Wall clock time and date at job start Tue Mar 31 2020 06:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 115.55979 * 2 1 4 4 C 1.52993 * 117.49634 * 214.30634 * 2 1 3 5 5 C 1.53004 * 60.00241 * 252.51375 * 4 2 1 6 6 H 1.09000 * 117.50027 * 252.48968 * 5 4 2 7 7 C 1.53003 * 117.49465 * 107.49055 * 5 4 2 8 8 N 1.46499 * 109.46534 * 116.39443 * 7 5 4 9 9 C 1.34779 * 119.99661 * 179.97438 * 8 7 5 10 10 O 1.21349 * 120.00282 * 0.02562 * 9 8 7 11 11 C 1.49450 * 120.00113 * 179.97438 * 9 8 7 12 12 O 1.21347 * 120.00064 * 0.02562 * 11 9 8 13 13 N 1.34777 * 120.00137 * 180.02562 * 11 9 8 14 14 C 1.46493 * 120.00044 * 180.02562 * 13 11 9 15 15 C 1.52998 * 109.47218 * 180.02562 * 14 13 11 16 16 C 1.53003 * 109.47435 * 59.99700 * 15 14 13 17 17 C 1.53006 * 109.47029 * 299.99473 * 15 14 13 18 18 C 1.50705 * 109.47080 * 179.97438 * 15 14 13 19 19 H 1.07991 * 120.00397 * 4.80463 * 18 15 14 20 20 C 1.37878 * 119.99769 * 184.80618 * 18 15 14 21 21 N 1.31515 * 119.99916 * 152.04924 * 20 18 15 22 22 Si 1.86804 * 120.00201 * 331.77741 * 20 18 15 23 23 H 1.48500 * 109.47135 * 180.27534 * 22 20 18 24 24 H 1.48494 * 109.46955 * 300.27368 * 22 20 18 25 25 H 1.48504 * 109.46932 * 60.27778 * 22 20 18 26 26 H 1.08998 * 109.47437 * 274.31492 * 1 2 3 27 27 H 1.09000 * 109.46884 * 34.31055 * 1 2 3 28 28 H 1.08999 * 109.47132 * 154.31040 * 1 2 3 29 29 H 1.09008 * 117.49673 * 145.02120 * 4 2 1 30 30 H 1.09005 * 117.50344 * 0.02562 * 4 2 1 31 31 H 1.08991 * 109.47307 * 356.39449 * 7 5 4 32 32 H 1.08995 * 109.46641 * 236.38971 * 7 5 4 33 33 H 0.96993 * 120.00583 * 0.02562 * 8 7 5 34 34 H 0.96995 * 119.99801 * 359.97438 * 13 11 9 35 35 H 1.08997 * 109.47681 * 59.99447 * 14 13 11 36 36 H 1.09000 * 109.47071 * 299.99517 * 14 13 11 37 37 H 1.08993 * 109.47279 * 173.28820 * 16 15 14 38 38 H 1.08998 * 109.46480 * 293.29009 * 16 15 14 39 39 H 1.09002 * 109.46762 * 53.28612 * 16 15 14 40 40 H 1.09002 * 109.46650 * 292.45692 * 17 15 14 41 41 H 1.08996 * 109.46662 * 52.45567 * 17 15 14 42 42 H 1.08999 * 109.47059 * 172.45909 * 17 15 14 43 43 H 0.96994 * 120.00116 * 354.61589 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 -0.7649 5 6 2.2364 -1.1210 0.7651 6 1 3.1716 -0.8756 1.2685 7 6 1.3587 -2.1562 1.4715 8 7 2.2057 -3.0704 2.2416 9 6 1.6465 -4.0708 2.9509 10 8 0.4415 -4.2144 2.9513 11 6 2.5105 -5.0038 3.7361 12 8 3.7154 -4.8605 3.7354 13 7 1.9513 -6.0045 4.4450 14 6 2.7982 -6.9187 5.2151 15 6 1.9206 -7.9543 5.9210 16 6 1.1294 -8.7476 4.8790 17 6 0.9497 -7.2417 6.8647 18 6 2.7919 -8.8951 6.7127 19 1 3.8559 -8.7218 6.7757 20 6 2.2305 -9.9774 7.3565 21 7 2.9454 -11.0612 7.5662 22 14 0.4568 -9.9015 7.9378 23 1 0.0981 -11.1807 8.6012 24 1 0.2993 -8.7829 8.9017 25 1 -0.4369 -9.6806 6.7726 26 1 -0.3634 0.0773 1.0247 27 1 -0.3633 0.8489 -0.5793 28 1 -0.3633 -0.9261 -0.4455 29 1 3.1715 -0.8752 -1.2682 30 1 1.6112 -1.8584 -1.2685 31 1 0.7948 -2.7213 0.7296 32 1 0.6674 -1.6481 2.1438 33 1 3.1688 -2.9554 2.2416 34 1 0.9881 -6.1188 4.4459 35 1 3.3622 -6.3536 5.9570 36 1 3.4896 -7.4267 4.5428 37 1 0.5964 -9.5617 5.3701 38 1 0.4135 -8.0887 4.3877 39 1 1.8148 -9.1573 4.1371 40 1 1.5069 -6.7875 7.6840 41 1 0.4132 -6.4671 6.3168 42 1 0.2374 -7.9629 7.2655 43 1 3.8410 -11.1298 7.2002 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348651394.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:06 Heat of formation + Delta-G solvation = -50.523372 kcal Electronic energy + Delta-G solvation = -22121.241515 eV Core-core repulsion = 18781.383447 eV Total energy + Delta-G solvation = -3339.858067 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.53313 -38.94554 -38.10465 -36.76519 -34.70213 -33.30659 -31.48762 -29.18394 -27.93732 -26.42917 -26.26236 -24.60076 -23.05954 -21.96967 -20.61333 -19.91262 -19.27895 -18.12780 -17.00018 -16.76930 -16.25587 -15.90200 -15.18728 -14.96092 -14.57745 -14.54433 -14.12197 -13.73340 -13.56795 -13.33233 -12.93424 -12.75105 -12.64640 -12.56784 -12.03092 -11.95985 -11.86765 -11.64282 -11.53417 -11.35965 -10.63406 -10.49536 -10.38496 -10.20628 -10.10561 -9.96604 -9.46168 -9.34891 -9.05718 -8.92345 -8.72087 -8.15933 -6.55065 -4.11789 1.55969 2.45593 3.27167 3.34542 3.38211 3.41417 3.62339 3.84266 4.15730 4.39731 4.41655 4.45643 4.68514 4.80347 4.89179 5.11496 5.16495 5.32426 5.39972 5.42456 5.43944 5.61169 5.73215 5.73590 5.87528 5.98368 6.09363 6.09613 6.36818 6.41125 6.49457 6.59238 6.61119 6.71615 6.91632 7.02949 7.22205 7.44039 7.58065 7.85955 8.06635 8.25972 8.32474 8.83290 9.52054 10.81928 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.042095 B = 0.002990 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.006978 B = 9363.447978 C = 9732.222005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.142 4.142 3 H 0.107 0.893 4 C -0.172 4.172 5 C -0.170 4.170 6 H 0.113 0.887 7 C 0.150 3.850 8 N -0.703 5.703 9 C 0.507 3.493 10 O -0.522 6.522 11 C 0.497 3.503 12 O -0.532 6.532 13 N -0.686 5.686 14 C 0.139 3.861 15 C 0.034 3.966 16 C -0.145 4.145 17 C -0.153 4.153 18 C -0.608 4.608 19 H 0.061 0.939 20 C 0.045 3.955 21 N -0.888 5.888 22 Si 1.048 2.952 23 H -0.299 1.299 24 H -0.287 1.287 25 H -0.276 1.276 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.413 0.587 34 H 0.409 0.591 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.023 0.977 39 H 0.046 0.954 40 H 0.055 0.945 41 H 0.030 0.970 42 H 0.043 0.957 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.164 19.994 -14.290 24.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.161 4.161 3 H 0.125 0.875 4 C -0.209 4.209 5 C -0.189 4.189 6 H 0.131 0.869 7 C 0.027 3.973 8 N -0.357 5.357 9 C 0.288 3.712 10 O -0.398 6.398 11 C 0.277 3.723 12 O -0.410 6.410 13 N -0.338 5.338 14 C 0.017 3.983 15 C 0.033 3.967 16 C -0.202 4.202 17 C -0.210 4.210 18 C -0.645 4.645 19 H 0.079 0.921 20 C -0.163 4.163 21 N -0.519 5.519 22 Si 0.880 3.120 23 H -0.227 1.227 24 H -0.214 1.214 25 H -0.204 1.204 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.250 0.750 34 H 0.247 0.753 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.042 0.958 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.049 0.951 42 H 0.061 0.939 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.308 19.101 -13.440 23.951 hybrid contribution 1.267 0.931 -0.823 1.775 sum -4.041 20.033 -14.263 24.921 Atomic orbital electron populations 1.21408 0.92542 1.02318 1.02297 1.22380 0.95674 0.94352 1.03653 0.87458 1.23249 1.02805 1.01533 0.93328 1.22543 1.01620 1.00107 0.94593 0.86890 1.20948 0.92263 0.89474 0.94622 1.45740 1.11915 1.29838 1.48187 1.20440 0.88286 0.82017 0.80436 1.90751 1.14492 1.71956 1.62571 1.19963 0.88042 0.82767 0.81542 1.90737 1.14215 1.72527 1.63480 1.46235 1.12524 1.28702 1.46343 1.21731 0.93096 0.89828 0.93643 1.18680 0.93259 0.92141 0.92639 1.22250 0.98854 0.99952 0.99158 1.22393 0.99284 0.98878 1.00406 1.21616 0.94840 1.11335 1.36741 0.92074 1.25658 1.05267 0.91212 0.94133 1.70841 1.12380 1.24998 1.43713 0.84268 0.76433 0.74469 0.76801 1.22678 1.21438 1.20357 0.91817 0.91923 0.92199 0.88500 0.88381 0.90847 0.90557 0.75040 0.75346 0.91604 0.91504 0.92346 0.95759 0.93530 0.92638 0.95122 0.93877 0.91807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.75 9.19 37.16 0.34 -0.41 16 2 C -0.14 -0.86 6.41 -90.62 -0.58 -1.44 16 3 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.17 -1.08 9.82 -26.73 -0.26 -1.34 16 5 C -0.17 -1.19 5.85 -90.61 -0.53 -1.72 16 6 H 0.11 0.73 8.04 -51.93 -0.42 0.31 16 7 C 0.15 1.38 5.04 -4.04 -0.02 1.36 16 8 N -0.70 -7.94 5.55 -60.73 -0.34 -8.28 16 9 C 0.51 7.46 7.89 -11.58 -0.09 7.37 16 10 O -0.52 -8.62 16.48 5.50 0.09 -8.53 16 11 C 0.50 8.39 7.89 -11.58 -0.09 8.29 16 12 O -0.53 -9.92 16.48 5.50 0.09 -9.83 16 13 N -0.69 -12.08 4.92 -60.74 -0.30 -12.38 16 14 C 0.14 2.82 4.50 -4.05 -0.02 2.80 16 15 C 0.03 0.76 0.50 -155.65 -0.08 0.69 16 16 C -0.14 -3.07 7.88 37.16 0.29 -2.78 16 17 C -0.15 -3.17 7.44 37.16 0.28 -2.89 16 18 C -0.61 -16.25 8.42 -34.44 -0.29 -16.54 16 19 H 0.06 1.76 7.99 -52.49 -0.42 1.34 16 20 C 0.04 1.25 5.07 -17.82 -0.09 1.16 16 21 N -0.89 -26.38 13.69 55.43 0.76 -25.62 16 22 Si 1.05 24.90 23.33 -169.99 -3.97 20.93 16 23 H -0.30 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.29 -6.49 6.80 56.52 0.38 -6.11 16 25 H -0.28 -6.03 5.64 56.52 0.32 -5.71 16 26 H 0.06 0.38 7.83 -51.93 -0.41 -0.02 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.36 7.90 -51.93 -0.41 -0.05 16 29 H 0.10 0.53 8.14 -51.92 -0.42 0.11 16 30 H 0.10 0.62 7.94 -51.93 -0.41 0.21 16 31 H 0.07 0.70 7.87 -51.93 -0.41 0.29 16 32 H 0.08 0.73 7.77 -51.93 -0.40 0.32 16 33 H 0.41 4.21 7.87 -40.82 -0.32 3.89 16 34 H 0.41 6.89 5.69 -40.82 -0.23 6.66 16 35 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 36 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.06 1.31 4.44 -51.93 -0.23 1.08 16 38 H 0.02 0.44 7.06 -51.93 -0.37 0.07 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.05 1.15 8.13 -51.93 -0.42 0.73 16 41 H 0.03 0.54 6.68 -51.93 -0.35 0.20 16 42 H 0.04 0.92 2.89 -51.93 -0.15 0.77 16 43 H 0.27 8.02 8.73 -40.82 -0.36 7.67 16 LS Contribution 341.58 15.07 5.15 5.15 Total: -1.00 -30.21 341.58 -6.39 -36.60 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -6.74 Total: 7.42 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -1.14 Total: -5.46 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: 0.12 Total: -46.28 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: 0.18 Total: -18.36 kcal Atomic # 14 Polarization: 24.90 SS G_CDS: -3.97 Total: 20.93 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.21 -6.39 -36.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348651394.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.925 kcal (2) G-P(sol) polarization free energy of solvation -30.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds