023 -11.51231 -11.39607 -11.23720 -11.17645 -11.07715 -10.88207 -10.79061 -10.69752 -10.39505 -10.19877 -9.64830 -9.48221 -9.15718 -8.84630 -8.79641 -8.56859 -8.36774 -6.02587 -4.13467 1.68848 2.48489 3.28004 3.35176 3.38474 3.48572 3.75716 4.21757 4.34952 4.39323 4.50813 4.79277 5.02683 5.08443 5.11759 5.24027 5.32735 5.39211 5.52979 5.65458 5.67523 5.80523 5.81583 5.99206 6.09345 6.12295 6.23844 6.47495 6.65349 6.84716 6.85814 6.94979 7.00827 7.18205 7.33429 7.55531 7.61503 7.69475 7.99001 8.00324 8.13499 8.33613 8.42504 8.86817 9.52448 10.98845 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.043824 B = 0.003268 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.759749 B = 8567.049388 C = 8946.729402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.106 4.106 3 H 0.086 0.914 4 C -0.132 4.132 5 C 0.097 3.903 6 N -0.596 5.596 7 C 0.519 3.481 8 O -0.523 6.523 9 C 0.499 3.501 10 O -0.532 6.532 11 N -0.680 5.680 12 C 0.129 3.871 13 C 0.056 3.944 14 C -0.134 4.134 15 C -0.134 4.134 16 C -0.507 4.507 17 H 0.058 0.942 18 C 0.067 3.933 19 N -0.884 5.884 20 Si 0.894 3.106 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C 0.109 3.891 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.104 0.896 32 H 0.411 0.589 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.008 0.992 36 H 0.087 0.913 37 H 0.027 0.973 38 H 0.027 0.973 39 H 0.087 0.913 40 H 0.008 0.992 41 H 0.260 0.740 42 H 0.072 0.928 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.955 12.841 -6.163 20.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.125 4.125 3 H 0.104 0.896 4 C -0.170 4.170 5 C -0.025 4.025 6 N -0.331 5.331 7 C 0.303 3.697 8 O -0.399 6.399 9 C 0.279 3.721 10 O -0.410 6.410 11 N -0.332 5.332 12 C 0.007 3.993 13 C 0.055 3.945 14 C -0.192 4.192 15 C -0.191 4.191 16 C -0.546 4.546 17 H 0.077 0.923 18 C -0.135 4.135 19 N -0.523 5.523 20 Si 0.722 3.278 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.014 4.014 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.090 0.910 31 H 0.123 0.877 32 H 0.248 0.752 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.027 0.973 36 H 0.106 0.894 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.106 0.894 40 H 0.027 0.973 41 H 0.071 0.929 42 H 0.090 0.910 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.757 12.670 -6.134 20.395 hybrid contribution 0.723 -0.483 0.099 0.875 sum -14.035 12.188 -6.035 19.543 Atomic orbital electron populations 1.21749 0.93658 1.02349 1.02151 1.22249 0.96426 0.99444 0.94364 0.89584 1.22999 0.96123 1.00353 0.97573 1.22716 0.96725 1.02928 0.80172 1.48255 1.29090 1.43362 1.12381 1.20203 0.83816 0.79811 0.85880 1.90752 1.70334 1.62919 1.15887 1.19855 0.83969 0.81489 0.86810 1.90665 1.70404 1.64014 1.15922 1.46218 1.29386 1.42560 1.15017 1.21939 0.84816 0.94826 0.97715 1.18377 0.93553 0.91418 0.91107 1.21860 0.98001 0.98484 1.00815 1.21857 0.96204 0.99897 1.01177 1.20951 1.11210 1.25792 0.96651 0.92349 1.24887 0.97447 0.96338 0.94830 1.69813 1.39180 1.37199 1.06083 0.86553 0.82789 0.79036 0.79375 1.20707 1.21254 1.19897 1.22117 0.87500 0.94766 0.96994 0.92245 0.92017 0.92244 0.90395 0.89674 0.90975 0.87748 0.75210 0.92009 0.92020 0.97269 0.89429 0.95348 0.95343 0.89435 0.97275 0.92936 0.90953 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 9.14 37.16 0.34 -0.49 16 2 C -0.11 -0.78 3.53 -88.78 -0.31 -1.09 16 3 H 0.09 0.56 8.14 -51.92 -0.42 0.14 16 4 C -0.13 -1.03 6.55 -24.46 -0.16 -1.19 16 5 C 0.10 1.08 6.08 -2.41 -0.01 1.07 16 6 N -0.60 -7.97 3.32 -170.88 -0.57 -8.54 16 7 C 0.52 8.66 7.91 -11.58 -0.09 8.57 16 8 O -0.52 -9.74 16.80 5.50 0.09 -9.65 16 9 C 0.50 9.06 7.86 -11.58 -0.09 8.97 16 10 O -0.53 -10.11 13.77 5.50 0.08 -10.04 16 11 N -0.68 -12.96 4.95 -60.73 -0.30 -13.26 16 12 C 0.13 2.72 4.50 -4.04 -0.02 2.70 16 13 C 0.06 1.31 0.50 -155.66 -0.08 1.24 16 14 C -0.13 -3.10 8.08 37.16 0.30 -2.80 16 15 C -0.13 -3.09 8.08 37.16 0.30 -2.79 16 16 C -0.51 -13.22 8.01 -34.44 -0.28 -13.49 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 18 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 19 N -0.88 -23.71 9.35 55.43 0.52 -23.19 16 20 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 24 C 0.11 1.13 6.46 -3.06 -0.02 1.11 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 28 H 0.08 0.60 8.05 -51.93 -0.42 0.19 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.10 1.36 6.14 -51.93 -0.32 1.04 16 32 H 0.41 7.76 5.63 -40.82 -0.23 7.53 16 33 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 36 H 0.09 2.23 6.07 -51.93 -0.32 1.91 16 37 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.09 2.22 6.07 -51.93 -0.32 1.91 16 40 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 41 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 42 H 0.07 0.76 7.82 -51.93 -0.41 0.36 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 340.04 15.07 5.12 5.12 Total: -1.00 -28.51 340.04 -7.20 -35.71 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -6.91 Total: 4.76 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -0.22 Total: 3.46 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: -0.35 Total: -44.99 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: 0.17 Total: -19.69 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.51 -7.20 -35.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328888416.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.234 kcal (2) G-P(sol) polarization free energy of solvation -28.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds